Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 4.7e-175 617.8 332 100.0
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 2.6e-101 372.9 341 60.1
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 7.7e-101 371.3 341 60.7
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 4.2e-99 365.5 344 58.4
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 5.5e-99 365.2 337 59.3
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 3.6e-98 362.5 338 56.8
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 4.7e-98 362.1 338 56.8
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.0e-97 360.9 344 57.3
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.8e-97 360.1 338 57.4
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.1e-96 357.5 338 57.4
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.5e-96 357.1 338 56.8
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 3.3e-96 355.9 344 56.1
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 3.3e-96 355.9 344 57.3
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 9.7e-96 354.4 335 57.9
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 9.7e-96 354.4 338 58.3
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 1.3e-95 354.0 344 56.7
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 2.2e-95 353.2 344 56.1
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 4.8e-95 352.1 345 56.2
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 4.1e-94 349.0 334 57.5
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 1.5e-93 347.1 343 57.1
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 2.0e-93 346.7 336 55.4
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.6e-93 346.3 336 56.2
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 2.2e-92 343.2 347 55.0
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 2.9e-92 342.8 339 54.9
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 1.1e-91 340.9 341 56.0
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.4e-91 340.5 337 55.8
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 4.2e-91 339.0 343 55.1
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 5.5e-91 338.6 336 56.0
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 7.2e-91 338.2 340 56.2
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 9.4e-91 337.8 339 55.8
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 1.6e-90 337.0 341 53.4
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 2.1e-90 336.7 333 57.1
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 2.1e-90 336.7 344 54.4
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 2.7e-90 336.3 333 59.2
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 3.6e-90 335.9 341 56.0
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 3.6e-90 335.9 336 55.7
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 1.0e-89 334.3 344 52.9
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 1.0e-89 334.3 332 55.1
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 1.4e-89 334.0 330 54.2
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 1.8e-89 333.6 342 54.4
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 2.3e-89 333.2 349 55.0
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 3.0e-89 332.8 341 53.1
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 5.2e-89 332.0 334 53.6
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 5.2e-89 332.0 343 54.5
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 6.7e-89 331.6 343 53.1
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 1.1e-88 330.9 342 53.8
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 2.0e-88 330.1 338 55.3
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 2.0e-88 330.1 342 53.2
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 3.3e-88 329.3 344 54.9
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 4.4e-88 328.9 345 53.3
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 5.7e-88 328.6 292 58.2
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 1.3e-87 327.4 342 52.6
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 3.7e-87 325.9 344 53.2
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 4.8e-87 325.5 254 63.4
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 1.8e-86 323.6 344 51.7
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 3.1e-86 322.8 350 52.3
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 3.1e-86 322.8 331 55.3
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 4.1e-86 322.4 341 52.5
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 1.2e-85 320.9 359 55.7
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 1.6e-85 320.5 329 56.5
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 2.0e-85 320.1 329 52.9
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 2.6e-85 319.7 346 53.2
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 2.6e-85 319.7 356 52.8
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 3.5e-85 319.3 360 52.2
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 4.5e-85 318.9 335 52.8
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.0e-84 317.8 347 50.1
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 1.3e-84 317.4 309 55.0
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.7e-84 317.0 342 52.6
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 2.2e-84 316.6 342 54.7
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 5.0e-84 315.5 346 50.9
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 1.1e-83 314.3 336 52.7
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 2.5e-83 313.2 345 50.4
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 2.3e-81 306.6 335 53.1
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 3.0e-81 306.2 341 51.9
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 8.8e-81 304.7 335 51.6
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 3.3e-80 302.8 304 53.6
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 4.8e-79 298.9 312 54.2
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 1.1e-78 297.7 243 59.7
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 7.0e-78 295.0 221 63.3
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 1.2e-77 294.3 350 49.4
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 1.2e-77 294.3 361 48.5
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 2.0e-77 293.5 252 57.5
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 3.5e-77 292.7 322 51.9
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 5.0e-76 288.9 320 52.5
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 6.5e-76 288.5 332 53.9
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 1.2e-74 284.3 342 53.5
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 1.6e-74 283.9 311 55.3
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 2.1e-74 283.5 313 52.1
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.7e-74 282.3 327 51.1
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 1.0e-73 281.2 346 45.7
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 3.0e-73 279.6 310 51.0
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 3.4e-72 276.2 341 53.1
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 4.4e-72 275.8 343 52.8
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.8e-71 273.1 235 60.0
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.8e-71 273.1 238 59.2
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 6.3e-71 271.9 262 50.8
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 6.3e-71 271.9 354 47.7
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.1e-70 271.2 234 60.7
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 1.4e-70 270.8 335 47.8
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 7.0e-70 268.5 300 53.0
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 2.7e-69 266.5 263 57.4
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 6.5e-68 261.9 352 49.1
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 6.5e-68 261.9 318 48.1
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.7e-66 255.8 311 49.8
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 3.4e-64 249.6 254 53.9
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.4e-62 243.4 219 56.6
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 4.5e-61 239.2 245 49.4
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 2.3e-60 236.9 204 60.3
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 1.1e-59 234.6 257 45.1
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.1e-59 234.6 290 47.6
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 1.4e-57 227.6 329 46.8
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 4.4e-56 222.6 249 51.0
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 4.4e-56 222.6 249 51.0
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 2.2e-55 220.3 176 64.8
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 3.2e-54 216.5 266 43.6
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 9.2e-54 214.9 332 42.5
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 6.6e-52 208.8 209 54.5
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 1.5e-51 207.6 251 42.6
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.3e-51 206.1 277 43.0
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.0e-48 197.2 249 46.6
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 1.9e-46 190.7 122 73.8
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 7.8e-45 185.3 223 47.5
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 1.3e-44 184.5 214 50.0
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.3e-44 184.5 132 67.4
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 5.0e-44 182.6 252 45.2
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 2.5e-43 180.3 181 54.1
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 6.2e-42 175.6 154 59.7
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.4e-41 174.5 146 57.5
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.7e-39 167.5 201 42.8
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 1.6e-37 161.0 248 38.7
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 1.8e-33 147.5 148 49.3
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 2.2e-31 140.6 183 44.3
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.0e-28 130.2 166 50.0
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 3.9e-28 129.8 173 45.7
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.5e-27 127.9 124 54.0
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 1.2e-26 124.8 159 40.9
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 2.8e-26 123.6 288 30.9
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 1.3e-23 114.8 78 69.2
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 5.4e-22 109.4 106 55.7
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 9.9e-16 88.6 170 31.8
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 3.0e-12 77.0 186 31.2
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 1.9e-11 74.3 83 49.4
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 2.5e-11 73.9 66 57.6
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 3.3e-11 73.6 231 26.0


User provided reference genes

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