Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 2.2e-208 729.2 503 100.0
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 3.6e-134 482.6 422 71.6
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 6.1e-134 481.9 424 69.1
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 1.0e-133 481.1 422 67.3
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 1.5e-132 477.2 424 70.5
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 1.5e-132 477.2 420 70.5
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 9.7e-132 474.6 426 66.2
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.8e-131 473.0 431 65.9
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 7.0e-130 468.4 423 69.3
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 2.1e-126 456.8 414 65.2
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 2.1e-126 456.8 423 64.3
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 3.6e-126 456.1 424 64.2
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 4.0e-125 452.6 420 68.3
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 2.0e-124 450.3 425 66.8
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 5.7e-124 448.7 423 66.7
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 7.5e-124 448.4 423 65.5
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 3.7e-123 446.0 415 64.6
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 6.3e-123 445.3 422 66.8
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 8.3e-123 444.9 415 64.3
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 1.4e-122 444.1 417 65.0
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 3.5e-121 439.5 423 66.0
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 1.3e-120 437.6 423 66.9
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 1.7e-120 437.2 421 65.6
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 2.9e-120 436.4 420 64.5
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 6.5e-120 435.3 422 63.0
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 8.6e-120 434.9 417 64.7
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 9.5e-119 431.4 417 65.0
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.8e-117 427.2 421 65.1
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 5.2e-117 425.6 421 64.8
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 8.9e-117 424.9 421 64.6
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 8.9e-117 424.9 422 63.3
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 1.5e-116 424.1 420 63.1
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 5.7e-116 422.2 426 64.1
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 9.8e-116 421.4 427 60.7
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 6.3e-115 418.7 418 61.5
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 1.4e-114 417.5 420 61.0
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 1.8e-114 417.2 420 62.6
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 2.4e-114 416.8 423 60.3
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 2.4e-114 416.8 422 61.6
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 2.4e-114 416.8 422 62.3
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 5.4e-114 415.6 420 61.0
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 9.2e-114 414.8 421 59.9
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 9.2e-114 414.8 422 62.1
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 3.5e-113 412.9 425 59.8
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 3.5e-113 412.9 421 62.5
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 4.5e-113 412.5 431 64.5
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.7e-112 410.6 426 58.7
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 3.8e-112 409.5 428 60.3
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 3.8e-112 409.5 438 58.9
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 1.5e-111 407.5 424 62.7
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.5e-111 406.8 422 62.3
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 4.3e-111 406.0 430 64.0
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 7.3e-111 405.2 424 57.8
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 9.5e-111 404.8 422 61.4
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.6e-110 404.1 421 62.2
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 2.8e-110 403.3 432 62.3
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 8.0e-110 401.7 420 60.7
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 1.0e-109 401.4 435 59.1
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 2.3e-109 400.2 458 58.5
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 3.0e-109 399.8 414 62.8
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 1.2e-108 397.9 419 62.5
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 2.6e-108 396.7 414 62.3
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 2.6e-108 396.7 429 63.6
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 4.4e-108 396.0 445 58.4
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 2.2e-107 393.7 530 51.5
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 6.4e-107 392.1 403 63.3
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 6.4e-107 392.1 417 61.4
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 8.3e-107 391.7 422 60.0
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 1.4e-106 391.0 420 60.7
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.4e-106 391.0 426 59.4
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.4e-106 390.2 422 59.0
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 2.7e-105 386.7 419 58.5
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.0e-104 384.8 379 59.1
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 3.0e-104 383.3 451 58.8
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 8.6e-104 381.7 428 54.9
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 8.6e-104 381.7 423 59.6
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 3.3e-103 379.8 417 58.5
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 3.6e-102 376.3 424 57.8
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 2.3e-101 373.6 420 59.0
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 6.8e-101 372.1 417 56.1
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 1.5e-100 370.9 426 57.7
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 7.5e-100 368.6 441 59.2
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 2.9e-99 366.7 447 55.3
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 8.3e-99 365.2 430 56.0
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 8.3e-99 365.2 437 55.6
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 1.9e-98 364.0 428 58.9
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 2.4e-98 363.6 438 55.9
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 4.1e-98 362.8 419 56.3
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 7.0e-98 362.1 410 58.3
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 1.2e-97 361.3 447 53.0
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 4.6e-97 359.4 341 68.3
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 7.8e-97 358.6 363 63.1
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 7.8e-97 358.6 443 56.4
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 1.3e-96 357.8 422 58.3
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 1.1e-95 354.8 423 53.7
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 1.5e-95 354.4 437 54.0
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 3.3e-95 353.2 415 58.6
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.1e-93 348.2 420 56.9
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 1.8e-93 347.4 415 57.3
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 1.8e-93 347.4 438 55.7
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 3.1e-93 346.7 456 53.7
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 1.2e-92 344.7 416 56.5
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 2.0e-92 344.0 429 55.5
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 2.6e-92 343.6 409 56.2
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.9e-90 337.4 416 53.6
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 7.1e-90 335.5 417 56.4
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 8.6e-88 328.6 378 54.8
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 1.6e-86 324.3 420 53.6
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.4e-85 320.5 411 55.0
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 2.2e-83 313.9 415 54.0
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 4.1e-82 309.7 525 45.3
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.3e-80 304.7 437 48.7
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 2.3e-80 303.9 418 54.5
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 3.9e-80 303.1 337 59.3
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.6e-80 302.4 410 54.4
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 2.4e-77 293.9 277 62.1
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 4.0e-77 293.1 233 74.2
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 2.4e-74 283.9 412 50.0
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 6.0e-73 279.3 265 65.3
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.3e-72 278.1 451 46.8
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 8.7e-72 275.4 417 44.1
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 3.1e-69 266.9 342 54.4
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 4.9e-67 259.6 425 46.4
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 2.4e-66 257.3 285 58.9
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 4.8e-62 243.0 399 46.6
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 8.1e-62 242.3 450 42.4
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 3.3e-47 193.7 427 35.6
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 2.2e-46 191.0 439 34.4
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 3.4e-44 183.7 221 61.1
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.1e-42 178.7 273 45.4
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 7.9e-33 146.0 402 34.8
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 3.1e-29 134.0 128 59.4
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 1.1e-26 125.6 441 32.9
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 4.7e-25 120.2 192 46.4
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 1.5e-23 115.2 168 52.4
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.3e-23 114.0 67 76.1
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 9.7e-23 112.5 186 44.6
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 2.2e-22 111.3 113 57.5
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 2.2e-22 111.3 280 35.7
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 4.8e-22 110.2 179 44.1
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.7e-19 101.7 163 49.1
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 5.0e-19 100.1 77 66.2
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.1e-18 99.0 100 61.0
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 4.2e-18 97.1 194 41.8
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 7.2e-18 96.3 149 43.0
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 2.1e-17 94.7 194 40.7
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 6.1e-17 93.2 166 38.6
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 1.1e-13 82.4 389 30.1
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 5.3e-13 80.1 114 43.0
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 4.5e-12 77.0 82 53.7
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 3.8e-11 73.9 106 43.4
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 1.9e-10 71.6 319 30.1
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 2.7e-09 67.8 272 26.5
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 4.7e-09 67.0 151 41.7
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 6.1e-09 66.6 62 54.8
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 7.5e-07 59.7 192 33.9


User provided reference genes

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