Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 2.7e-126 455.3 226 100.0
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 1.8e-93 346.3 198 86.9
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 4.9e-91 338.2 216 79.2
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 1.6e-89 333.2 215 75.3
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 2.1e-89 332.8 216 78.2
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 6.0e-89 331.3 200 81.0
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 7.8e-89 330.9 206 79.1
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 1.3e-88 330.1 215 77.2
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 1.3e-88 330.1 205 78.5
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 1.7e-88 329.7 202 80.7
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 5.1e-88 328.2 216 75.5
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 5.1e-88 328.2 215 75.3
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 6.6e-88 327.8 190 82.6
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 1.6e-86 323.2 205 76.6
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 4.7e-86 321.6 215 72.1
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 4.7e-86 321.6 182 85.7
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 6.2e-86 321.2 190 81.6
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 8.1e-86 320.9 215 73.5
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 1.4e-85 320.1 216 74.5
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.4e-85 320.1 206 74.8
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 2.4e-85 319.3 217 73.7
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 2.4e-85 319.3 191 80.6
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 4.0e-85 318.5 203 74.9
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 6.8e-85 317.8 182 85.2
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 1.2e-84 317.0 204 75.5
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 1.2e-84 317.0 215 71.6
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 5.8e-84 314.7 220 70.9
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 7.6e-84 314.3 226 70.8
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 9.9e-84 313.9 213 72.3
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 9.9e-84 313.9 201 77.6
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 1.3e-83 313.5 200 74.5
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 1.7e-83 313.2 182 84.6
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 3.8e-83 312.0 198 76.8
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 6.4e-83 311.2 206 74.8
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 1.1e-82 310.5 211 73.0
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 1.4e-82 310.1 224 70.1
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 3.2e-82 308.9 206 74.3
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 7.1e-82 307.8 215 70.7
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 1.2e-81 307.0 203 72.9
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 2.1e-81 306.2 223 71.3
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 1.0e-80 303.9 201 72.1
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 1.3e-80 303.5 206 72.8
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 1.7e-80 303.1 203 73.9
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 1.7e-80 303.1 194 74.2
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 2.3e-80 302.8 200 73.5
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 3.0e-80 302.4 215 69.3
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 8.7e-80 300.8 216 69.0
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 8.7e-80 300.8 215 69.8
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 8.7e-80 300.8 215 69.8
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 1.9e-79 299.7 215 69.3
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 2.5e-79 299.3 203 72.4
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 5.6e-79 298.1 190 75.8
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 7.3e-79 297.7 194 74.7
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 9.6e-79 297.4 185 76.2
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 1.3e-78 297.0 213 67.1
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 1.3e-78 297.0 203 69.5
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 1.3e-78 297.0 203 72.4
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 1.6e-78 296.6 215 67.4
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 3.6e-78 295.4 219 68.0
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 1.1e-77 293.9 179 78.2
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 1.4e-77 293.5 224 65.6
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 1.8e-77 293.1 186 76.9
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 3.1e-77 292.4 213 67.6
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 4.0e-77 292.0 215 66.5
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 1.5e-76 290.0 198 70.7
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 4.4e-76 288.5 184 76.1
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 4.4e-76 288.5 201 67.2
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 5.8e-76 288.1 190 72.6
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 9.9e-76 287.3 215 68.4
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 2.2e-75 286.2 181 72.4
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 2.2e-75 286.2 203 70.0
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 3.8e-75 285.4 206 71.4
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 8.4e-75 284.3 200 71.0
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 1.4e-74 283.5 200 70.0
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 3.2e-74 282.3 200 70.0
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 3.2e-74 282.3 179 77.1
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 1.2e-73 280.4 209 67.0
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 1.6e-73 280.0 199 68.3
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 1.6e-73 280.0 202 68.3
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 1.0e-72 277.3 201 69.7
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 1.0e-72 277.3 235 61.3
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 3.0e-72 275.8 197 68.5
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 1.5e-71 273.5 169 74.6
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 1.9e-71 273.1 174 73.0
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 2.5e-71 272.7 193 65.8
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 4.3e-71 271.9 169 74.6
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 5.6e-71 271.6 169 74.6
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 5.6e-71 271.6 169 74.0
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 5.6e-71 271.6 169 74.0
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 7.3e-71 271.2 169 74.6
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 7.3e-71 271.2 169 74.6
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 1.3e-70 270.4 168 74.4
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 1.3e-70 270.4 169 74.0
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 1.6e-70 270.0 169 74.0
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 2.1e-70 269.6 214 64.0
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 2.8e-70 269.2 168 73.8
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 3.6e-70 268.9 220 65.5
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 1.1e-69 267.3 173 74.6
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 2.4e-69 266.2 220 65.0
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 3.1e-69 265.8 169 73.4
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 3.1e-69 265.8 169 73.4
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 3.1e-69 265.8 169 73.4
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 2.6e-68 262.7 220 64.1
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 1.3e-67 260.4 197 68.0
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 6.4e-67 258.1 306 47.1
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 4.6e-65 251.9 204 63.2
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 4.6e-65 251.9 199 64.3
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 1.3e-64 250.4 235 57.9
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 2.3e-64 249.6 189 64.6
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 2.8e-62 242.7 234 56.8
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 8.1e-62 241.1 286 49.0
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 1.4e-61 240.4 234 56.4
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 1.8e-61 240.0 199 61.8
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 2.9e-59 232.6 191 62.3
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 3.2e-58 229.2 205 58.0
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 7.1e-58 228.0 205 58.0
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 2.7e-57 226.1 183 65.6
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 3.0e-56 222.6 186 60.2
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 5.7e-55 218.4 143 75.5
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 1.8e-53 213.4 142 73.2
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 2.4e-53 213.0 135 76.3
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 1.5e-52 210.3 129 77.5
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 2.0e-52 209.9 140 70.7
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 5.8e-52 208.4 173 59.0
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 7.6e-52 208.0 158 66.5
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 2.5e-50 203.0 149 67.1
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 1.8e-45 186.8 140 66.4
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 3.1e-45 186.0 141 66.7
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 2.9e-43 179.5 107 78.5
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 4.6e-41 172.2 142 63.4
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 1.5e-36 157.1 123 60.2
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 2.6e-36 156.4 131 58.0
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 2.6e-36 156.4 154 53.9
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 2.9e-35 152.9 113 62.8
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 3.8e-35 152.5 105 62.9
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 3.0e-32 142.9 93 68.8
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 5.1e-32 142.1 91 69.2
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 1.6e-28 130.6 125 57.6
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 1.6e-28 130.6 125 57.6
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 3.0e-24 116.3 88 65.9
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 4.1e-21 105.9 90 56.7
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 1.3e-19 100.9 66 71.2
Oeu033208.1 Olea europaea HOM05D004975 ORTHO05D005963 1.3e-19 100.9 97 55.7
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 4.7e-17 92.4 76 57.9
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 9.8e-15 84.7 64 60.9
CBR_g8145 Chara braunii HOM05D004975 ORTHO05D005963 2.2e-11 73.6 52 63.5
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 2.5e-10 70.1 163 30.7
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis HOM05D001654 ORTHO05D002773 4.2e-10 69.3 45 62.2
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 3.6e-09 66.2 48 64.6


User provided reference genes

Program Settings