Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01797 Eucalyptus grandis HOM05D000554 ORTHO05D000860 1.0e-48 196.4 102 100.0
Eucgr.H02146 Eucalyptus grandis HOM05D000554 ORTHO05D000860 9.5e-26 120.2 90 76.7
Eucgr.A00057 Eucalyptus grandis HOM05D000554 ORTHO05D000860 3.6e-25 118.2 87 75.9
Eucgr.A00261 Eucalyptus grandis HOM05D000554 ORTHO05D000860 6.8e-24 114.0 87 73.6
Prupe.6G364600 Prunus persica HOM05D000554 ORTHO05D000860 3.4e-15 85.1 87 59.8
Nn7g37647 Nelumbo nucifera HOM05D000554 ORTHO05D000860 1.7e-14 82.8 87 64.4
PGR083G1164 Punica granatum HOM05D000554 ORTHO05D000860 1.1e-13 80.1 87 60.9
Peaxi162Scf00296g00116 Petunia axillaris HOM05D000554 ORTHO05D000860 3.2e-13 78.6 89 61.8
Thecc.05G185100 Theobroma cacao HOM05D000554 ORTHO05D000860 3.2e-13 78.6 87 55.2
Dinv29079 Davidia involucrata HOM05D000554 ORTHO05D000860 4.1e-13 78.2 87 55.2
Cc09_g04050 Coffea canephora HOM05D000554 ORTHO05D000860 5.4e-13 77.8 91 56.0
Potri.008G077100 Populus trichocarpa HOM05D000554 ORTHO05D000860 7.0e-13 77.4 87 54.0
Potri.010G180600 Populus trichocarpa HOM05D000554 ORTHO05D000860 9.2e-13 77.0 87 54.0
MD04G1248300 Malus domestica HOM05D000554 ORTHO05D000860 1.2e-12 76.6 88 56.8
Sabra08G0057500 Salix brachista HOM05D000554 ORTHO05D000860 1.2e-12 76.6 87 54.0
Actinidia03246 Actinidia chinensis HOM05D000554 ORTHO05D000860 1.6e-12 76.3 88 54.5
AUR62006624 Chenopodium quinoa HOM05D000554 ORTHO05D000860 2.0e-12 75.9 89 51.7
MD12G1262400 Malus domestica HOM05D000554 ORTHO05D000860 2.7e-12 75.5 88 58.0
Ah.06g195280 Amaranthus hybridus HOM05D000554 ORTHO05D000860 3.5e-12 75.1 89 53.9
Cpa.g.sc99.43 Carica papaya HOM05D000554 ORTHO05D000860 3.5e-12 75.1 87 51.7
GSVIVG01003757001 Vitis vinifera HOM05D000554 ORTHO05D000860 4.6e-12 74.7 89 57.3
QL10p048265 Quercus lobata HOM05D000554 ORTHO05D000860 7.8e-12 73.9 87 56.3
MELO3C008609.2 Cucumis melo HOM05D000554 ORTHO05D000860 1.0e-11 73.6 87 56.3
Dinv21357 Davidia involucrata HOM05D000554 ORTHO05D000860 1.0e-11 73.6 87 52.9
Sed0009108 Sechium edule HOM05D000554 ORTHO05D000860 1.0e-11 73.6 87 55.2
Dinv22719 Davidia involucrata HOM05D000554 ORTHO05D000860 1.3e-11 73.2 86 53.5
Hund21928 Selenicereus undatus HOM05D000554 ORTHO05D000860 1.3e-11 73.2 88 54.5
TWI18G1328 Tripterygium wilfordii HOM05D000554 ORTHO05D000860 1.3e-11 73.2 87 55.2
Phvul.005G152000 Phaseolus vulgaris HOM05D000554 ORTHO05D000860 2.3e-11 72.4 85 57.6
vmacro15644 Vaccinium macrocarpon HOM05D000554 ORTHO05D000860 2.3e-11 72.4 85 51.8
Hma1.2p1_2339F.1_g320250 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 3.0e-11 72.0 87 52.9
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 3.9e-11 71.6 94 55.3
RcHm_v2.0_Chr3g0447471 Rosa chinensis HOM05D000554 ORTHO05D000860 3.9e-11 71.6 87 51.7
ClCG11G009060 Citrullus lanatus HOM05D000554 ORTHO05D000860 5.0e-11 71.2 87 55.2
Lj3g0001003 Lotus japonicus HOM05D000554 ORTHO05D000860 6.6e-11 70.9 85 55.3
arahy.Tifrunner.gnm1.ann1.4QB72P Arachis hypogaea HOM05D000554 ORTHO05D000860 8.6e-11 70.5 86 58.1
Haze_01537 Corylus avellana HOM05D000554 ORTHO05D000860 8.6e-11 70.5 85 55.3
ATR0743G035 Amborella trichopoda HOM05D000554 ORTHO05D000860 1.1e-10 70.1 91 51.6
arahy.Tifrunner.gnm1.ann1.66EN6R Arachis hypogaea HOM05D000554 ORTHO05D000860 1.1e-10 70.1 84 52.4
ECA232G4534 Erigeron canadensis HOM05D000554 ORTHO05D000860 1.1e-10 70.1 88 51.1
Cfa015134 Carpinus fangiana HOM05D000554 ORTHO05D000860 1.5e-10 69.7 85 54.1
Duzib177G0989 Durio zibethinus HOM05D000554 ORTHO05D000860 1.9e-10 69.3 86 51.2
Lalb_Chr03g0026161 Lupinus albus HOM05D000554 ORTHO05D000860 1.9e-10 69.3 87 51.7
Nitab4.5_0009631g0010 Nicotiana tabacum HOM05D000554 ORTHO05D000860 1.9e-10 69.3 78 60.3
Actinidia39856 Actinidia chinensis HOM05D000554 ORTHO05D000860 2.5e-10 68.9 84 53.6
Glyma.13G343300 Glycine max HOM05D000554 ORTHO05D000860 3.3e-10 68.6 84 56.0
PSO017G5494 Papaver somniferum HOM05D000554 ORTHO05D000860 3.3e-10 68.6 88 52.3
PSO675G6654 Papaver somniferum HOM05D000554 ORTHO05D000860 3.3e-10 68.6 88 52.3
VMungo1127G1545 Vigna mungo HOM05D000554 ORTHO05D000860 3.3e-10 68.6 85 57.6
Gorai.007G350700 Gossypium raimondii HOM05D000554 ORTHO05D000860 4.3e-10 68.2 87 50.6
Lalb_Chr14g0372421 Lupinus albus HOM05D000554 ORTHO05D000860 4.3e-10 68.2 85 56.5
Lalb_Chr19g0138311 Lupinus albus HOM05D000554 ORTHO05D000860 4.3e-10 68.2 87 52.9
Rhsim05G0164800 Rhododendron simsii HOM05D000554 ORTHO05D000860 4.3e-10 68.2 91 52.7
SalBow6G3509 Salvia bowleyana HOM05D000554 ORTHO05D000860 5.6e-10 67.8 87 46.0
Glyma.15G031100 Glycine max HOM05D000554 ORTHO05D000860 7.3e-10 67.4 84 56.0
HanXRQChr16g0502621 Helianthus annuus HOM05D000554 ORTHO05D000860 7.3e-10 67.4 87 48.3
Nitab4.5_0003132g0050 Nicotiana tabacum HOM05D000554 ORTHO05D000860 7.3e-10 67.4 53 67.9
PGSC0003DMG400027011 Solanum tuberosum HOM05D000554 ORTHO05D000860 7.3e-10 67.4 53 67.9
Duzib128G0940 Durio zibethinus HOM05D000554 ORTHO05D000860 9.5e-10 67.0 87 50.6
Glyma.11G129000 Glycine max HOM05D000554 ORTHO05D000860 9.5e-10 67.0 85 55.3
Hma1.2p1_0754F.1_g213090 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 9.5e-10 67.0 87 51.7
Nitab4.5_0001003g0110 Nicotiana tabacum HOM05D000554 ORTHO05D000860 1.2e-09 66.6 79 57.0
Peaxi162Scf00375g00416 Petunia axillaris HOM05D000554 ORTHO05D000860 1.2e-09 66.6 50 70.0
Psat1g007400 Pisum sativum HOM05D000554 ORTHO05D000860 1.2e-09 66.6 85 54.1
Solyc06g073340.3 Solanum lycopersicum HOM05D000554 ORTHO05D000860 1.2e-09 66.6 53 67.9
Sopen06g029720 Solanum pennellii HOM05D000554 ORTHO05D000860 1.2e-09 66.6 53 67.9
Sed0009610 Sechium edule HOM05D000554 ORTHO05D000860 1.6e-09 66.2 85 50.6
FAN02G2231 Fragaria x ananassa HOM05D000554 ORTHO05D000860 2.1e-09 65.9 89 50.6
Gohir.A11G305100 Gossypium hirsutum HOM05D000554 ORTHO05D000860 2.1e-09 65.9 87 49.4
Gohir.D11G320500 Gossypium hirsutum HOM05D000554 ORTHO05D000860 2.1e-09 65.9 87 49.4
Lalb_Chr01g0003241 Lupinus albus HOM05D000554 ORTHO05D000860 2.1e-09 65.9 88 53.4
Atru.chr12.1655 Acer truncatum HOM05D000554 ORTHO05D000860 2.8e-09 65.5 90 48.9
Lj3g0004152 Lotus japonicus HOM05D000554 ORTHO05D000860 2.8e-09 65.5 87 55.2
BcaC03g14704 Brassica carinata HOM05D000554 ORTHO05D000860 3.6e-09 65.1 77 53.2
A02p13210 Brassica napus HOM05D000554 ORTHO05D000860 3.6e-09 65.1 77 53.2
C02p21370 Brassica napus HOM05D000554 ORTHO05D000860 3.6e-09 65.1 77 53.2
BolC2t08276H Brassica oleracea HOM05D000554 ORTHO05D000860 3.6e-09 65.1 77 53.2
BraA02t06377Z Brassica rapa HOM05D000554 ORTHO05D000860 3.6e-09 65.1 77 53.2
BcaB05g24113 Brassica carinata HOM05D000554 ORTHO05D000860 4.7e-09 64.7 76 48.7
CAN.G65.177 Capsicum annuum HOM05D000554 ORTHO05D000860 4.7e-09 64.7 50 70.0
TWI36G0644 Tripterygium wilfordii HOM05D000554 ORTHO05D000860 4.7e-09 64.7 87 50.6
EL10Ac4g10019 Beta vulgaris HOM05D000554 ORTHO05D000860 8.0e-09 63.9 85 50.6
Glyma.12G053500 Glycine max HOM05D000554 ORTHO05D000860 8.0e-09 63.9 85 52.9
Lj6A57G43 Lonicera japonica HOM05D000554 ORTHO05D000860 8.0e-09 63.9 86 46.5
arahy.Tifrunner.gnm1.ann1.LX8RGZ Arachis hypogaea HOM05D000554 ORTHO05D000860 1.1e-08 63.5 85 47.1
AUR62000277 Chenopodium quinoa HOM05D000554 ORTHO05D000860 1.1e-08 63.5 86 48.8
Nitab4.5_0010840g0010 Nicotiana tabacum HOM05D000554 ORTHO05D000860 1.1e-08 63.5 46 71.7
Ca_01267_v3 Cicer arietinum L. HOM05D000554 ORTHO05D000860 1.8e-08 62.8 85 51.8
TAR362G1220 Trochodendron aralioides HOM05D000554 ORTHO05D000860 1.8e-08 62.8 88 51.1
CANSAT54G0341 Cannabis sativa HOM05D000554 ORTHO05D000860 2.3e-08 62.4 84 50.0
Cc00_g08700 Coffea canephora HOM05D000554 ORTHO05D000860 2.3e-08 62.4 87 48.3
Oeu010171.1 Olea europaea HOM05D000554 ORTHO05D000860 2.3e-08 62.4 87 49.4
Phvul.011G055500 Phaseolus vulgaris HOM05D000554 ORTHO05D000860 2.3e-08 62.4 87 55.2
CSS0006355 Camellia sinensis var. sinensis HOM05D000554 ORTHO05D000860 3.1e-08 62.0 85 47.1
CSS0012969 Camellia sinensis var. sinensis HOM05D000554 ORTHO05D000860 3.1e-08 62.0 36 86.1
HanXRQChr05g0160051 Helianthus annuus HOM05D000554 ORTHO05D000860 3.1e-08 62.0 85 45.9
TAR633G0921 Trochodendron aralioides HOM05D000554 ORTHO05D000860 3.1e-08 62.0 88 50.0
Haze_04575 Corylus avellana HOM05D000554 ORTHO05D000860 5.2e-08 61.2 87 50.6
Haze_04602 Corylus avellana HOM05D000554 ORTHO05D000860 5.2e-08 61.2 87 50.6
HanXRQChr16g0511861 Helianthus annuus HOM05D000554 ORTHO05D000860 5.2e-08 61.2 85 49.4
Psat7g216240 Pisum sativum HOM05D000554 ORTHO05D000860 5.2e-08 61.2 82 51.2
Sc09g0001360 Simmondsia chinensis HOM05D000554 ORTHO05D000860 5.2e-08 61.2 86 46.5
Thhalv10018351m.g Eutrema salsugineum HOM05D000554 ORTHO05D000860 6.8e-08 60.8 76 48.7
Ca_20777_v3 Cicer arietinum L. HOM05D000554 ORTHO05D000860 8.9e-08 60.5 85 50.6
Ciclev10019506m.g Citrus clementina HOM05D000554 ORTHO05D000860 8.9e-08 60.5 51 64.7
unitig_578.g16266 Utricularia gibba HOM05D000554 ORTHO05D000860 8.9e-08 60.5 84 42.9
GSVIVG01010742001 Vitis vinifera HOM05D000554 ORTHO05D000860 1.2e-07 60.1 75 54.7
Lalb_Chr22g0352211 Lupinus albus HOM05D000554 ORTHO05D000860 1.5e-07 59.7 85 51.8
Manes.11G118300 Manihot esculenta HOM05D000554 ORTHO05D000860 1.5e-07 59.7 53 64.2
Gohir.D13G099700 Gossypium hirsutum HOM05D000554 ORTHO05D000860 2.0e-07 59.3 59 57.6
Gorai.013G111600 Gossypium raimondii HOM05D000554 ORTHO05D000860 2.0e-07 59.3 59 57.6
Lsat_1_v5_gn_0_14601 Lactuca sativa HOM05D000554 ORTHO05D000860 2.0e-07 59.3 87 44.8
QL01p046391 Quercus lobata HOM05D000554 ORTHO05D000860 2.0e-07 59.3 86 50.0
Sabra10G0138500 Salix brachista HOM05D000554 ORTHO05D000860 2.0e-07 59.3 40 80.0
MSTRG.21996 Avicennia marina HOM05D000554 ORTHO05D000860 2.6e-07 58.9 88 47.7
FvH4_6g00130 Fragaria vesca HOM05D000554 ORTHO05D000860 2.6e-07 58.9 89 47.2
FAN09G1701 Fragaria x ananassa HOM05D000554 ORTHO05D000860 2.6e-07 58.9 89 47.2
Medtr3g065380 Medicago truncatula HOM05D000554 ORTHO05D000860 2.6e-07 58.9 86 52.3
Cpa.g.sc71.12 Carica papaya HOM05D000554 ORTHO05D000860 3.4e-07 58.5 60 60.0
ClCG08G004430 Citrullus lanatus HOM05D000554 ORTHO05D000860 3.4e-07 58.5 87 42.5
Aa31LG9G17800 Aethionema arabicum HOM05D000554 ORTHO05D000860 4.4e-07 58.2 88 40.9
Potri.007G126900 Populus trichocarpa HOM05D000554 ORTHO05D000860 4.4e-07 58.2 34 76.5
Sp5g20190 Schrenkiella parvula HOM05D000554 ORTHO05D000860 4.4e-07 58.2 77 48.1
THA.LOC104800899 Tarenaya hassleriana HOM05D000554 ORTHO05D000860 4.4e-07 58.2 63 60.3
Carub.0002s1116 Capsella rubella HOM05D000554 ORTHO05D000860 5.8e-07 57.8 77 45.5
CAN.G321.17 Capsicum annuum HOM05D000554 ORTHO05D000860 7.5e-07 57.4 86 47.7
Lsat_1_v5_gn_1_69320 Lactuca sativa HOM05D000554 ORTHO05D000860 7.5e-07 57.4 83 43.4
Aqoxy2G04105 Aquilegia oxysepala HOM05D000554 ORTHO05D000860 9.8e-07 57.0 86 47.7
AL2G22120 Arabidopsis lyrata HOM05D000554 ORTHO05D000860 9.8e-07 57.0 77 45.5
DCAR_023900 Daucus carota HOM05D000554 ORTHO05D000860 9.8e-07 57.0 86 48.8
MD13G1275700 Malus domestica HOM05D000554 ORTHO05D000860 9.8e-07 57.0 39 74.4
Sabra07G0103000 Salix brachista HOM05D000554 ORTHO05D000860 9.8e-07 57.0 39 71.8
PGSC0003DMG403016183 Solanum tuberosum HOM05D000554 ORTHO05D000860 9.8e-07 57.0 101 43.6
COL.COLO4_24399 Corchorus olitorius HOM05D000554 ORTHO05D000860 1.3e-06 56.6 63 55.6
Migut.N03110 Erythranthe guttata HOM05D000554 ORTHO05D000860 1.3e-06 56.6 87 44.8
Cc07_g02910 Coffea canephora HOM05D000554 ORTHO05D000860 1.7e-06 56.2 59 55.9
Thhalv10016456m.g Eutrema salsugineum HOM05D000554 ORTHO05D000860 2.2e-06 55.8 60 58.3
Medtr2g098580 Medicago truncatula HOM05D000554 ORTHO05D000860 2.2e-06 55.8 83 50.6
Atru.chr3.1542 Acer truncatum HOM05D000554 ORTHO05D000860 2.9e-06 55.5 55 63.6
Rhsim09G0029800 Rhododendron simsii HOM05D000554 ORTHO05D000860 2.9e-06 55.5 87 44.8
Sed0026017 Sechium edule HOM05D000554 ORTHO05D000860 2.9e-06 55.5 88 46.6
BcaNung06829 Brassica carinata HOM05D000554 ORTHO05D000860 3.7e-06 55.1 52 59.6
CDE04G3385 Ceratophyllum demersum HOM05D000554 ORTHO05D000860 3.7e-06 55.1 85 47.1
CsaV3_2G010310 Cucumis sativus L. HOM05D000554 ORTHO05D000860 3.7e-06 55.1 48 64.6
Solyc11g008580.3 Solanum lycopersicum HOM05D000554 ORTHO05D000860 3.7e-06 55.1 86 46.5
Sopen11g004370 Solanum pennellii HOM05D000554 ORTHO05D000860 3.7e-06 55.1 86 46.5
AT2G31510 Arabidopsis thaliana HOM05D000554 ORTHO05D000860 4.9e-06 54.7 60 56.7
Carub.0004s1283 Capsella rubella HOM05D000554 ORTHO05D000860 4.9e-06 54.7 60 56.7
CARHR125160 Cardamine hirsuta HOM05D000554 ORTHO05D000860 4.9e-06 54.7 60 56.7
Ciclev10013647m.g Citrus clementina HOM05D000554 ORTHO05D000860 4.9e-06 54.7 90 43.3
THA.LOC104805693 Tarenaya hassleriana HOM05D000554 ORTHO05D000860 4.9e-06 54.7 89 43.8
BcaC01g05948 Brassica carinata HOM05D000554 ORTHO05D000860 6.4e-06 54.3 52 57.7
C03p20750 Brassica napus HOM05D000554 ORTHO05D000860 6.4e-06 54.3 52 57.7
Prupe.1G191400 Prunus persica HOM05D000554 ORTHO05D000860 6.4e-06 54.3 87 44.8
SGA_v2.0_scaffold31G12574 Striga asiatica HOM05D000554 ORTHO05D000860 6.4e-06 54.3 83 44.6
BcaC02g07994 Brassica carinata HOM05D000554 ORTHO05D000860 8.3e-06 53.9 52 57.7
A03p17660 Brassica napus HOM05D000554 ORTHO05D000860 8.3e-06 53.9 52 57.7
A04p24210 Brassica napus HOM05D000554 ORTHO05D000860 8.3e-06 53.9 52 57.7
C04p60940 Brassica napus HOM05D000554 ORTHO05D000860 8.3e-06 53.9 52 57.7
BolC3t14448H Brassica oleracea HOM05D000554 ORTHO05D000860 8.3e-06 53.9 52 57.7
BolC4t27585H Brassica oleracea HOM05D000554 ORTHO05D000860 8.3e-06 53.9 52 57.7
BraA03t11031Z Brassica rapa HOM05D000554 ORTHO05D000860 8.3e-06 53.9 52 57.7
BraA04t17941Z Brassica rapa HOM05D000554 ORTHO05D000860 8.3e-06 53.9 52 57.7


User provided reference genes

Program Settings