Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01687 Eucalyptus grandis HOM05D006615 ORTHO05D007999 1.7e-120 436.0 220 100.0
Aqoxy5G01194 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 8.1e-83 310.8 207 70.5
CiPaw.01G016200 Carya illinoinensis HOM05D006615 ORTHO05D007999 1.1e-82 310.5 209 69.9
Actinidia12040 Actinidia chinensis HOM05D006615 ORTHO05D007999 9.0e-82 307.4 207 71.5
GSVIVG01022099001 Vitis vinifera HOM05D006615 ORTHO05D007999 7.6e-81 304.3 210 69.5
Ah.03g145470 Amaranthus hybridus HOM05D006615 ORTHO05D007999 4.9e-80 301.6 210 67.1
Sc03g0001700 Simmondsia chinensis HOM05D006615 ORTHO05D007999 1.1e-79 300.4 213 65.7
AUR62001910 Chenopodium quinoa HOM05D006615 ORTHO05D007999 2.5e-79 299.3 219 64.8
Sabra07G0040600 Salix brachista HOM05D006615 ORTHO05D007999 3.2e-79 298.9 211 68.7
PSO170G0414 Papaver somniferum HOM05D006615 ORTHO05D007999 5.5e-79 298.1 209 67.9
Hma1.2p1_0670F.1_g200450 Hydrangea macrophylla HOM05D006615 ORTHO05D007999 7.1e-79 297.7 210 69.0
Hund16348 Selenicereus undatus HOM05D006615 ORTHO05D007999 1.6e-78 296.6 260 57.7
AUR62003898 Chenopodium quinoa HOM05D006615 ORTHO05D007999 2.1e-78 296.2 219 63.9
Gohir.D12G070500 Gossypium hirsutum HOM05D006615 ORTHO05D007999 3.5e-78 295.4 209 67.9
Gorai.008G077500 Gossypium raimondii HOM05D006615 ORTHO05D007999 3.5e-78 295.4 209 67.9
PSO210G0040 Papaver somniferum HOM05D006615 ORTHO05D007999 4.6e-78 295.0 209 67.0
Cpa.g.sc55.125 Carica papaya HOM05D006615 ORTHO05D007999 1.3e-77 293.5 209 68.9
CSS0005072 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 6.7e-77 291.2 208 65.9
COL.COLO4_11446 Corchorus olitorius HOM05D006615 ORTHO05D007999 2.1e-75 286.2 209 65.1
CSS0020579 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 2.8e-75 285.8 208 66.3
Gohir.A12G072600 Gossypium hirsutum HOM05D006615 ORTHO05D007999 1.4e-74 283.5 209 65.6
Manes.12G104500 Manihot esculenta HOM05D006615 ORTHO05D007999 1.4e-74 283.5 209 65.6
Gorai.003G025500 Gossypium raimondii HOM05D006615 ORTHO05D007999 2.4e-74 282.7 209 66.0
Haze_15377 Corylus avellana HOM05D006615 ORTHO05D007999 6.9e-74 281.2 207 65.2
Gohir.A02G156700 Gossypium hirsutum HOM05D006615 ORTHO05D007999 6.9e-74 281.2 209 65.6
MD15G1285700 Malus domestica HOM05D006615 ORTHO05D007999 6.9e-74 281.2 209 65.6
TAR625G0931 Trochodendron aralioides HOM05D006615 ORTHO05D007999 6.9e-74 281.2 210 63.8
MD02G1174700 Malus domestica HOM05D006615 ORTHO05D007999 1.2e-73 280.4 209 66.0
Gohir.D03G024000 Gossypium hirsutum HOM05D006615 ORTHO05D007999 2.0e-73 279.6 209 65.6
RcHm_v2.0_Chr2g0105951 Rosa chinensis HOM05D006615 ORTHO05D007999 2.6e-73 279.3 209 65.6
Thecc.01G059100 Theobroma cacao HOM05D006615 ORTHO05D007999 4.5e-73 278.5 209 64.6
Ciclev10026421m.g Citrus clementina HOM05D006615 ORTHO05D007999 5.9e-73 278.1 209 65.6
Prupe.7G131100 Prunus persica HOM05D006615 ORTHO05D007999 5.9e-73 278.1 207 64.7
Sed0009491 Sechium edule HOM05D006615 ORTHO05D007999 5.9e-73 278.1 209 63.2
Dinv26838 Davidia involucrata HOM05D000573 ORTHO05D000425 1.3e-72 276.9 189 70.9
vmacro05309 Vaccinium macrocarpon HOM05D006615 ORTHO05D007999 1.3e-72 276.9 209 63.6
CsaV3_2G016460 Cucumis sativus L. HOM05D006615 ORTHO05D007999 2.9e-72 275.8 209 63.6
TAR381G0796 Trochodendron aralioides HOM05D006615 ORTHO05D007999 3.8e-72 275.4 210 63.3
Duzib147G0216 Durio zibethinus HOM05D006615 ORTHO05D007999 6.5e-72 274.6 209 64.1
Nn5g30349 Nelumbo nucifera HOM05D006615 ORTHO05D007999 6.5e-72 274.6 210 61.9
FAN23G1998 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.1e-71 273.9 209 64.1
FAN26G2627 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.4e-71 273.5 209 64.1
FAN28G0965 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.4e-71 273.5 209 64.1
Atru.chr3.300 Acer truncatum HOM05D006615 ORTHO05D007999 1.9e-71 273.1 210 63.8
FvH4_1g16240 Fragaria vesca HOM05D006615 ORTHO05D007999 2.5e-71 272.7 209 63.6
Rhsim10G0115300 Rhododendron simsii HOM05D006615 ORTHO05D007999 4.2e-71 271.9 209 64.1
TWI09G1033 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 7.2e-71 271.2 214 61.2
QL06p040870 Quercus lobata HOM05D006615 ORTHO05D007999 1.2e-70 270.4 208 63.0
Sabra05G0110900 Salix brachista HOM05D006615 ORTHO05D007999 2.7e-70 269.2 208 63.0
Psat2g167840 Pisum sativum HOM05D006615 ORTHO05D007999 7.9e-70 267.7 209 61.2
FAN19G1431 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.0e-69 267.3 209 62.7
TPR.G26907 Trifolium pratense HOM05D006615 ORTHO05D007999 1.0e-69 267.3 209 61.2
MELO3C020856.2 Cucumis melo HOM05D006615 ORTHO05D007999 1.8e-69 266.5 218 61.0
Lalb_Chr05g0213321 Lupinus albus HOM05D006615 ORTHO05D007999 3.9e-69 265.4 207 60.4
ClCG02G012310 Citrullus lanatus HOM05D006615 ORTHO05D007999 5.1e-69 265.0 209 61.2
CDE02G1946 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 6.7e-69 264.6 210 58.6
Os06g0166000 Oryza sativa ssp. japonica HOM05D006615 ORTHO05D007999 4.3e-68 261.9 210 61.0
Thhalv10004869m.g Eutrema salsugineum HOM05D006615 ORTHO05D007999 7.4e-68 261.2 207 59.4
THA.LOC104821250 Tarenaya hassleriana HOM05D006615 ORTHO05D007999 1.3e-67 260.4 208 61.1
CDE04G2757 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 2.2e-67 259.6 210 57.6
Potri.005G140000 Populus trichocarpa HOM05D006615 ORTHO05D007999 2.8e-67 259.2 211 60.2
Zm00001eb375600 Zea mays HOM05D006615 ORTHO05D007999 4.8e-67 258.5 207 60.4
ATR0800G077 Amborella trichopoda HOM05D006615 ORTHO05D007999 1.4e-66 256.9 211 59.2
BcaB02g09933 Brassica carinata HOM05D006615 ORTHO05D007999 1.8e-66 256.5 209 57.9
HPP92_026439 Vanilla planifolia HOM05D006615 ORTHO05D007999 1.8e-66 256.5 209 59.8
A07p16820 Brassica napus HOM05D006615 ORTHO05D007999 2.4e-66 256.1 209 57.4
BraA07t29407Z Brassica rapa HOM05D006615 ORTHO05D007999 2.4e-66 256.1 209 57.4
Cfa004036 Carpinus fangiana HOM05D006615 ORTHO05D007999 2.4e-66 256.1 190 64.2
MSTRG.2870 Avicennia marina HOM05D006615 ORTHO05D007999 3.1e-66 255.8 209 56.9
C07p24600 Brassica napus HOM05D006615 ORTHO05D007999 3.1e-66 255.8 208 57.7
BolC7t42980H Brassica oleracea HOM05D006615 ORTHO05D007999 3.1e-66 255.8 208 57.7
Oeu049899.1 Olea europaea HOM05D006615 ORTHO05D007999 4.1e-66 255.4 208 58.2
HanXRQChr09g0263661 Helianthus annuus HOM05D006615 ORTHO05D007999 6.9e-66 254.6 209 59.8
AL8G44220 Arabidopsis lyrata HOM05D006615 ORTHO05D007999 9.0e-66 254.2 209 57.4
Carub.0008s2737 Capsella rubella HOM05D006615 ORTHO05D007999 4.5e-65 251.9 209 56.9
Glyma.11G054300 Glycine max HOM05D006615 ORTHO05D007999 4.5e-65 251.9 207 58.9
CAN.G370.40 Capsicum annuum HOM05D006615 ORTHO05D007999 5.9e-65 251.5 219 56.2
CARHR280510 Cardamine hirsuta HOM05D006615 ORTHO05D007999 5.9e-65 251.5 209 56.5
ECA232G2507 Erigeron canadensis HOM05D002761 ORTHO05D003351 5.9e-65 251.5 176 68.2
Lj4C151G8 Lonicera japonica HOM05D006615 ORTHO05D007999 5.9e-65 251.5 208 58.7
Sopen02g037800 Solanum pennellii HOM05D006615 ORTHO05D007999 5.9e-65 251.5 219 56.6
Solyc02g093220.3 Solanum lycopersicum HOM05D006615 ORTHO05D007999 1.0e-64 250.8 219 56.2
Medtr5g016890 Medicago truncatula HOM05D006615 ORTHO05D007999 1.3e-64 250.4 209 58.9
Sp2g29550 Schrenkiella parvula HOM05D006615 ORTHO05D007999 1.3e-64 250.4 207 57.0
PGSC0003DMG400004030 Solanum tuberosum HOM05D006615 ORTHO05D007999 1.3e-64 250.4 219 56.2
Lsat_1_v5_gn_4_164980 Lactuca sativa HOM05D006615 ORTHO05D007999 1.7e-64 250.0 210 58.1
Oeu014828.1 Olea europaea HOM05D006615 ORTHO05D007999 1.7e-64 250.0 209 56.5
AT5G67140 Arabidopsis thaliana HOM05D006615 ORTHO05D007999 2.2e-64 249.6 209 56.9
DCAR_010880 Daucus carota HOM05D006615 ORTHO05D007999 2.2e-64 249.6 212 56.6
Lalb_Chr16g0378591 Lupinus albus HOM05D006615 ORTHO05D007999 3.8e-64 248.8 209 58.4
Aa31LG1G15650 Aethionema arabicum HOM05D006615 ORTHO05D007999 6.5e-64 248.1 209 56.5
Cc07_g06140 Coffea canephora HOM05D006615 ORTHO05D007999 6.5e-64 248.1 209 57.9
Peaxi162Scf00549g00014 Petunia axillaris HOM05D006615 ORTHO05D007999 8.5e-64 247.7 212 56.1
Phvul.002G017400 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 4.2e-63 245.4 209 58.4
Actinidia36482 Actinidia chinensis HOM05D006615 ORTHO05D007999 1.2e-62 243.8 195 65.1
SEGI_10636 Sequoiadendron giganteum HOM05D006615 ORTHO05D007999 1.6e-62 243.4 209 56.5
Lj2g0018871 Lotus japonicus HOM05D006615 ORTHO05D007999 2.1e-62 243.0 205 58.0
Migut.H00418 Erythranthe guttata HOM05D006615 ORTHO05D007999 4.6e-62 241.9 209 56.0
Nitab4.5_0002694g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 1.0e-61 240.7 219 54.3
Atru.chr3.288 Acer truncatum HOM05D006615 ORTHO05D007999 1.4e-61 240.4 185 63.8
Glyma.01G187800 Glycine max HOM05D006615 ORTHO05D007999 1.4e-61 240.4 198 60.1
VMungo1215G1750 Vigna mungo HOM05D006615 ORTHO05D007999 1.8e-61 240.0 209 57.9
MELO3C020857.2 Cucumis melo HOM05D006615 ORTHO05D007999 3.9e-61 238.8 209 56.5
Nitab4.5_0002765g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 5.1e-61 238.4 219 54.3
CANSAT01G0297 Cannabis sativa HOM05D006615 ORTHO05D007999 3.3e-60 235.7 207 58.0
arahy.Tifrunner.gnm1.ann1.XJ9ES7 Arachis hypogaea HOM05D006615 ORTHO05D007999 4.4e-60 235.3 212 57.1
CsaV3_2G016470 Cucumis sativus L. HOM05D006615 ORTHO05D007999 9.7e-60 234.2 209 55.0
arahy.Tifrunner.gnm1.ann1.8K3JW9 Arachis hypogaea HOM05D006615 ORTHO05D007999 4.8e-59 231.9 212 56.6
Oeu017456.1 Olea europaea HOM05D006615 ORTHO05D007999 1.6e-54 216.9 209 51.2
unitig_748.g8604 Utricularia gibba HOM05D002191 ORTHO05D007999 3.7e-51 205.7 185 55.7
Mapoly0005s0095 Marchantia polymorpha HOM05D006615 ORTHO05D007999 5.7e-44 181.8 215 44.2
SGA_v2.0_scaffold15G07326 Striga asiatica HOM05D006615 ORTHO05D007999 5.7e-44 181.8 210 48.1
Aqoxy6G01271 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 4.1e-42 175.6 210 44.3
Pp3c7_15700 Physcomitrium patens HOM05D006615 ORTHO05D007999 1.2e-41 174.1 212 42.0
TWI73G1298 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 2.0e-41 173.3 134 59.0
AagrBONN_evm.TU.Sc2ySwM_344.5234 Anthoceros agrestis HOM05D006615 ORTHO05D007999 2.1e-38 163.3 214 42.1
SMO164G0246 Selaginella moellendorffii HOM05D006615 ORTHO05D007999 1.0e-29 134.4 156 43.6
Potri.007G045601 Populus trichocarpa HOM05D006615 ORTHO05D007999 5.7e-28 128.6 99 62.6
MSTRG.3434 Avicennia marina HOM05D006615 ORTHO05D007999 4.4e-20 102.4 86 57.0
EL10Ac6g15726 Beta vulgaris HOM05D006615 ORTHO05D007999 2.9e-19 99.8 93 54.8
Phvul.008G146300 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 3.9e-16 89.4 62 62.9
ClCG02G012330 Citrullus lanatus HOM05D006615 ORTHO05D007999 6.6e-16 88.6 80 53.8
Medtr5g016930 Medicago truncatula HOM05D006615 ORTHO05D007999 5.8e-12 75.5 53 62.3
FAN23G0561 Fragaria x ananassa HOM05D000710 ORTHO05D000336 3.2e-10 69.7 217 25.3
Psat3g054200 Pisum sativum HOM05D001219 ORTHO05D001017 2.0e-09 67.0 137 32.8
Psat3g054280 Pisum sativum HOM05D001219 ORTHO05D001017 2.7e-09 66.6 148 29.1
Psat3g054040 Pisum sativum HOM05D001219 ORTHO05D001017 4.6e-09 65.9 144 27.1
Dinv23311 Davidia involucrata HOM05D001219 ORTHO05D001017 6.0e-09 65.5 79 41.8
Psat3g054120 Pisum sativum HOM05D001219 ORTHO05D001017 6.0e-09 65.5 144 26.4
RcHm_v2.0_Chr2g0103761 Rosa chinensis HOM05D000710 ORTHO05D000336 1.7e-08 63.9 219 25.6
FAN19G1902 Fragaria x ananassa HOM05D000710 ORTHO05D000336 3.0e-08 63.2 165 27.3
Phvul.010G159100 Phaseolus vulgaris HOM05D001219 ORTHO05D001017 3.0e-08 63.2 143 24.5
Sc21g0004980 Simmondsia chinensis HOM05D002125 ORTHO05D002105 3.0e-08 63.2 169 30.8
FvH4_1g14800 Fragaria vesca HOM05D000710 ORTHO05D000336 6.6e-08 62.0 167 28.1
Eucgr.K02937 Eucalyptus grandis HOM05D002125 ORTHO05D002105 8.6e-08 61.6 109 33.9
CBR_g44543 Chara braunii HOM05D011700 ORTHO05D014180 1.1e-07 61.2 212 23.1
TPR.G6402 Trifolium pratense HOM05D001219 ORTHO05D001017 1.9e-07 60.5 212 25.9
Zm00001eb307130 Zea mays HOM05D001905 ORTHO05D001820 1.9e-07 60.5 203 26.6
CAN.G955.3 Capsicum annuum HOM05D002125 ORTHO05D002105 2.5e-07 60.1 156 30.8
Ca_04901_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 4.3e-07 59.3 115 33.0
unitig_26.g8959 Utricularia gibba HOM05D002125 ORTHO05D002105 4.3e-07 59.3 104 36.5
Cfa000865 Carpinus fangiana HOM05D000710 ORTHO05D000336 5.6e-07 58.9 211 26.1
Cfa006657 Carpinus fangiana HOM05D002125 ORTHO05D002105 7.3e-07 58.5 166 31.3
Psat3g055200 Pisum sativum HOM05D001219 ORTHO05D001017 7.3e-07 58.5 80 35.0
SEGI_04005 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 7.3e-07 58.5 61 45.9
TPR.G9692 Trifolium pratense HOM05D001219 ORTHO05D001017 7.3e-07 58.5 162 31.5
Nitab4.5_0000559g0290 Nicotiana tabacum HOM05D000530 ORTHO05D000621 1.2e-06 57.8 193 27.5
Nitab4.5_0005161g0090 Nicotiana tabacum HOM05D000530 ORTHO05D000621 1.2e-06 57.8 193 27.5
Psat7g261360 Pisum sativum HOM05D001219 ORTHO05D001017 1.2e-06 57.8 78 34.6
PGR004G0027 Punica granatum HOM05D002125 ORTHO05D002105 1.2e-06 57.8 109 33.0
CBR_g23992 Chara braunii HOM05D021880 ORTHO05D026584 1.6e-06 57.4 207 28.5
Manes.04G105600 Manihot esculenta HOM05D001219 ORTHO05D001017 1.6e-06 57.4 89 33.7
Medtr4g008420 Medicago truncatula HOM05D001219 ORTHO05D001017 1.6e-06 57.4 133 27.1
Nn8g39731 Nelumbo nucifera HOM05D001219 ORTHO05D001017 1.6e-06 57.4 80 33.8
Rhsim01G0030200 Rhododendron simsii HOM05D001219 ORTHO05D001017 1.6e-06 57.4 148 26.4
Rhsim01G0030300 Rhododendron simsii HOM05D001219 ORTHO05D001017 1.6e-06 57.4 148 27.0
TPR.G15180 Trifolium pratense HOM05D001219 ORTHO05D001017 1.6e-06 57.4 103 31.1
Ah.08g209960 Amaranthus hybridus HOM05D002125 ORTHO05D002105 2.1e-06 57.0 156 30.1
Rhsim01G0032000 Rhododendron simsii HOM05D001219 ORTHO05D001017 2.1e-06 57.0 148 27.0
TPR.G19224 Trifolium pratense HOM05D001219 ORTHO05D001017 2.1e-06 57.0 126 31.7
EL10Ac8g19064 Beta vulgaris HOM05D003317 ORTHO05D003696 2.8e-06 56.6 131 30.5
Haze_04113 Corylus avellana HOM05D002125 ORTHO05D002105 2.8e-06 56.6 159 30.8
Medtr4g008400 Medicago truncatula HOM05D001219 ORTHO05D001017 2.8e-06 56.6 123 26.0
Nn6g31932 Nelumbo nucifera HOM05D000710 ORTHO05D000336 3.6e-06 56.2 157 25.5
Oeu045585.1 Olea europaea HOM05D000530 ORTHO05D000621 3.6e-06 56.2 202 26.2
Peaxi162Scf00332g00225 Petunia axillaris HOM05D001219 ORTHO05D001017 3.6e-06 56.2 74 36.5
Peaxi162Scf00744g00225 Petunia axillaris HOM05D002125 ORTHO05D002105 3.6e-06 56.2 109 30.3
TPR.G18060 Trifolium pratense HOM05D001219 ORTHO05D001017 3.6e-06 56.2 122 29.5
TWI32G0717 Tripterygium wilfordii HOM05D000530 ORTHO05D000621 3.6e-06 56.2 182 27.5
Carub.0006s3341 Capsella rubella HOM05D000710 ORTHO05D000336 4.7e-06 55.8 159 26.4
Hma1.2p1_0135F.1_g061780 Hydrangea macrophylla HOM05D001219 ORTHO05D001017 4.7e-06 55.8 90 33.3
TPR.G25741 Trifolium pratense HOM05D001219 ORTHO05D001017 4.7e-06 55.8 117 28.2
vmacro20333 Vaccinium macrocarpon HOM05D002125 ORTHO05D002105 4.7e-06 55.8 109 33.9
EL10Ac7g16789 Beta vulgaris HOM05D002125 ORTHO05D002105 6.2e-06 55.5 129 30.2
BcaB01g06117 Brassica carinata HOM05D002125 ORTHO05D002105 6.2e-06 55.5 103 35.0
C03p00270 Brassica napus HOM05D002125 ORTHO05D002105 6.2e-06 55.5 103 35.0
BolC3t12601H Brassica oleracea HOM05D002125 ORTHO05D002105 6.2e-06 55.5 103 35.0
Glyma.08G216300 Glycine max HOM05D001219 ORTHO05D001017 6.2e-06 55.5 151 24.5
MBI15_g03640_MAGBIO Magnolia biondii HOM05D002125 ORTHO05D002105 6.2e-06 55.5 109 33.9
MBI15_g19960_MAGBIO Magnolia biondii HOM05D002125 ORTHO05D002105 6.2e-06 55.5 109 33.9
TPR.G9688 Trifolium pratense HOM05D001219 ORTHO05D001017 6.2e-06 55.5 132 27.3
ClCG05G012800 Citrullus lanatus HOM05D000530 ORTHO05D000621 8.1e-06 55.1 193 24.9
Sabra03G0131300 Salix brachista HOM05D001219 ORTHO05D001017 8.1e-06 55.1 92 33.7
PGSC0003DMG400011864 Solanum tuberosum HOM05D002125 ORTHO05D002105 8.1e-06 55.1 129 33.3
TPR.G9673 Trifolium pratense HOM05D001219 ORTHO05D001017 8.1e-06 55.1 148 27.0


User provided reference genes

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