Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01561 Eucalyptus grandis HOM05D002930 ORTHO05D003283 7.8e-42 173.3 85 100.0
Eucgr.H01545 Eucalyptus grandis HOM05D002930 ORTHO05D003283 2.3e-17 92.0 60 76.7
MD03G1271800 Malus domestica HOM05D002930 ORTHO05D003283 2.8e-15 85.1 55 70.9
Prupe.8G248000 Prunus persica HOM05D002930 ORTHO05D003283 3.7e-15 84.7 55 69.1
FvH4_2g24180 Fragaria vesca HOM05D002930 ORTHO05D003283 8.2e-15 83.6 60 70.0
FAN24G0623 Fragaria x ananassa HOM05D002930 ORTHO05D003283 8.2e-15 83.6 60 70.0
MELO3C015874.2 Cucumis melo HOM05D002930 ORTHO05D003283 1.1e-14 83.2 60 66.7
MD11G1292400 Malus domestica HOM05D002930 ORTHO05D003283 1.4e-14 82.8 55 70.9
FAN15G2723 Fragaria x ananassa HOM05D002930 ORTHO05D003283 2.4e-14 82.0 60 68.3
RcHm_v2.0_Chr6g0291991 Rosa chinensis HOM05D002930 ORTHO05D003283 2.4e-14 82.0 60 68.3
QL12p022973 Quercus lobata HOM05D002930 ORTHO05D003283 3.1e-14 81.6 55 74.5
Sed0024970 Sechium edule HOM05D002930 ORTHO05D003283 3.1e-14 81.6 60 63.3
ClCG09G006750 Citrullus lanatus HOM05D002930 ORTHO05D003283 6.9e-14 80.5 60 63.3
CsaV3_7G028480 Cucumis sativus L. HOM05D002930 ORTHO05D003283 9.0e-14 80.1 60 65.0
FAN27G1593 Fragaria x ananassa HOM05D002930 ORTHO05D003283 9.0e-14 80.1 60 68.3
Nitab4.5_0001323g0140 Nicotiana tabacum HOM05D002930 ORTHO05D003283 9.0e-14 80.1 55 69.1
Nitab4.5_0002927g0030 Nicotiana tabacum HOM05D002930 ORTHO05D003283 9.0e-14 80.1 55 69.1
Cfa006078 Carpinus fangiana HOM05D002930 ORTHO05D003283 1.2e-13 79.7 55 69.1
SalBow6G0735 Salvia bowleyana HOM05D002930 ORTHO05D003283 1.2e-13 79.7 55 67.3
SGA_v2.0_scaffold11G05785 Striga asiatica HOM05D002930 ORTHO05D003283 2.0e-13 79.0 55 63.6
CAN.G956.11 Capsicum annuum HOM05D002930 ORTHO05D003283 2.6e-13 78.6 55 67.3
Haze_04772 Corylus avellana HOM05D002930 ORTHO05D003283 2.6e-13 78.6 60 65.0
Solyc09g074110.4 Solanum lycopersicum HOM05D002930 ORTHO05D003283 3.4e-13 78.2 55 65.5
Sopen09g028930 Solanum pennellii HOM05D002930 ORTHO05D003283 3.4e-13 78.2 55 65.5
CiPaw.07G096000 Carya illinoinensis HOM05D002930 ORTHO05D003283 7.7e-13 77.0 60 63.3
Sed0017862 Sechium edule HOM05D002930 ORTHO05D003283 7.7e-13 77.0 60 61.7
PGR119G1041 Punica granatum HOM05D002930 ORTHO05D003283 1.0e-12 76.6 63 66.7
MSTRG.17432 Avicennia marina HOM05D002930 ORTHO05D003283 1.3e-12 76.3 55 65.5
CANSAT25G2793 Cannabis sativa HOM05D002930 ORTHO05D003283 1.3e-12 76.3 60 61.7
Aqoxy2G03186 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 1.7e-12 75.9 55 67.3
Oeu047489.1 Olea europaea HOM05D002930 ORTHO05D003283 1.7e-12 75.9 55 65.5
Thecc.01G286000 Theobroma cacao HOM05D002930 ORTHO05D003283 1.7e-12 75.9 55 65.5
Manes.05G071700 Manihot esculenta HOM05D002930 ORTHO05D003283 2.2e-12 75.5 55 67.3
Nn3g21179 Nelumbo nucifera HOM05D002930 ORTHO05D003283 2.2e-12 75.5 63 61.9
EL10Ac7g17191 Beta vulgaris HOM05D002930 ORTHO05D003283 2.9e-12 75.1 55 61.8
DCAR_012456 Daucus carota HOM05D002930 ORTHO05D003283 2.9e-12 75.1 63 55.6
TWI59G1251 Tripterygium wilfordii HOM05D002930 ORTHO05D003283 2.9e-12 75.1 55 61.8
HanXRQChr15g0466571 Helianthus annuus HOM05D002930 ORTHO05D003283 3.8e-12 74.7 60 58.3
MBI19_g21645_MAGBIO Magnolia biondii HOM05D002930 ORTHO05D003283 3.8e-12 74.7 56 64.3
Atru.chr5.1328 Acer truncatum HOM05D002930 ORTHO05D003283 5.0e-12 74.3 63 58.7
Migut.N02138 Erythranthe guttata HOM05D002930 ORTHO05D003283 6.5e-12 73.9 55 61.8
Peaxi162Scf00941g00113 Petunia axillaris HOM05D002930 ORTHO05D003283 6.5e-12 73.9 55 60.0
Ah.08g212870 Amaranthus hybridus HOM05D002930 ORTHO05D003283 8.5e-12 73.6 55 60.0
CSS0023451 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 8.5e-12 73.6 55 67.3
ECA236G2879 Erigeron canadensis HOM05D002930 ORTHO05D003283 8.5e-12 73.6 71 53.5
SGA_v2.0_scaffold172G39040 Striga asiatica HOM05D002930 ORTHO05D003283 1.1e-11 73.2 55 60.0
TAR365G0233 Trochodendron aralioides HOM05D002930 ORTHO05D003283 1.1e-11 73.2 55 61.8
Potri.014G137200 Populus trichocarpa HOM05D002930 ORTHO05D003283 1.4e-11 72.8 55 63.6
SalBow3G3307 Salvia bowleyana HOM05D002930 ORTHO05D003283 1.4e-11 72.8 55 60.0
Ciclev10018445m.g Citrus clementina HOM05D002930 ORTHO05D003283 1.9e-11 72.4 55 61.8
Lsat_1_v5_gn_8_55460 Lactuca sativa HOM05D002930 ORTHO05D003283 1.9e-11 72.4 55 60.0
Lsat_1_v5_gn_9_1821 Lactuca sativa HOM05D002930 ORTHO05D003283 1.9e-11 72.4 55 58.2
Rhsim01G0277700 Rhododendron simsii HOM05D002930 ORTHO05D003283 1.9e-11 72.4 55 61.8
CSS0004978 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 2.5e-11 72.0 55 61.8
ECA247G2962 Erigeron canadensis HOM05D002930 ORTHO05D003283 2.5e-11 72.0 56 58.9
Lj5g0012178 Lotus japonicus HOM05D002930 ORTHO05D003283 2.5e-11 72.0 57 64.9
vmacro14944 Vaccinium macrocarpon HOM05D002930 ORTHO05D003283 2.5e-11 72.0 55 61.8
Dinv11268 Davidia involucrata HOM05D002930 ORTHO05D003283 3.2e-11 71.6 55 63.6
GSVIVG01011059001 Vitis vinifera HOM05D002930 ORTHO05D003283 3.2e-11 71.6 55 63.6
Gohir.D11G124400 Gossypium hirsutum HOM05D002930 ORTHO05D003283 4.2e-11 71.2 54 63.0
Gorai.007G133300 Gossypium raimondii HOM05D002930 ORTHO05D003283 4.2e-11 71.2 54 63.0
PSO210G3942 Papaver somniferum HOM05D002930 ORTHO05D003283 4.2e-11 71.2 62 58.1
DCAR_018381 Daucus carota HOM05D002930 ORTHO05D003283 5.5e-11 70.9 60 56.7
HanXRQChr04g0117981 Helianthus annuus HOM05D002930 ORTHO05D003283 5.5e-11 70.9 71 52.1
Actinidia05730 Actinidia chinensis HOM05D002930 ORTHO05D003283 7.2e-11 70.5 55 60.0
AL4G47650 Arabidopsis lyrata HOM05D002930 ORTHO05D003283 7.2e-11 70.5 56 62.5
PSO170G5253 Papaver somniferum HOM05D002930 ORTHO05D003283 7.2e-11 70.5 60 63.3
PSO302G0276 Papaver somniferum HOM05D002930 ORTHO05D003283 7.2e-11 70.5 60 63.3
Duzib138G0507 Durio zibethinus HOM05D002930 ORTHO05D003283 9.4e-11 70.1 54 63.0
Lalb_Chr21g0306621 Lupinus albus HOM05D002930 ORTHO05D003283 9.4e-11 70.1 65 56.9
Actinidia21090 Actinidia chinensis HOM05D002930 ORTHO05D003283 1.2e-10 69.7 55 61.8
Gohir.D08G203100 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.2e-10 69.7 54 63.0
SHI15439 Sapria himalayana HOM05D002930 ORTHO05D003283 1.2e-10 69.7 56 58.9
Sp4g29950 Schrenkiella parvula HOM05D002930 ORTHO05D003283 1.2e-10 69.7 56 60.7
BNapus_Darmor_BZH_scaffold_188p00030 Brassica napus HOM05D002930 ORTHO05D003283 1.6e-10 69.3 56 58.9
BolSC55t61233H Brassica oleracea HOM05D002930 ORTHO05D003283 1.6e-10 69.3 56 58.9
BcaB02g08731 Brassica carinata HOM05D002930 ORTHO05D003283 2.1e-10 68.9 56 60.7
Cpa.g.sc9.131 Carica papaya HOM05D002930 ORTHO05D003283 2.1e-10 68.9 55 61.8
Sabra14G0103600 Salix brachista HOM05D002930 ORTHO05D003283 2.1e-10 68.9 55 63.6
Hund05360 Selenicereus undatus HOM05D002930 ORTHO05D003283 2.1e-10 68.9 55 58.2
A05p00070 Brassica napus HOM05D002930 ORTHO05D003283 2.7e-10 68.6 56 58.9
BraA05t19003Z Brassica rapa HOM05D002930 ORTHO05D003283 2.7e-10 68.6 56 58.9
Carub.0004s3076 Capsella rubella HOM05D002930 ORTHO05D003283 2.7e-10 68.6 56 60.7
CARHR143440 Cardamine hirsuta HOM05D002930 ORTHO05D003283 2.7e-10 68.6 56 58.9
AUR62033688 Chenopodium quinoa HOM05D002930 ORTHO05D003283 2.7e-10 68.6 55 54.5
Thhalv10001278m.g Eutrema salsugineum HOM05D002930 ORTHO05D003283 2.7e-10 68.6 56 60.7
AUR62036777 Chenopodium quinoa HOM05D002930 ORTHO05D003283 3.6e-10 68.2 55 54.5
Gohir.A08G184980 Gossypium hirsutum HOM05D002930 ORTHO05D003283 3.6e-10 68.2 54 61.1
Gorai.004G215100 Gossypium raimondii HOM05D002930 ORTHO05D003283 3.6e-10 68.2 54 61.1
Lj1A43T58 Lonicera japonica HOM05D002930 ORTHO05D003283 3.6e-10 68.2 55 61.8
unitig_744.g24487 Utricularia gibba HOM05D002930 ORTHO05D003283 3.6e-10 68.2 63 52.4
THA.LOC104802222 Tarenaya hassleriana HOM05D002930 ORTHO05D003283 4.6e-10 67.8 55 61.8
Gohir.A11G119600 Gossypium hirsutum HOM05D002930 ORTHO05D003283 6.1e-10 67.4 54 61.1
AT2G48060 Arabidopsis thaliana HOM05D002930 ORTHO05D003283 7.9e-10 67.0 56 60.7
ATR0626G265 Amborella trichopoda HOM05D002930 ORTHO05D003283 1.0e-09 66.6 56 62.5
BraA04t18952Z Brassica rapa HOM05D002930 ORTHO05D003283 1.4e-09 66.2 56 57.1
arahy.Tifrunner.gnm1.ann1.M1RB0X Arachis hypogaea HOM05D002930 ORTHO05D003283 1.8e-09 65.9 72 51.4
CSS0031973 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 1.8e-09 65.9 60 55.0
Sc05g0005220 Simmondsia chinensis HOM05D002930 ORTHO05D003283 1.8e-09 65.9 55 56.4
GSVIVG01022038001 Vitis vinifera HOM05D002930 ORTHO05D003283 1.8e-09 65.9 55 56.4
BolC4t28786H Brassica oleracea HOM05D002930 ORTHO05D003283 2.3e-09 65.5 56 57.1
Hma1.2p1_0628F.1_g191750 Hydrangea macrophylla HOM05D002930 ORTHO05D003283 2.3e-09 65.5 54 59.3
Hma1.2p1_2318F.1_g319800 Hydrangea macrophylla HOM05D002930 ORTHO05D003283 2.3e-09 65.5 54 59.3
Medtr1g089760 Medicago truncatula HOM05D002930 ORTHO05D003283 3.0e-09 65.1 65 56.9
TPR.G13301 Trifolium pratense HOM05D002930 ORTHO05D003283 3.0e-09 65.1 55 60.0
Psat6g169840 Pisum sativum HOM05D002930 ORTHO05D003283 5.1e-09 64.3 84 47.6
Zm00001eb131990 Zea mays HOM05D002930 ORTHO05D003283 5.1e-09 64.3 60 56.7
VMungo0720G1730 Vigna mungo HOM05D002930 ORTHO05D003283 6.7e-09 63.9 63 54.0
Glyma.02G150200 Glycine max HOM05D002930 ORTHO05D003283 8.8e-09 63.5 63 52.4
Dinv40246 Davidia involucrata HOM05D002930 ORTHO05D003283 1.1e-08 63.2 55 52.7
Glyma.10G023700 Glycine max HOM05D002930 ORTHO05D003283 1.1e-08 63.2 63 50.8
Ah.04g159840 Amaranthus hybridus HOM05D002930 ORTHO05D003283 1.5e-08 62.8 56 55.4
HPP92_025233 Vanilla planifolia HOM05D002930 ORTHO05D003283 1.5e-08 62.8 56 57.1
Thecc.05G299700 Theobroma cacao HOM05D002930 ORTHO05D003283 1.9e-08 62.4 55 60.0
Phvul.007G168500 Phaseolus vulgaris HOM05D002930 ORTHO05D003283 2.5e-08 62.0 63 50.8
Aa31LG10G16860 Aethionema arabicum HOM05D002930 ORTHO05D003283 3.3e-08 61.6 56 51.8
Aa31LG1G29470 Aethionema arabicum HOM05D002930 ORTHO05D003283 3.3e-08 61.6 56 55.4
Lalb_Chr04g0260861 Lupinus albus HOM05D002930 ORTHO05D003283 3.3e-08 61.6 60 51.7
Aqoxy5G00565 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 7.4e-08 60.5 55 56.4
Duzib177G0642 Durio zibethinus HOM05D002930 ORTHO05D003283 7.4e-08 60.5 55 58.2
COL.COLO4_13526 Corchorus olitorius HOM05D002930 ORTHO05D003283 1.3e-07 59.7 60 51.7
HPP92_017201 Vanilla planifolia HOM05D002930 ORTHO05D003283 1.7e-07 59.3 56 57.1
Lj1g0027310 Lotus japonicus HOM05D002930 ORTHO05D003283 2.2e-07 58.9 55 58.2
CANSAT54G0439 Cannabis sativa HOM05D002930 ORTHO05D003283 4.8e-07 57.8 55 50.9
Lj9C680G12 Lonicera japonica HOM05D002930 ORTHO05D003283 6.3e-07 57.4 55 47.3
Glyma.19G238300 Glycine max HOM05D002930 ORTHO05D003283 1.1e-06 56.6 55 56.4
DCAR_022250 Daucus carota HOM05D002930 ORTHO05D003283 1.8e-06 55.8 55 50.9
Phvul.006G095000 Phaseolus vulgaris HOM05D002930 ORTHO05D003283 2.4e-06 55.5 55 54.5
VMungo0540G0500 Vigna mungo HOM05D002930 ORTHO05D003283 3.1e-06 55.1 55 54.5
TPR.G33213 Trifolium pratense HOM05D002930 ORTHO05D003283 4.1e-06 54.7 63 50.8
Potri.005G037700 Populus trichocarpa HOM05D002930 ORTHO05D003283 9.1e-06 53.5 63 50.8


User provided reference genes

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