Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 0.0e+00 1193.3 634 100.0
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 1.7e-104 384.4 672 42.4
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 2.9e-101 373.6 702 41.5
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 1.1e-100 371.7 652 43.7
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 5.6e-100 369.4 643 42.8
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.1e-99 367.5 643 42.8
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 6.2e-99 365.9 649 43.1
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 6.2e-99 365.9 681 42.6
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 8.0e-99 365.5 714 39.6
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 1.5e-97 361.3 653 41.7
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 8.3e-96 355.5 646 40.2
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 8.3e-96 355.5 598 44.3
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 1.1e-95 355.1 695 39.1
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 4.1e-95 353.2 570 43.5
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.7e-94 350.5 643 41.8
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.7e-93 347.8 610 43.9
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 9.5e-92 342.0 652 39.9
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 1.6e-91 341.3 678 39.1
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 1.6e-91 341.3 655 41.2
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 4.7e-91 339.7 609 43.3
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 6.2e-91 339.3 659 39.3
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.8e-90 337.8 677 39.6
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 5.2e-90 336.3 810 36.8
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 6.8e-90 335.9 625 41.6
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 2.0e-89 334.3 659 40.7
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 1.3e-88 331.6 674 38.4
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 3.7e-88 330.1 662 39.3
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 4.9e-88 329.7 656 39.6
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 3.2e-87 327.0 650 39.7
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 3.2e-87 327.0 651 39.9
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 4.1e-87 326.6 659 38.2
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 3.5e-86 323.6 665 39.4
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 6.6e-85 319.3 611 41.7
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 8.6e-85 318.9 331 56.8
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 1.5e-84 318.2 674 38.6
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 2.5e-84 317.4 634 40.2
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 3.3e-84 317.0 654 39.9
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 4.3e-84 316.6 643 40.3
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 1.2e-83 315.1 356 53.4
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 1.2e-83 315.1 643 39.2
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.6e-83 314.7 635 39.1
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 4.7e-83 313.2 652 37.1
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 4.7e-83 313.2 674 39.3
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.4e-82 311.6 580 42.6
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.4e-82 311.6 646 39.0
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 4.0e-82 310.1 636 39.5
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 5.2e-82 309.7 662 38.1
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 6.8e-82 309.3 638 39.8
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.5e-81 308.1 656 38.6
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 1.5e-81 308.1 676 38.9
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 2.0e-81 307.8 607 40.9
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 2.0e-81 307.8 610 41.6
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 2.6e-81 307.4 699 37.5
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 4.4e-81 306.6 380 50.5
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 4.4e-81 306.6 564 42.7
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 5.8e-81 306.2 580 41.4
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 3.7e-80 303.5 348 53.2
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 3.7e-80 303.5 634 37.9
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 3.7e-80 303.5 637 37.2
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.4e-79 301.6 637 38.8
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.9e-79 301.2 635 40.0
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.2e-79 300.4 649 39.8
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 4.1e-79 300.1 649 38.7
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 4.1e-79 300.1 633 39.2
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 9.2e-79 298.9 640 38.1
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.5e-78 297.0 658 38.3
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 6.0e-78 296.2 626 38.3
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 7.8e-78 295.8 544 44.5
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 3.0e-77 293.9 581 38.9
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 3.9e-77 293.5 660 38.3
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 5.1e-77 293.1 640 37.8
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 1.1e-76 292.0 596 39.1
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 1.5e-76 291.6 661 36.2
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 1.9e-76 291.2 645 37.2
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.6e-75 288.1 747 34.3
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 1.6e-75 288.1 668 38.0
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 2.1e-75 287.7 651 36.7
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 6.2e-75 286.2 644 37.7
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 2.4e-74 284.3 661 36.5
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 5.2e-74 283.1 647 37.2
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 8.9e-74 282.3 574 38.9
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.6e-73 280.8 626 37.9
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 5.8e-73 279.6 629 35.6
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.7e-72 278.1 626 37.2
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.7e-72 278.1 651 37.2
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.9e-72 277.3 628 38.5
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 8.4e-72 275.8 681 35.5
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 1.1e-71 275.4 640 37.7
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 1.4e-71 275.0 641 37.8
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 4.2e-71 273.5 632 35.1
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 5.4e-71 273.1 410 45.9
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 9.3e-71 272.3 646 36.2
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 1.2e-70 271.9 370 47.0
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 1.6e-70 271.6 632 34.8
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.7e-70 270.8 545 40.2
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 4.6e-70 270.0 677 34.3
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 1.7e-69 268.1 270 59.3
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 6.6e-69 266.2 295 53.9
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 2.5e-68 264.2 677 35.2
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 2.5e-68 264.2 584 38.5
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 2.5e-68 264.2 637 35.5
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 4.3e-68 263.5 639 37.1
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 9.6e-68 262.3 642 35.8
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 2.4e-66 257.7 644 36.0
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 9.0e-66 255.8 653 34.6
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 1.5e-65 255.0 637 35.2
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 2.0e-65 254.6 320 47.2
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 2.6e-65 254.2 606 36.5
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 4.9e-64 250.0 707 33.7
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 9.3e-63 245.7 582 38.3
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 9.3e-63 245.7 276 55.8
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 9.3e-63 245.7 276 55.8
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.6e-62 245.0 635 33.5
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 3.5e-62 243.8 641 36.0
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 1.1e-60 238.8 265 53.6
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 5.6e-60 236.5 529 36.9
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 4.8e-59 233.4 591 35.5
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 8.1e-59 232.6 563 37.1
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 2.0e-57 228.0 632 33.1
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 2.6e-57 227.6 551 35.8
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 3.4e-57 227.3 630 33.2
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 3.2e-55 220.7 663 32.6
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 5.5e-55 219.9 473 38.5
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 9.3e-55 219.2 639 32.2
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 9.3e-55 219.2 481 38.5
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 2.7e-54 217.6 630 32.2
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 6.0e-54 216.5 565 33.3
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 1.0e-53 215.7 584 34.6
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 1.8e-53 214.9 636 31.9
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 6.7e-53 213.0 479 38.4
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 1.3e-51 208.8 565 34.3
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 8.1e-51 206.1 214 53.7
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.5e-49 201.8 610 33.1
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 1.5e-49 201.8 576 33.2
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 7.6e-49 199.5 573 32.8
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 1.9e-47 194.9 217 57.1
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 3.2e-47 194.1 217 56.7
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 1.3e-43 182.2 591 31.5
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 3.1e-42 177.6 572 30.6
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 3.4e-41 174.1 192 52.6
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.1e-39 169.1 632 32.0
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 5.5e-39 166.8 256 41.0
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 7.2e-39 166.4 222 43.2
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.5e-33 147.1 190 47.9
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 5.0e-32 143.7 230 43.5
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 1.6e-30 138.7 629 26.4
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 2.3e-29 134.8 223 38.6
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 2.4e-26 124.8 605 26.1
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 4.1e-26 124.0 189 44.4
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 6.9e-26 123.2 249 35.3
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 3.4e-25 120.9 101 68.3
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 6.5e-24 116.7 173 45.1
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 1.4e-23 115.5 122 58.2
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 7.2e-23 113.2 226 38.9
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 1.0e-21 109.4 79 73.4
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.4e-20 104.0 226 35.4
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.8e-19 100.5 179 38.0
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 2.9e-16 91.3 91 54.9
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 3.6e-14 84.3 522 25.1
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.4e-13 82.4 76 63.2
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 2.3e-13 81.6 76 56.6
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 1.1e-12 79.3 90 52.2
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 4.4e-12 77.4 176 40.3
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 7.5e-12 76.6 367 29.4
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 9.7e-12 76.3 155 40.0
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 8.2e-11 73.2 68 60.3
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 3.1e-10 71.2 207 30.0
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 5.3e-10 70.5 82 52.4
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 9.1e-10 69.7 141 38.3
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 1.2e-09 69.3 48 66.7
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 1.2e-09 69.3 48 66.7
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.5e-09 67.8 162 37.0
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.3e-08 65.9 396 25.5
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.7e-08 65.5 104 41.3
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 2.9e-08 64.7 98 40.8
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 1.1e-07 62.8 151 37.1
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 3.2e-07 61.2 80 43.8
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 4.2e-07 60.8 46 60.9
C03p61050 Brassica napus HOM05D008017 ORTHO05D009829 7.2e-07 60.1 46 63.0
BolC3t18367H Brassica oleracea HOM05D008017 ORTHO05D009829 7.2e-07 60.1 46 63.0
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 9.4e-07 59.7 46 58.7
Sp2g28160 Schrenkiella parvula HOM05D008017 ORTHO05D009829 1.2e-06 59.3 92 41.3
BraA06t26123Z Brassica rapa HOM05D008017 ORTHO05D009829 1.6e-06 58.9 54 53.7
MBI19_g13735_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 2.1e-06 58.5 73 53.4
A06p31900 Brassica napus HOM05D008017 ORTHO05D009829 2.7e-06 58.2 54 53.7
CARHR293790 Cardamine hirsuta HOM05D004018 ORTHO05D009829 4.7e-06 57.4 46 54.3
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 4.7e-06 57.4 108 37.0


User provided reference genes

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