Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 4.3e-285 984.2 575 100.0
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 4.1e-219 765.0 523 75.0
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.2e-210 736.9 523 73.4
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 7.3e-208 727.6 523 72.8
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 7.3e-208 727.6 523 72.3
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 7.3e-208 727.6 523 72.8
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.1e-207 726.1 523 71.9
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.8e-207 725.7 524 72.3
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.1e-206 723.8 523 72.1
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 1.4e-203 713.4 520 72.5
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 5.1e-201 704.9 521 70.1
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 6.6e-201 704.5 481 73.8
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 9.6e-200 700.7 521 69.5
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 2.8e-199 699.1 520 70.2
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 3.6e-199 698.7 518 70.3
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 2.0e-197 693.0 521 69.9
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 3.4e-197 692.2 477 74.0
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 5.8e-197 691.4 527 70.8
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 3.8e-196 688.7 521 68.7
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 1.4e-195 686.8 521 68.5
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 1.9e-195 686.4 521 68.5
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 9.3e-195 684.1 515 69.3
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 9.3e-195 684.1 515 69.3
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.2e-194 683.7 515 69.3
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 2.7e-194 682.6 517 68.9
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 7.8e-194 681.0 523 67.3
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 3.9e-193 678.7 521 68.3
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.1e-193 678.3 515 69.1
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 2.5e-192 676.0 523 68.3
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 3.3e-192 675.6 521 67.9
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 7.3e-192 674.5 517 68.3
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 1.3e-191 673.7 482 71.4
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 4.8e-191 671.8 521 67.8
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 1.4e-190 670.2 482 71.2
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 1.8e-190 669.8 518 67.4
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.4e-190 669.5 560 64.5
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 3.1e-190 669.1 523 66.7
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 6.9e-190 667.9 482 71.0
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.2e-189 667.2 516 68.4
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 3.2e-187 659.1 519 66.7
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 3.5e-186 655.6 522 66.1
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 3.0e-185 652.5 553 64.2
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 6.2e-183 644.8 523 64.6
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 6.2e-183 644.8 483 68.5
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 4.0e-182 642.1 521 63.9
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 6.9e-182 641.3 499 67.3
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 9.9e-181 637.5 518 64.9
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 2.4e-179 632.9 523 64.4
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 4.6e-178 628.6 526 66.0
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 7.9e-178 627.9 515 63.7
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 5.1e-177 625.2 476 68.5
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 1.1e-176 624.0 492 66.1
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 3.3e-176 622.5 422 75.1
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 1.2e-173 614.0 523 64.2
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 2.2e-172 609.8 482 65.4
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 7.1e-171 604.7 504 64.9
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 3.0e-169 599.4 523 61.6
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 1.9e-168 596.7 477 67.3
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 5.7e-168 595.1 515 61.0
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.7e-164 583.6 519 61.3
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 2.9e-164 582.8 544 59.2
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 2.7e-162 576.2 522 58.6
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 7.4e-160 568.2 514 60.1
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 4.1e-158 562.4 477 61.0
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 2.2e-156 556.6 472 62.1
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 5.9e-149 531.9 475 60.6
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.0e-148 531.2 403 70.0
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 1.0e-148 531.2 475 61.1
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 1.3e-148 530.8 480 59.6
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.3e-148 530.8 477 60.2
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 4.7e-146 522.3 407 67.6
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 6.7e-145 518.5 521 56.0
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.8e-143 513.1 448 61.8
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 4.0e-137 492.7 504 55.8
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 5.3e-134 482.3 477 54.3
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 2.9e-132 476.5 418 58.4
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 2.3e-129 466.8 505 54.3
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.7e-127 459.5 342 67.8
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 4.2e-123 446.0 352 65.1
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 3.6e-122 443.0 334 70.1
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 4.5e-117 426.0 423 55.6
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 6.6e-108 395.6 407 54.8
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 7.1e-94 349.0 362 57.5
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 8.1e-90 335.5 417 47.7
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 3.9e-84 316.6 434 44.7
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 7.8e-77 292.4 408 42.2
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 7.8e-77 292.4 415 42.2
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.6e-74 284.6 433 41.6
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.1e-73 282.0 443 40.9
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 3.1e-73 280.4 410 40.5
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 9.0e-73 278.9 202 69.8
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 2.6e-72 277.3 407 40.5
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.6e-72 275.8 408 41.9
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 1.3e-71 275.0 415 40.5
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.4e-70 271.6 430 42.3
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.4e-70 269.6 430 40.7
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 9.3e-70 268.9 425 39.8
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 3.5e-69 266.9 227 62.1
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 4.6e-69 266.5 408 39.7
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.0e-68 265.4 378 42.3
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 1.0e-68 265.4 429 40.3
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 7.4e-67 259.2 411 38.9
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.1e-66 257.7 407 41.0
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.8e-66 256.5 444 37.4
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 8.1e-66 255.8 451 38.6
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 3.1e-65 253.8 418 40.4
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 2.6e-64 250.8 414 40.6
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.3e-63 248.4 407 39.3
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 1.4e-62 245.0 408 38.7
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.2e-62 243.4 347 43.8
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 5.5e-62 243.0 413 40.7
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 7.1e-62 242.7 406 38.4
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 9.3e-62 242.3 386 38.9
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 9.3e-62 242.3 408 38.5
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 1.6e-61 241.5 386 39.1
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 2.7e-61 240.7 409 39.1
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 1.0e-60 238.8 482 36.9
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 3.0e-60 237.3 403 39.2
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 3.9e-60 236.9 413 39.0
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 6.2e-58 229.6 423 37.6
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 4.0e-57 226.9 410 36.8
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 2.2e-55 221.1 167 67.1
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 1.1e-54 218.8 471 35.9
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 1.9e-54 218.0 350 37.7
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 2.7e-53 214.2 554 33.2
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 1.3e-52 211.8 376 38.0
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 1.8e-52 211.5 410 35.6
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 2.5e-51 207.6 381 35.2
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 2.8e-50 204.1 378 37.8
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 4.5e-48 196.8 377 36.1
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 9.7e-43 179.1 150 58.7
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.3e-42 178.7 375 36.0
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.6e-40 171.0 269 39.0
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 3.8e-39 167.2 373 32.7
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 9.4e-38 162.5 260 38.8
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.0e-36 159.1 218 44.0
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.6e-35 154.5 373 31.9
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 3.3e-35 154.1 92 80.4
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.8e-33 148.3 236 38.1
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 1.3e-31 142.1 189 49.2
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 1.7e-31 141.7 108 62.0
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.0e-31 140.2 252 38.9
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 4.4e-27 127.1 176 39.8
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 9.1e-25 119.4 164 39.6
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 8.5e-23 112.8 128 50.8
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.5e-22 112.1 253 35.6
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 2.5e-22 111.3 165 41.8
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 2.7e-21 107.8 122 51.6
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 6.7e-20 103.2 60 80.0
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 5.7e-19 100.1 145 44.8
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.7e-18 97.4 105 48.6
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.4e-17 95.5 117 39.3
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 2.4e-17 94.7 339 27.7
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 2.4e-17 94.7 143 42.7
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 4.1e-17 94.0 314 28.0
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.7e-16 91.3 74 66.2
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 3.5e-16 90.9 65 63.1
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.2e-15 88.2 64 70.3
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 5.0e-15 87.0 301 27.2
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 4.2e-14 84.0 104 41.3
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 5.5e-14 83.6 56 73.2
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 7.2e-14 83.2 152 36.2
Thhalv10015673m.g Eutrema salsugineum HOM05D003798 ORTHO05D023659 9.4e-14 82.8 330 25.5
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 2.3e-12 78.2 59 62.7
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.0e-12 77.8 139 34.5
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 3.0e-12 77.8 62 59.7
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 5.2e-12 77.0 89 52.8
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 1.5e-11 75.5 123 35.0
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 2.2e-10 71.6 61 59.0
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 2.8e-10 71.2 135 37.0
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 1.1e-09 69.3 106 38.7
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 1.4e-09 68.9 60 56.7
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 7.0e-09 66.6 123 31.7
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.2e-08 65.9 64 50.0
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 2.3e-07 61.6 133 36.1
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 6.5e-07 60.1 65 50.8
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 8.6e-07 59.7 104 36.5
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 3.2e-06 57.8 70 45.7
Medtr7g094400 Medicago truncatula HOM05D003798 ORTHO05D004652 4.2e-06 57.4 42 61.9
Actinidia00760 Actinidia chinensis HOM05D003798 ORTHO05D004652 5.5e-06 57.0 49 57.1
Lsat_1_v5_gn_8_129341 Lactuca sativa HOM05D003798 ORTHO05D004652 9.5e-06 56.2 96 40.6


User provided reference genes

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