Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 6.7e-111 404.1 207 100.0
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 7.0e-52 208.0 218 61.0
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 1.1e-49 200.7 222 57.2
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.6e-48 196.8 215 56.7
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 1.0e-47 194.1 219 54.8
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 1.4e-47 193.7 209 55.0
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 1.4e-47 193.7 210 56.2
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 5.2e-47 191.8 209 55.5
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.5e-46 190.3 207 57.5
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 2.0e-46 189.9 212 54.7
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 3.4e-46 189.1 221 55.7
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 4.4e-46 188.7 218 56.0
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 9.8e-46 187.6 215 55.3
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 1.7e-45 186.8 219 56.2
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 1.7e-45 186.8 219 53.4
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 2.2e-45 186.4 211 55.5
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 2.8e-45 186.0 220 55.9
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 3.7e-45 185.7 217 55.3
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 6.3e-45 184.9 226 51.8
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 1.1e-44 184.1 219 55.7
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.4e-44 183.7 217 54.4
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.4e-44 183.7 210 55.2
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 1.4e-44 183.7 222 53.6
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 3.1e-44 182.6 219 53.4
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 4.1e-44 182.2 207 54.6
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 5.4e-44 181.8 223 52.9
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 9.2e-44 181.0 224 52.2
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 9.2e-44 181.0 221 53.4
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.6e-43 180.3 214 54.2
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.0e-43 179.9 214 54.2
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 2.0e-43 179.9 210 53.8
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 2.0e-43 179.9 212 53.8
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 3.5e-43 179.1 217 53.9
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.0e-42 177.6 225 52.0
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 1.0e-42 177.6 222 53.6
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.7e-42 176.8 225 52.0
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 3.8e-42 175.6 216 52.3
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 5.0e-42 175.3 215 54.0
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 6.6e-42 174.9 215 54.0
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 1.5e-41 173.7 223 54.3
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.5e-41 173.7 209 53.1
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 2.5e-41 172.9 225 50.2
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 4.3e-41 172.2 229 48.9
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 5.6e-41 171.8 208 51.0
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 9.5e-41 171.0 234 48.7
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.2e-40 170.6 210 52.9
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 1.6e-40 170.2 210 52.4
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 2.1e-40 169.9 212 52.8
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.1e-40 169.9 203 51.7
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 3.6e-40 169.1 208 51.0
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 3.6e-40 169.1 223 49.3
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 4.7e-40 168.7 225 49.8
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 8.0e-40 167.9 216 50.5
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 8.0e-40 167.9 215 51.6
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.0e-39 167.5 223 49.3
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 1.8e-39 166.8 216 49.5
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 1.8e-39 166.8 235 50.2
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 3.0e-39 166.0 218 50.0
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 3.0e-39 166.0 216 50.9
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 4.0e-39 165.6 214 53.7
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 5.2e-39 165.2 208 51.0
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 6.8e-39 164.9 220 50.5
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 6.8e-39 164.9 209 51.7
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 8.9e-39 164.5 219 50.7
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.5e-38 163.7 208 51.9
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 1.5e-38 163.7 209 48.8
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 1.5e-38 163.7 209 48.8
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.5e-38 163.7 223 48.4
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 2.0e-38 163.3 218 49.1
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 3.4e-38 162.5 208 52.9
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 7.5e-38 161.4 208 49.0
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 9.8e-38 161.0 216 50.0
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.7e-37 159.1 212 50.0
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 3.7e-37 159.1 210 51.0
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 6.4e-37 158.3 207 49.8
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 6.4e-37 158.3 225 48.0
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 8.3e-37 157.9 193 48.7
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 8.3e-37 157.9 220 50.5
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 2.4e-36 156.4 209 48.3
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 5.4e-36 155.2 233 48.1
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 7.0e-36 154.8 220 50.0
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 9.2e-36 154.5 208 49.5
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 9.2e-36 154.5 208 48.1
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 2.7e-35 152.9 207 47.8
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 6.0e-35 151.8 256 43.4
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.0e-34 151.0 214 46.7
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.0e-34 151.0 212 48.6
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.3e-34 150.6 212 47.6
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 1.3e-34 150.6 223 48.0
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 3.9e-34 149.1 209 49.3
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 5.0e-34 148.7 222 46.8
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 5.0e-34 148.7 221 47.1
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 8.6e-34 147.9 215 45.6
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 1.9e-33 146.7 205 46.8
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 2.5e-33 146.4 211 47.9
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 5.6e-33 145.2 214 45.3
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 7.3e-33 144.8 226 44.7
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 2.1e-32 143.3 215 48.4
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 2.1e-32 143.3 216 46.8
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 2.8e-32 142.9 223 44.4
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 2.8e-32 142.9 196 48.5
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 3.6e-32 142.5 214 46.7
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 4.7e-32 142.1 213 46.5
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 8.0e-32 141.4 214 45.8
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 1.4e-31 140.6 195 48.7
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 2.3e-31 139.8 223 43.5
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.3e-31 139.8 214 46.3
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 2.3e-31 139.8 247 42.1
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 3.1e-31 139.4 163 52.1
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 3.1e-31 139.4 221 42.5
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 4.0e-31 139.0 217 47.0
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 5.2e-31 138.7 230 43.9
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 6.8e-31 138.3 176 51.1
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 8.9e-31 137.9 218 42.2
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 2.0e-30 136.7 212 45.3
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 2.6e-30 136.3 223 43.5
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 3.4e-30 136.0 216 44.4
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 3.4e-30 136.0 204 47.1
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 7.5e-30 134.8 218 44.5
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 7.5e-30 134.8 213 41.8
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 7.5e-30 134.8 218 42.7
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 1.7e-29 133.7 235 43.0
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 4.9e-29 132.1 217 44.2
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 6.4e-29 131.7 219 44.3
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 6.4e-29 131.7 219 45.2
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 1.1e-28 131.0 208 44.2
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 7.0e-28 128.3 217 43.8
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 9.2e-28 127.9 210 43.3
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 1.6e-27 127.1 210 42.9
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 1.6e-27 127.1 209 43.5
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 2.7e-27 126.3 205 42.4
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 4.6e-27 125.6 213 43.7
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.0e-26 124.4 205 44.4
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 3.0e-26 122.9 211 40.8
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 3.0e-26 122.9 211 40.8
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 8.6e-26 121.3 206 43.7
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 3.3e-25 119.4 205 43.4
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 9.5e-25 117.9 180 43.9
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 6.2e-24 115.2 177 44.6
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 8.1e-24 114.8 301 31.9
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 4.0e-23 112.5 209 42.1
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.2e-22 110.9 210 40.0
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 1.2e-22 110.9 207 40.1
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 1.5e-22 110.5 199 42.2
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 1.4e-20 104.0 150 48.7
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 2.4e-20 103.2 205 39.0
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 3.2e-20 102.8 205 39.0
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 9.2e-20 101.3 210 41.0
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 1.0e-18 97.8 212 38.7
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 8.6e-18 94.7 166 42.2
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 2.5e-17 93.2 196 38.8
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 2.5e-17 93.2 196 39.3
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 2.5e-17 93.2 205 38.0
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 7.3e-17 91.7 156 44.2
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 7.3e-17 91.7 166 39.8
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 2.1e-16 90.1 182 40.7
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 6.8e-15 85.1 89 57.3
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 2.9e-13 79.7 104 47.1
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 7.8e-11 71.6 64 56.2
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 1.0e-10 71.2 120 44.2
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.0e-10 71.2 128 41.4
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 1.1e-09 67.8 191 35.6
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 3.3e-09 66.2 44 70.5
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 1.4e-07 60.8 159 35.2
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 4.0e-07 59.3 82 52.4
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 1.2e-06 57.8 108 47.2
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 4.4e-06 55.8 90 44.4


User provided reference genes

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