Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 0.0e+00 1108.2 652 100.0
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 2.1e-187 659.8 694 59.2
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 3.0e-157 559.7 687 55.2
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 6.2e-155 552.0 691 51.4
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 3.8e-152 542.7 679 53.9
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 1.9e-148 530.4 685 50.4
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 4.8e-147 525.8 674 49.4
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 5.5e-143 512.3 679 51.1
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.6e-142 510.8 676 51.0
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 3.0e-141 506.5 680 47.9
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 3.9e-141 506.1 672 52.2
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 5.7e-140 502.3 677 49.3
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 5.7e-140 502.3 675 48.4
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 1.2e-137 494.6 660 50.9
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 5.0e-136 489.2 614 47.6
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 6.5e-136 488.8 686 47.4
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 3.2e-135 486.5 686 48.8
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 7.9e-134 481.9 707 44.0
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 7.9e-134 481.9 662 50.0
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 6.7e-133 478.8 689 46.7
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 8.7e-133 478.4 668 47.8
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 4.3e-132 476.1 711 46.0
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 4.8e-131 472.6 665 48.3
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 8.2e-131 471.9 705 45.8
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 4.1e-130 469.5 695 43.5
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 5.3e-130 469.2 674 48.7
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 4.5e-129 466.1 633 46.4
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 5.9e-129 465.7 705 45.8
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 5.9e-129 465.7 678 50.0
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 1.7e-128 464.2 662 49.7
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 1.4e-127 461.1 698 48.3
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 2.5e-127 460.3 712 45.4
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 5.5e-127 459.1 678 46.5
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 8.8e-125 451.8 694 50.0
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 2.6e-121 440.3 677 47.1
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 2.6e-121 440.3 686 45.3
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 5.9e-121 439.1 690 44.5
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 2.2e-120 437.2 687 50.2
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 6.5e-120 435.6 704 44.2
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 1.1e-119 434.9 700 44.3
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 1.9e-119 434.1 691 50.4
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 5.5e-119 432.6 666 44.7
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 4.7e-118 429.5 661 46.6
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 3.9e-117 426.4 682 44.0
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 6.7e-117 425.6 720 47.9
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 8.8e-117 425.2 699 49.2
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 9.7e-116 421.8 662 45.0
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 2.8e-115 420.2 673 46.8
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 3.5e-113 413.3 685 49.6
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 4.5e-113 412.9 667 43.5
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 1.0e-112 411.8 680 44.3
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 2.9e-112 410.2 545 50.5
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 8.5e-112 408.7 666 48.3
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 1.4e-109 401.4 682 43.3
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 1.8e-109 401.0 676 43.2
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 1.1e-108 398.3 642 41.7
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 7.5e-108 395.6 692 46.0
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 9.7e-108 395.2 633 46.0
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 1.7e-107 394.4 679 45.9
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 3.7e-107 393.3 719 42.8
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 5.3e-106 389.4 583 46.5
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 1.6e-105 387.9 595 44.5
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 1.6e-105 387.9 674 44.7
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 5.9e-105 386.0 664 42.6
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 5.9e-105 386.0 705 46.0
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 1.7e-104 384.4 664 41.6
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 3.2e-103 380.2 672 44.0
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 3.2e-103 380.2 674 43.8
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 7.2e-103 379.0 680 42.5
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 9.4e-103 378.6 697 45.3
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 6.8e-101 372.5 576 47.4
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 5.7e-100 369.4 675 43.6
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 1.7e-99 367.9 676 45.3
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 4.1e-98 363.2 676 42.5
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 5.4e-98 362.8 678 44.1
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 1.6e-97 361.3 673 43.1
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 8.5e-96 355.5 667 41.7
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 3.2e-95 353.6 666 41.4
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 4.0e-93 346.7 665 43.9
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 1.7e-91 341.3 562 45.0
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 6.3e-91 339.3 686 42.4
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.7e-88 331.3 658 41.0
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 1.5e-87 328.2 654 40.4
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 8.0e-86 322.4 660 38.8
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 2.3e-85 320.9 667 41.8
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 1.5e-84 318.2 580 42.4
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 3.4e-84 317.0 664 38.7
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 1.7e-83 314.7 666 41.0
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 2.7e-81 307.4 692 39.5
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 5.9e-81 306.2 664 41.7
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 3.9e-80 303.5 687 38.1
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 1.5e-79 301.6 687 37.7
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 1.9e-79 301.2 593 41.1
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 5.6e-79 299.7 678 38.1
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 1.6e-78 298.1 444 48.0
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 2.3e-77 294.3 658 39.5
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 1.2e-76 292.0 536 43.3
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 4.4e-76 290.0 666 41.3
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 3.7e-75 287.0 675 40.3
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 6.4e-75 286.2 654 35.0
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 1.1e-74 285.4 665 40.8
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 1.3e-72 278.5 716 39.9
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 3.9e-72 276.9 677 37.7
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 5.0e-72 276.6 677 37.5
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 6.8e-69 266.2 596 37.6
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 1.2e-68 265.4 493 41.0
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 2.6e-68 264.2 652 37.6
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 2.3e-64 251.1 702 36.2
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.1e-63 248.8 338 48.2
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.6e-60 237.7 457 38.9
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 9.9e-52 209.1 319 46.1
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 9.9e-52 209.1 274 49.3
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 7.8e-49 199.5 579 36.1
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 1.1e-47 195.7 375 45.3
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 5.6e-47 193.4 312 41.3
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 3.8e-43 180.6 614 34.9
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 3.2e-42 177.6 231 51.1
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 1.4e-34 152.1 661 31.0
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 1.4e-34 152.1 336 39.6
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 3.9e-32 144.1 212 45.3
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 9.6e-31 139.4 623 31.9
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 1.1e-29 136.0 666 29.0
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 4.5e-28 130.6 170 47.6
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 1.1e-26 125.9 162 49.4
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 6.9e-21 106.7 127 56.7
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 2.6e-20 104.8 127 55.1
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 2.2e-19 101.7 159 40.3
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 3.6e-17 94.4 616 27.8
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 2.3e-16 91.7 106 48.1
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 1.9e-15 88.6 568 27.6
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 4.8e-14 84.0 129 48.1
MD04G1246500 Malus domestica HOM05D005724 ORTHO05D006636 6.3e-14 83.6 130 48.5
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 6.9e-13 80.1 171 39.2
Nitab4.5_0005621g0100 Nicotiana tabacum HOM05D005724 ORTHO05D006636 3.7e-06 57.8 133 37.6


User provided reference genes

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