Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 0.0e+00 1270.0 637 100.0
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 4.4e-230 801.6 637 64.7
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 2.9e-221 772.3 635 62.0
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 2.4e-220 769.2 639 61.7
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 6.0e-219 764.6 632 60.4
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 1.3e-218 763.5 639 61.2
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 7.3e-217 757.7 642 61.4
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 8.1e-216 754.2 636 60.7
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 8.9e-215 750.7 634 61.2
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 1.2e-214 750.4 640 60.3
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.2e-214 750.4 640 60.3
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 2.0e-214 749.6 631 60.2
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 2.6e-214 749.2 640 60.6
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 2.2e-213 746.1 634 59.8
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 2.2e-213 746.1 633 58.8
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 8.3e-213 744.2 641 59.6
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 2.4e-212 742.7 630 60.6
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 3.2e-212 742.3 634 58.5
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 3.2e-212 742.3 633 60.3
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 3.2e-212 742.3 633 59.1
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 1.2e-211 740.3 643 57.9
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.2e-211 740.3 640 59.7
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 4.6e-211 738.4 632 59.3
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 2.3e-210 736.1 639 58.4
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 6.6e-210 734.6 632 59.0
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 1.5e-209 733.4 635 60.8
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 4.3e-209 731.9 518 70.3
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 3.6e-208 728.8 637 58.7
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 2.0e-206 723.0 507 70.8
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 3.8e-205 718.8 633 59.4
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 2.4e-204 716.1 658 57.1
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 2.1e-203 713.0 633 58.0
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 1.0e-202 710.7 644 57.6
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 1.3e-202 710.3 633 58.5
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 1.7e-202 709.9 630 59.0
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 2.5e-201 706.1 633 58.3
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 6.2e-200 701.4 633 57.8
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 1.5e-198 696.8 633 56.4
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 9.9e-198 694.1 639 57.4
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 8.4e-197 691.0 637 57.0
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 8.4e-197 691.0 637 57.0
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 1.9e-196 689.9 638 56.3
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 1.9e-196 689.9 631 55.3
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 5.4e-196 688.3 634 56.5
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 1.7e-194 683.3 637 58.1
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 2.3e-194 682.9 634 56.0
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 2.3e-194 682.9 641 54.9
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 1.5e-193 680.2 624 57.1
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 1.6e-192 676.8 610 56.2
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 3.6e-192 675.6 625 57.9
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 8.1e-192 674.5 649 55.5
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 4.0e-191 672.2 634 54.3
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 1.2e-190 670.6 637 54.3
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 1.5e-190 670.2 640 54.5
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 2.0e-190 669.8 441 73.7
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 2.6e-190 669.5 639 54.9
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 5.8e-190 668.3 640 56.1
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 9.9e-190 667.5 642 54.0
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 1.7e-189 666.8 644 54.2
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 1.4e-188 663.7 638 54.4
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 3.5e-187 659.1 643 53.7
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 7.9e-187 657.9 643 53.5
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 1.8e-186 656.8 620 56.3
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 1.9e-185 653.3 544 60.7
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 1.2e-182 644.0 643 53.3
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 5.8e-182 641.7 636 53.6
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.2e-181 639.8 659 53.7
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 8.4e-181 637.9 490 64.9
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 8.4e-181 637.9 490 64.9
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 1.4e-180 637.1 615 54.3
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 1.2e-179 634.0 441 69.4
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 4.6e-179 632.1 644 53.6
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 1.3e-178 630.6 637 52.9
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 1.1e-177 627.5 636 51.7
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 3.1e-175 619.4 641 52.7
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 3.4e-174 615.9 586 54.1
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 3.8e-173 612.5 708 50.1
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 3.5e-171 605.9 635 51.7
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 6.1e-171 605.1 525 59.4
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 6.3e-168 595.1 402 71.9
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 1.4e-167 594.0 547 57.6
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 1.7e-165 587.0 386 73.8
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 1.4e-164 583.9 620 51.5
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 1.8e-162 577.0 557 55.1
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 2.3e-162 576.6 557 55.5
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 3.9e-162 575.9 530 54.5
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 1.2e-158 564.3 635 49.0
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 2.2e-157 560.1 391 70.3
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 2.2e-157 560.1 391 70.3
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 6.5e-157 558.5 386 70.5
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 8.8e-154 548.1 533 53.7
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 4.8e-152 542.3 387 68.2
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 2.4e-151 540.0 532 53.6
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 5.0e-149 532.3 387 66.7
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 8.5e-149 531.6 458 59.8
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.5e-148 530.0 533 54.6
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.3e-146 523.5 521 55.7
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 7.7e-142 508.4 612 48.5
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 1.5e-140 504.2 491 55.2
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 1.2e-139 501.1 578 46.7
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 5.7e-137 492.3 395 61.8
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.4e-130 471.1 490 53.5
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 4.9e-128 462.6 452 56.0
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 2.9e-125 453.4 393 59.0
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 1.9e-124 450.7 487 51.7
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 5.7e-121 439.1 489 47.6
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 1.6e-118 431.0 459 48.1
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 2.9e-117 426.8 359 60.4
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 8.0e-115 418.7 518 44.4
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.2e-113 414.8 362 55.8
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 4.1e-111 406.4 512 42.8
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 4.6e-110 402.9 264 75.0
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 3.5e-102 376.7 257 72.8
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 1.1e-92 345.1 322 54.3
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 8.4e-88 328.9 583 35.0
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.9e-87 327.8 512 40.0
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.2e-86 325.1 258 60.5
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 2.1e-86 324.3 350 51.1
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.5e-81 308.1 389 44.7
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 6.2e-75 286.2 199 66.8
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 6.9e-66 256.1 467 34.9
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 2.8e-59 234.2 159 72.3
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 5.7e-52 209.9 195 51.8
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 3.2e-47 194.1 132 71.2
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 9.4e-47 192.6 250 46.0
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 4.7e-38 163.7 249 40.2
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 3.9e-37 160.6 124 58.9
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 1.1e-36 159.1 231 42.9
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.5e-36 158.7 124 58.9
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 2.8e-35 154.5 121 59.5
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 1.7e-32 145.2 141 55.3
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 1.4e-29 135.6 155 47.1
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 1.6e-25 122.1 234 34.2
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 1.2e-20 105.9 87 60.9
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 2.1e-14 85.1 135 43.0
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 2.2e-11 75.1 192 32.3
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 4.5e-09 67.4 63 52.4
Hund21883 Selenicereus undatus HOM05D005279 ORTHO05D037448 4.3e-07 60.8 68 50.0
Hund30008 Selenicereus undatus HOM05D005279 ORTHO05D037448 4.3e-07 60.8 68 50.0
QL01p050333 Quercus lobata HOM05D005279 ORTHO05D037448 7.3e-07 60.1 52 51.9


User provided reference genes

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