Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01341 Eucalyptus grandis HOM05D008255 ORTHO05D003284 5.9e-52 207.2 103 100.0
Eucgr.H01343 Eucalyptus grandis HOM05D004004 ORTHO05D003284 9.6e-18 93.6 67 65.7
CANSAT80G0904 Cannabis sativa HOM05D004004 ORTHO05D003284 3.5e-12 75.1 68 55.9
Oeu000178.1 Olea europaea HOM05D004004 ORTHO05D003284 4.6e-12 74.7 68 51.5
FvH4_2g14710 Fragaria vesca HOM05D004004 ORTHO05D003284 6.0e-12 74.3 68 58.8
FAN15G2223 Fragaria x ananassa HOM05D004004 ORTHO05D003284 6.0e-12 74.3 68 58.8
FAN24G1883 Fragaria x ananassa HOM05D004004 ORTHO05D003284 6.0e-12 74.3 68 58.8
MBI18_g28922_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 7.8e-12 73.9 68 60.3
CDE06G0974 Ceratophyllum demersum HOM05D004004 ORTHO05D003284 1.0e-11 73.6 69 58.0
PGR031G3823 Punica granatum HOM05D004004 ORTHO05D003284 1.3e-11 73.2 69 56.5
GSVIVG01036224001 Vitis vinifera HOM05D004004 ORTHO05D003284 1.3e-11 73.2 68 55.9
CDE06G2437 Ceratophyllum demersum HOM05D004004 ORTHO05D003284 3.0e-11 72.0 69 56.5
CDE06G0543 Ceratophyllum demersum HOM05D004004 ORTHO05D003284 3.9e-11 71.6 69 55.1
TWI12G0300 Tripterygium wilfordii HOM05D000607 ORTHO05D003284 8.7e-11 70.5 68 58.8
Actinidia38530 Actinidia chinensis HOM05D004004 ORTHO05D003284 1.1e-10 70.1 65 56.9
HanXRQChr09g0250531 Helianthus annuus HOM05D004004 ORTHO05D003284 1.1e-10 70.1 59 52.5
MBI18_g28925_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 1.5e-10 69.7 67 59.7
Actinidia22847 Actinidia chinensis HOM05D004004 ORTHO05D003284 1.9e-10 69.3 70 52.9
CDE08G1315 Ceratophyllum demersum HOM05D004004 ORTHO05D003284 1.9e-10 69.3 69 53.6
Prupe.8G018500 Prunus persica HOM05D004004 ORTHO05D003284 2.5e-10 68.9 68 55.9
CSS0023371 Camellia sinensis var. sinensis HOM05D004004 ORTHO05D003284 4.3e-10 68.2 59 55.9
Dinv42931 Davidia involucrata HOM05D004004 ORTHO05D003284 4.3e-10 68.2 68 54.4
Dinv43169 Davidia involucrata HOM05D004004 ORTHO05D003284 4.3e-10 68.2 68 54.4
FvH4_2g14740 Fragaria vesca HOM05D004004 ORTHO05D003284 4.3e-10 68.2 68 57.4
Dinv42932 Davidia involucrata HOM05D004004 ORTHO05D003284 7.3e-10 67.4 68 54.4
Dinv43168 Davidia involucrata HOM05D004004 ORTHO05D003284 7.3e-10 67.4 68 54.4
Atru.chr12.1510 Acer truncatum HOM05D004004 ORTHO05D003284 9.6e-10 67.0 59 57.6
TAR633G0312 Trochodendron aralioides HOM05D004004 ORTHO05D003284 9.6e-10 67.0 68 51.5
PGR119G0576 Punica granatum HOM05D004004 ORTHO05D003284 1.6e-09 66.2 57 54.4
Potri.018G148900 Populus trichocarpa HOM05D004004 ORTHO05D003284 2.1e-09 65.9 57 57.9
QL03p011303 Quercus lobata HOM05D004004 ORTHO05D003284 2.1e-09 65.9 70 52.9
Actinidia01655 Actinidia chinensis HOM05D004004 ORTHO05D003284 3.6e-09 65.1 68 51.5
CARHR186920 Cardamine hirsuta HOM05D008255 ORTHO05D003284 3.6e-09 65.1 58 53.4
Manes.13G076069 Manihot esculenta HOM05D004004 ORTHO05D003284 3.6e-09 65.1 60 56.7
Lsat_1_v5_gn_9_81441 Lactuca sativa HOM05D000607 ORTHO05D003284 8.1e-09 63.9 60 48.3
Migut.N00981 Erythranthe guttata HOM05D004004 ORTHO05D003284 1.1e-08 63.5 68 48.5
A06p36870 Brassica napus HOM05D008255 ORTHO05D003284 1.4e-08 63.2 57 49.1
HanXRQChr16g0528781 Helianthus annuus HOM05D008255 ORTHO05D003284 1.4e-08 63.2 60 50.0
BcaB07g29967 Brassica carinata HOM05D008255 ORTHO05D003284 1.8e-08 62.8 57 47.4
C07p41630 Brassica napus HOM05D008255 ORTHO05D011943 1.8e-08 62.8 59 45.8
AUR62022233 Chenopodium quinoa HOM05D004004 ORTHO05D003284 1.8e-08 62.8 77 45.5
AUR62031945 Chenopodium quinoa HOM05D004004 ORTHO05D003284 2.4e-08 62.4 77 44.2
AUR62033201 Chenopodium quinoa HOM05D004004 ORTHO05D003284 2.4e-08 62.4 68 52.9
AL6G38500 Arabidopsis lyrata HOM05D008255 ORTHO05D003284 3.1e-08 62.0 57 54.4
EL10As8g23910 Beta vulgaris HOM05D004004 ORTHO05D003284 4.0e-08 61.6 59 44.1
BcaNung07316 Brassica carinata HOM05D008255 ORTHO05D003284 4.0e-08 61.6 56 48.2
BolC7t44697H Brassica oleracea HOM05D008255 ORTHO05D003284 4.0e-08 61.6 57 47.4
BraA06t26610Z Brassica rapa HOM05D008255 ORTHO05D011943 4.0e-08 61.6 56 48.2
Thhalv10021753m.g Eutrema salsugineum HOM05D008255 ORTHO05D003284 4.0e-08 61.6 57 49.1
Medtr5g020960 Medicago truncatula HOM05D004004 ORTHO05D003284 4.0e-08 61.6 70 50.0
BcaC03g17875 Brassica carinata HOM05D008255 ORTHO05D003284 5.3e-08 61.2 57 45.6
MBI16_g26156_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 6.9e-08 60.8 59 50.8
Potri.006G079400 Populus trichocarpa HOM05D004004 ORTHO05D003284 6.9e-08 60.8 68 48.5
TPR.G2394 Trifolium pratense HOM05D004004 ORTHO05D003284 6.9e-08 60.8 70 50.0
Hund14275 Selenicereus undatus HOM05D000607 ORTHO05D000518 9.0e-08 60.5 57 47.4
Ah.12g051880 Amaranthus hybridus HOM05D000607 ORTHO05D000518 1.2e-07 60.1 58 43.1
HanXRQChr02g0031231 Helianthus annuus HOM05D000607 ORTHO05D003284 1.2e-07 60.1 60 48.3
Nn1g09210 Nelumbo nucifera HOM05D004004 ORTHO05D003284 1.2e-07 60.1 68 42.6
A02p39410 Brassica napus HOM05D008255 ORTHO05D003284 1.5e-07 59.7 57 43.9
Rhsim06G0029400 Rhododendron simsii HOM05D004004 ORTHO05D003284 1.5e-07 59.7 59 44.1
EL10Ac5g12831 Beta vulgaris HOM05D000607 ORTHO05D000518 2.0e-07 59.3 58 46.6
HanXRQChr09g0250491 Helianthus annuus HOM05D000607 ORTHO05D003284 2.0e-07 59.3 59 45.8
Lj2g0016762 Lotus japonicus HOM05D004004 ORTHO05D003284 2.0e-07 59.3 70 47.1
MBI10_g00769_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 2.0e-07 59.3 70 45.7
Hund05396 Selenicereus undatus HOM05D004004 ORTHO05D003284 2.0e-07 59.3 57 50.9
TWI53G0327 Tripterygium wilfordii HOM05D004004 ORTHO05D003284 2.0e-07 59.3 59 47.5
Zm00001eb127390 Zea mays HOM05D008255 ORTHO05D003284 2.0e-07 59.3 61 52.5
Eucgr.I02406 Eucalyptus grandis HOM05D004004 ORTHO05D003284 2.6e-07 58.9 70 44.3
Nn1g04908 Nelumbo nucifera HOM05D000607 ORTHO05D003284 2.6e-07 58.9 59 45.8
CiPaw.08G139700 Carya illinoinensis HOM05D004004 ORTHO05D003284 3.4e-07 58.5 70 44.3
AUR62015036 Chenopodium quinoa HOM05D004004 ORTHO05D003284 3.4e-07 58.5 59 42.4
AT5G26690 Arabidopsis thaliana HOM05D008255 ORTHO05D003284 4.5e-07 58.2 57 50.9
BolC2t11969H Brassica oleracea HOM05D008255 ORTHO05D003284 4.5e-07 58.2 53 45.3
BraA02t08910Z Brassica rapa HOM05D008255 ORTHO05D003284 4.5e-07 58.2 53 45.3
Sp3g04810 Schrenkiella parvula HOM05D008255 ORTHO05D003284 4.5e-07 58.2 57 45.6
THA.LOC104820102 Tarenaya hassleriana HOM05D008255 ORTHO05D003284 4.5e-07 58.2 58 43.1
VMungo1215G3070 Vigna mungo HOM05D004004 ORTHO05D003284 4.5e-07 58.2 70 44.3
EL10As5g23553 Beta vulgaris HOM05D004028 ORTHO05D004844 5.8e-07 57.8 77 41.6
Carub.0006s2427 Capsella rubella HOM05D008255 ORTHO05D003284 5.8e-07 57.8 57 47.4
HanXRQChr09g0250511 Helianthus annuus HOM05D004004 ORTHO05D003284 5.8e-07 57.8 60 45.0
Lsat_1_v5_gn_9_81421 Lactuca sativa HOM05D000607 ORTHO05D003284 5.8e-07 57.8 44 54.5
TAR381G0545 Trochodendron aralioides HOM05D000607 ORTHO05D003284 5.8e-07 57.8 59 42.4
GSVIVG01028844001 Vitis vinifera HOM05D000607 ORTHO05D000518 5.8e-07 57.8 59 44.1
Actinidia22522 Actinidia chinensis HOM05D004004 ORTHO05D003284 7.6e-07 57.4 63 41.3
BcaC09g47861 Brassica carinata HOM05D008255 ORTHO05D003284 7.6e-07 57.4 57 45.6
A05p42140 Brassica napus HOM05D008255 ORTHO05D003284 7.6e-07 57.4 57 45.6
C05p61350 Brassica napus HOM05D008255 ORTHO05D003284 7.6e-07 57.4 57 45.6
Aqoxy6G01169 Aquilegia oxysepala HOM05D004004 ORTHO05D003284 9.9e-07 57.0 59 45.8
CANSAT25G0030 Cannabis sativa HOM05D004004 ORTHO05D003284 9.9e-07 57.0 59 40.7
CAN.G358.44 Capsicum annuum HOM05D004004 ORTHO05D003284 9.9e-07 57.0 70 45.7
CDE11G0543 Ceratophyllum demersum HOM05D000607 ORTHO05D000518 9.9e-07 57.0 57 47.4
Dinv40018 Davidia involucrata HOM05D004004 ORTHO05D003284 9.9e-07 57.0 70 44.3
ECA238G0774 Erigeron canadensis HOM05D004004 ORTHO05D003284 9.9e-07 57.0 63 49.2
Lsat_1_v5_gn_6_4461 Lactuca sativa HOM05D000607 ORTHO05D000518 9.9e-07 57.0 58 44.8
Os04g0661100 Oryza sativa ssp. japonica HOM05D004004 ORTHO05D003284 9.9e-07 57.0 59 45.8
Phvul.002G033800 Phaseolus vulgaris HOM05D004004 ORTHO05D003284 9.9e-07 57.0 70 44.3
TWI12G0953 Tripterygium wilfordii HOM05D004004 ORTHO05D003284 9.9e-07 57.0 53 56.6
HanXRQChr02g0049341 Helianthus annuus HOM05D000607 ORTHO05D000518 1.3e-06 56.6 57 47.4
HanXRQChr14g0440601 Helianthus annuus HOM05D004004 ORTHO05D003284 1.3e-06 56.6 63 46.0
Lsat_1_v5_gn_2_77660 Lactuca sativa HOM05D004004 ORTHO05D003284 1.3e-06 56.6 59 45.8
Nn3g19201 Nelumbo nucifera HOM05D008255 ORTHO05D003284 1.3e-06 56.6 53 56.6
Potri.017G147500 Populus trichocarpa HOM05D000607 ORTHO05D000518 1.3e-06 56.6 59 44.1
Hund13999 Selenicereus undatus HOM05D004004 ORTHO05D003284 1.3e-06 56.6 59 44.1
SGA_v2.0_scaffold173G39143 Striga asiatica HOM05D000607 ORTHO05D000518 1.3e-06 56.6 57 47.4
Aa31LG5G16330 Aethionema arabicum HOM05D008255 ORTHO05D003284 1.7e-06 56.2 57 43.9
Thhalv10005163m.g Eutrema salsugineum HOM05D008255 ORTHO05D003284 1.7e-06 56.2 57 45.6
FAN03G2793 Fragaria x ananassa HOM05D000607 ORTHO05D000518 1.7e-06 56.2 59 42.4
Nitab4.5_0005980g0010 Nicotiana tabacum HOM05D004004 ORTHO05D003284 1.7e-06 56.2 70 45.7
Rhsim05G0125300 Rhododendron simsii HOM05D004004 ORTHO05D003284 1.7e-06 56.2 69 44.9
Sp2g21330 Schrenkiella parvula HOM05D008255 ORTHO05D003284 1.7e-06 56.2 57 43.9
TAR381G1189 Trochodendron aralioides HOM05D004004 ORTHO05D003284 1.7e-06 56.2 70 44.3
BolC1t05653H Brassica oleracea HOM05D008255 ORTHO05D003284 2.2e-06 55.8 57 43.9
BraA01t04464Z Brassica rapa HOM05D008255 ORTHO05D003284 2.2e-06 55.8 57 43.9
CiPaw.07G049200 Carya illinoinensis HOM05D004004 ORTHO05D003284 2.2e-06 55.8 59 44.1
ECA236G0870 Erigeron canadensis HOM05D000607 ORTHO05D003284 2.2e-06 55.8 46 54.3
FAN03G2538 Fragaria x ananassa HOM05D000607 ORTHO05D000518 2.2e-06 55.8 59 40.7
FAN27G0008 Fragaria x ananassa HOM05D004004 ORTHO05D003284 2.2e-06 55.8 56 53.6
Hma1.2p1_0775F.1_g216490 Hydrangea macrophylla HOM05D004004 ORTHO05D003284 2.2e-06 55.8 57 43.9
Lsat_1_v5_gn_9_82560 Lactuca sativa HOM05D000607 ORTHO05D003284 2.2e-06 55.8 44 54.5
Potri.017G147400 Populus trichocarpa HOM05D000607 ORTHO05D000518 2.2e-06 55.8 60 43.3
Prupe.1G375500 Prunus persica HOM05D004004 ORTHO05D003284 2.2e-06 55.8 59 45.8
CSS0046435 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 2.9e-06 55.5 58 44.8
CiPaw.08G059800 Carya illinoinensis HOM05D004004 ORTHO05D003284 2.9e-06 55.5 58 43.1
Ciclev10022806m.g Citrus clementina HOM05D000607 ORTHO05D000518 2.9e-06 55.5 58 44.8
vmacro21674 Vaccinium macrocarpon HOM05D003425 ORTHO05D003897 2.9e-06 55.5 56 42.9
GSVIVG01028851001 Vitis vinifera HOM05D000607 ORTHO05D000518 2.9e-06 55.5 59 42.4
Actinidia19203 Actinidia chinensis HOM05D004004 ORTHO05D003284 3.8e-06 55.1 70 42.9
Ciclev10006198m.g Citrus clementina HOM05D000607 ORTHO05D000518 3.8e-06 55.1 59 42.4
Cc08_g15210 Coffea canephora HOM05D000607 ORTHO05D000518 3.8e-06 55.1 57 45.6
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 3.8e-06 55.1 59 40.7
MELO3C016341.2 Cucumis melo HOM05D000607 ORTHO05D000518 3.8e-06 55.1 59 47.5
ECA236G3928 Erigeron canadensis HOM05D008255 ORTHO05D003284 3.8e-06 55.1 48 52.1
Glyma.11G071500 Glycine max HOM05D004004 ORTHO05D003284 3.8e-06 55.1 70 42.9
HanXRQChr13g0393911 Helianthus annuus HOM05D000607 ORTHO05D000518 3.8e-06 55.1 58 44.8
Manes.02G017600 Manihot esculenta HOM05D000607 ORTHO05D000518 3.8e-06 55.1 57 43.9
PSO782G5718 Papaver somniferum HOM05D000607 ORTHO05D000518 3.8e-06 55.1 67 43.3
Psat2g157520 Pisum sativum HOM05D004004 ORTHO05D003284 3.8e-06 55.1 59 49.2
SalBow5G1136 Salvia bowleyana HOM05D004004 ORTHO05D003284 3.8e-06 55.1 70 41.4
PGSC0003DMG400021650 Solanum tuberosum HOM05D000607 ORTHO05D000518 3.8e-06 55.1 57 49.1
THA.LOC104818765 Tarenaya hassleriana HOM05D008255 ORTHO05D003284 3.8e-06 55.1 57 43.9
AL3G16680 Arabidopsis lyrata HOM05D008255 ORTHO05D003284 4.9e-06 54.7 57 43.9
AT3G05920 Arabidopsis thaliana HOM05D008255 ORTHO05D003284 4.9e-06 54.7 57 43.9
Carub.0003s0529 Capsella rubella HOM05D008255 ORTHO05D003284 4.9e-06 54.7 57 42.1
CARHR080380 Cardamine hirsuta HOM05D008255 ORTHO05D003284 4.9e-06 54.7 57 42.1
Cpa.g.sc6.165 Carica papaya HOM05D004004 ORTHO05D003284 4.9e-06 54.7 59 42.4
Cfa006895 Carpinus fangiana HOM05D004004 ORTHO05D003284 4.9e-06 54.7 70 42.9
AUR62010745 Chenopodium quinoa HOM05D000607 ORTHO05D000518 4.9e-06 54.7 57 43.9
ECA238G4041 Erigeron canadensis HOM05D004004 ORTHO05D003284 4.9e-06 54.7 59 42.4
Nitab4.5_0003001g0020 Nicotiana tabacum HOM05D004004 ORTHO05D003284 4.9e-06 54.7 59 47.5
Oeu025680.1 Olea europaea HOM05D004004 ORTHO05D003284 4.9e-06 54.7 57 43.9
PGR042G0687 Punica granatum HOM05D000607 ORTHO05D000518 4.9e-06 54.7 68 39.7
CSS0048498 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 6.4e-06 54.3 59 45.8
CiPaw.11G130200 Carya illinoinensis HOM05D000607 ORTHO05D000518 6.4e-06 54.3 57 43.9
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 6.4e-06 54.3 67 43.3
FAN23G2735 Fragaria x ananassa HOM05D004004 ORTHO05D003284 6.4e-06 54.3 67 43.3
PSO478G5073 Papaver somniferum HOM05D000607 ORTHO05D000518 6.4e-06 54.3 59 44.1
Potri.005G120200 Populus trichocarpa HOM05D004004 ORTHO05D003284 6.4e-06 54.3 59 44.1
SEGI_28010 Sequoiadendron giganteum HOM05D004004 ORTHO05D003284 6.4e-06 54.3 55 43.6
SGA_v2.0_scaffold144G35904 Striga asiatica HOM05D000607 ORTHO05D000518 6.4e-06 54.3 59 49.2
Zm00001eb021790 Zea mays HOM05D000607 ORTHO05D000518 6.4e-06 54.3 59 45.8
FAN26G1971 Fragaria x ananassa HOM05D008813 ORTHO05D003284 8.4e-06 53.9 72 38.9
FAN28G2460 Fragaria x ananassa HOM05D004004 ORTHO05D003284 8.4e-06 53.9 67 43.3
MD02G1143000 Malus domestica HOM05D004004 ORTHO05D003284 8.4e-06 53.9 61 39.3
Os01g0249800 Oryza sativa ssp. japonica HOM05D004004 ORTHO05D003284 8.4e-06 53.9 59 49.2
PSO782G2562 Papaver somniferum HOM05D000607 ORTHO05D000518 8.4e-06 53.9 59 44.1
Phvul.002G292900 Phaseolus vulgaris HOM05D000607 ORTHO05D000518 8.4e-06 53.9 57 43.9
SEGI_40269 Sequoiadendron giganteum HOM05D004004 ORTHO05D003284 8.4e-06 53.9 59 45.8
Sopen02g029610 Solanum pennellii HOM05D004004 ORTHO05D003284 8.4e-06 53.9 70 44.3
Thecc.03G185200 Theobroma cacao HOM05D000607 ORTHO05D000518 8.4e-06 53.9 59 40.7
VMungo0647G0080 Vigna mungo HOM05D003425 ORTHO05D003897 8.4e-06 53.9 56 42.9


User provided reference genes

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