Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01323 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.3e-33 146.0 81 100.0
Eucgr.L03552 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.5e-21 105.9 79 65.8
Eucgr.H01321 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.9e-21 105.5 76 68.4
Eucgr.H01327 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.9e-21 105.5 78 69.2
Eucgr.H01329 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.9e-21 105.5 78 69.2
Eucgr.H01326 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.6e-21 104.0 78 67.9
Eucgr.H01330 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.6e-20 102.4 78 67.9
Eucgr.H01325 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.8e-20 101.7 78 66.7
Eucgr.H01328 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.6e-20 101.3 78 66.7
Eucgr.H01332 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.8e-19 99.0 78 66.7
Eucgr.H01333 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.3e-19 98.6 78 62.8
Eucgr.H01331 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.2e-18 96.3 78 61.5
Eucgr.H01324 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.5e-18 95.9 77 62.3
Eucgr.H01334 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.4e-16 89.4 78 62.8
PGR083G0845 Punica granatum HOM05D002165 ORTHO05D001531 1.0e-14 83.2 77 53.2
Atru.chr12.1534 Acer truncatum HOM05D002165 ORTHO05D001531 2.8e-12 75.1 63 61.9
Atru.chr12.1536 Acer truncatum HOM05D002165 ORTHO05D001531 2.8e-12 75.1 63 61.9
Prupe.6G304300 Prunus persica HOM05D002165 ORTHO05D001531 1.4e-11 72.8 78 50.0
Ciclev10013222m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.8e-11 72.4 63 60.3
Eucgr.H01322 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.8e-11 72.4 78 50.0
Eucgr.L03553 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.8e-11 72.4 78 50.0
FAN05G4164 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.8e-11 72.4 77 48.1
THA.LOC104818754 Tarenaya hassleriana HOM05D002165 ORTHO05D001531 3.1e-11 71.6 77 53.2
FAN02G1676 Fragaria x ananassa HOM05D002165 ORTHO05D001531 4.0e-11 71.2 77 46.8
FAN09G0584 Fragaria x ananassa HOM05D002165 ORTHO05D001531 4.0e-11 71.2 77 46.8
Cpa.g.sc48.225 Carica papaya HOM05D002165 ORTHO05D001531 6.8e-11 70.5 63 58.7
TAR633G1086 Trochodendron aralioides HOM05D002165 ORTHO05D001531 6.8e-11 70.5 77 50.6
Ciclev10013220m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.2e-10 69.7 63 58.7
FvH4_6g08530 Fragaria vesca HOM05D002165 ORTHO05D001531 1.2e-10 69.7 77 46.8
FAN14G5435 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.2e-10 69.7 77 46.8
TAR362G0276 Trochodendron aralioides HOM05D002165 ORTHO05D001531 1.2e-10 69.7 77 48.1
Rhsim11G0104900 Rhododendron simsii HOM05D002165 ORTHO05D001531 3.4e-10 68.2 82 47.6
Cc02_g35880 Coffea canephora HOM05D002165 ORTHO05D001531 4.4e-10 67.8 52 61.5
RcHm_v2.0_Chr1g0321401 Rosa chinensis HOM05D002165 ORTHO05D001531 9.9e-10 66.6 77 44.2
Prupe.6G304200 Prunus persica HOM05D002165 ORTHO05D001531 1.3e-09 66.2 75 49.3
Aqoxy5G02840 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 2.2e-09 65.5 62 53.2
Carub.0006s2437 Capsella rubella HOM05D002165 ORTHO05D001531 2.2e-09 65.5 64 57.8
CARHR186860 Cardamine hirsuta HOM05D002165 ORTHO05D001531 2.2e-09 65.5 81 49.4
CSS0004014 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 2.9e-09 65.1 74 43.2
CARHR080310 Cardamine hirsuta HOM05D002165 ORTHO05D001531 2.9e-09 65.1 79 51.9
Ciclev10013801m.g Citrus clementina HOM05D002165 ORTHO05D001531 2.9e-09 65.1 63 57.1
BraA02t08873Z Brassica rapa HOM05D002165 ORTHO05D001531 4.9e-09 64.3 80 50.0
Actinidia17737 Actinidia chinensis HOM05D002165 ORTHO05D001531 6.4e-09 63.9 71 46.5
AL6G38560 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 6.4e-09 63.9 64 56.2
BcaC03g17834 Brassica carinata HOM05D002165 ORTHO05D001531 6.4e-09 63.9 80 50.0
BcaNung06223 Brassica carinata HOM05D002165 ORTHO05D001531 6.4e-09 63.9 80 50.0
A02p39040 Brassica napus HOM05D002165 ORTHO05D001531 6.4e-09 63.9 80 50.0
C02p58650 Brassica napus HOM05D002165 ORTHO05D001531 6.4e-09 63.9 80 50.0
BolC2t11925H Brassica oleracea HOM05D002165 ORTHO05D001531 6.4e-09 63.9 80 50.0
MD04G1186400 Malus domestica HOM05D002165 ORTHO05D001531 6.4e-09 63.9 63 49.2
BcaB07g29941 Brassica carinata HOM05D002165 ORTHO05D001531 8.3e-09 63.5 63 57.1
BcaNung03681 Brassica carinata HOM05D002165 ORTHO05D001531 8.3e-09 63.5 80 50.0
A01p30200 Brassica napus HOM05D002165 ORTHO05D001531 8.3e-09 63.5 62 59.7
C07p41550 Brassica napus HOM05D002165 ORTHO05D001531 8.3e-09 63.5 80 50.0
BolC7t44687H Brassica oleracea HOM05D002165 ORTHO05D001531 8.3e-09 63.5 80 50.0
BcaC01g04301 Brassica carinata HOM05D002165 ORTHO05D001531 1.1e-08 63.2 62 58.1
BcaC09g47857 Brassica carinata HOM05D002165 ORTHO05D001531 1.1e-08 63.2 62 58.1
C03p41790 Brassica napus HOM05D002165 ORTHO05D001531 1.1e-08 63.2 62 58.1
BolC1t05659H Brassica oleracea HOM05D002165 ORTHO05D001531 1.1e-08 63.2 62 58.1
BolC3t16462H Brassica oleracea HOM05D002165 ORTHO05D001531 1.1e-08 63.2 62 58.1
BraA01t04469Z Brassica rapa HOM05D002165 ORTHO05D001531 1.1e-08 63.2 62 58.1
Aqoxy2G02476 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 1.4e-08 62.8 78 46.2
BcaNung03907 Brassica carinata HOM05D002165 ORTHO05D001531 1.4e-08 62.8 63 57.1
A06p36950 Brassica napus HOM05D002165 ORTHO05D001531 1.4e-08 62.8 63 57.1
BraA06t26620Z Brassica rapa HOM05D002165 ORTHO05D001531 1.4e-08 62.8 63 57.1
Migut.N00975 Erythranthe guttata HOM05D002165 ORTHO05D001531 1.4e-08 62.8 74 50.0
Thhalv10005460m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 1.4e-08 62.8 81 48.1
MELO3C004151.2 Cucumis melo HOM05D002165 ORTHO05D001531 1.9e-08 62.4 73 49.3
TWI12G1307 Tripterygium wilfordii HOM05D002165 ORTHO05D001531 1.9e-08 62.4 72 50.0
BcaB04g19717 Brassica carinata HOM05D002165 ORTHO05D001531 2.4e-08 62.0 80 48.8
Aa31LG11G9930 Aethionema arabicum HOM05D002165 ORTHO05D001531 3.2e-08 61.6 65 50.8
BcaB04g19240 Brassica carinata HOM05D002165 ORTHO05D001531 3.2e-08 61.6 62 58.1
A03p34320 Brassica napus HOM05D002165 ORTHO05D001531 3.2e-08 61.6 62 58.1
BraA03t12608Z Brassica rapa HOM05D002165 ORTHO05D001531 3.2e-08 61.6 62 58.1
BcaC05g29776 Brassica carinata HOM05D002165 ORTHO05D001531 4.1e-08 61.2 63 57.1
Oeu062787.1 Olea europaea HOM05D002165 ORTHO05D001531 4.1e-08 61.2 69 44.9
Sed0026735 Sechium edule HOM05D002165 ORTHO05D001531 4.1e-08 61.2 67 47.8
Thecc.09G084900 Theobroma cacao HOM05D002165 ORTHO05D001531 5.4e-08 60.8 64 53.1
GSVIVG01017704001 Vitis vinifera HOM05D002165 ORTHO05D001531 5.4e-08 60.8 78 47.4
BcaC05g30083 Brassica carinata HOM05D002165 ORTHO05D001531 7.1e-08 60.5 63 57.1
A05p42200 Brassica napus HOM05D002165 ORTHO05D001531 7.1e-08 60.5 63 57.1
BraA05t22939Z Brassica rapa HOM05D002165 ORTHO05D001531 7.1e-08 60.5 63 57.1
CSS0044388 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 7.1e-08 60.5 60 46.7
Carub.0003s0521 Capsella rubella HOM05D002165 ORTHO05D001531 7.1e-08 60.5 62 56.5
Ciclev10013684m.g Citrus clementina HOM05D002165 ORTHO05D001531 7.1e-08 60.5 63 50.8
C05p61420 Brassica napus HOM05D002165 ORTHO05D001531 9.2e-08 60.1 63 57.1
BolC5t34800H Brassica oleracea HOM05D002165 ORTHO05D001531 9.2e-08 60.1 63 57.1
MELO3C025017.2 Cucumis melo HOM05D002165 ORTHO05D001531 9.2e-08 60.1 83 42.2
RcHm_v2.0_Chr3g0458591 Rosa chinensis HOM05D002165 ORTHO05D001531 9.2e-08 60.1 75 44.0
GSVIVG01017705001 Vitis vinifera HOM05D002165 ORTHO05D001531 9.2e-08 60.1 78 47.4
GSVIVG01017706001 Vitis vinifera HOM05D002165 ORTHO05D001531 9.2e-08 60.1 78 47.4
CSS0027376 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 1.2e-07 59.7 59 52.5
Thhalv10021847m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 1.2e-07 59.7 62 54.8
Glyma.10G143200 Glycine max HOM05D008018 ORTHO05D001531 1.2e-07 59.7 57 54.4
Nn3g21955 Nelumbo nucifera HOM05D002165 ORTHO05D001531 1.2e-07 59.7 63 50.8
Phvul.007G205400 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 1.2e-07 59.7 57 54.4
Phvul.007G205600 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 1.2e-07 59.7 57 54.4
Sc16g0009410 Simmondsia chinensis HOM05D002165 ORTHO05D001531 1.2e-07 59.7 79 43.0
Aa31LG5G16230 Aethionema arabicum HOM05D002165 ORTHO05D001531 1.6e-07 59.3 63 55.6
Ah.10g026790 Amaranthus hybridus HOM05D002165 ORTHO05D001531 1.6e-07 59.3 39 66.7
AT3G05858 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 1.6e-07 59.3 79 49.4
BcaC04g23632 Brassica carinata HOM05D002165 ORTHO05D001531 1.6e-07 59.3 62 54.8
A09p05720 Brassica napus HOM05D002165 ORTHO05D001531 1.6e-07 59.3 62 54.8
C09p06310 Brassica napus HOM05D002165 ORTHO05D001531 1.6e-07 59.3 62 54.8
BolC9t53551H Brassica oleracea HOM05D002165 ORTHO05D001531 1.6e-07 59.3 62 54.8
BraA09t36213Z Brassica rapa HOM05D002165 ORTHO05D001531 1.6e-07 59.3 62 54.8
AL3G16610 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 2.1e-07 58.9 79 49.4
Ciclev10010714m.g Citrus clementina HOM05D002165 ORTHO05D001531 2.1e-07 58.9 62 56.5
Migut.B00883 Erythranthe guttata HOM05D002165 ORTHO05D001531 2.1e-07 58.9 75 46.7
AUR62000479 Chenopodium quinoa HOM05D002165 ORTHO05D001531 2.7e-07 58.5 52 57.7
AUR62006822 Chenopodium quinoa HOM05D002165 ORTHO05D001531 2.7e-07 58.5 52 57.7
ClCG02G014640 Citrullus lanatus HOM05D002165 ORTHO05D001531 2.7e-07 58.5 73 45.2
CsaV3_6G002670 Cucumis sativus L. HOM05D002165 ORTHO05D001531 2.7e-07 58.5 83 42.2
Sed0005500 Sechium edule HOM05D002165 ORTHO05D001531 2.7e-07 58.5 63 47.6
DCAR_001884 Daucus carota HOM05D002165 ORTHO05D001531 3.5e-07 58.2 55 52.7
DCAR_001885 Daucus carota HOM05D002165 ORTHO05D001531 3.5e-07 58.2 73 46.6
DCAR_002291 Daucus carota HOM05D002165 ORTHO05D001531 3.5e-07 58.2 73 46.6
Oeu000103.1 Olea europaea HOM05D008018 ORTHO05D001531 3.5e-07 58.2 74 47.3
Sed0022046 Sechium edule HOM05D002165 ORTHO05D001531 3.5e-07 58.2 63 46.0
EL10Ac4g09564 Beta vulgaris HOM05D002165 ORTHO05D001531 4.6e-07 57.8 51 54.9
Nitab4.5_0005662g0010 Nicotiana tabacum HOM05D002165 ORTHO05D001531 4.6e-07 57.8 59 50.8
Sp3g04720 Schrenkiella parvula HOM05D002165 ORTHO05D001531 4.6e-07 57.8 62 56.5
CAN.G1248.15 Capsicum annuum HOM05D002165 ORTHO05D001531 6.0e-07 57.4 57 49.1
Oeu061905.1 Olea europaea HOM05D002165 ORTHO05D001531 6.0e-07 57.4 74 43.2
Sed0018337 Sechium edule HOM05D002165 ORTHO05D001531 6.0e-07 57.4 60 53.3
Dinv30951 Davidia involucrata HOM05D002165 ORTHO05D001531 7.8e-07 57.0 77 41.6
Lsat_1_v5_gn_9_85080 Lactuca sativa HOM05D002165 ORTHO05D001531 7.8e-07 57.0 53 49.1
Phvul.007G205300 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 7.8e-07 57.0 57 50.9
Rhsim05G0122900 Rhododendron simsii HOM05D002165 ORTHO05D001531 7.8e-07 57.0 53 52.8
VMungo0720G1916 Vigna mungo HOM05D008018 ORTHO05D001531 7.8e-07 57.0 57 50.9
Glyma.20G091600 Glycine max HOM05D008018 ORTHO05D001531 1.0e-06 56.6 57 50.9
Glyma.20G091800 Glycine max HOM05D008018 ORTHO05D001531 1.0e-06 56.6 57 50.9
Nitab4.5_0002516g0010 Nicotiana tabacum HOM05D002165 ORTHO05D001531 1.0e-06 56.6 59 50.8
Sed0002745 Sechium edule HOM05D002165 ORTHO05D001531 1.0e-06 56.6 76 43.4
AT5G26620 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 1.3e-06 56.2 45 62.2
ClCG00G002170 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.3e-06 56.2 83 41.0
ClCG08G002310 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.3e-06 56.2 83 41.0
ClCG08G002360 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.3e-06 56.2 83 41.0
MELO3C006762.2 Cucumis melo HOM05D002165 ORTHO05D001531 1.3e-06 56.2 35 71.4
MELO3C025020.2 Cucumis melo HOM05D002165 ORTHO05D001531 1.3e-06 56.2 84 42.9
CsaV3_3G015630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 1.3e-06 56.2 35 71.4
CsaV3_6G002640 Cucumis sativus L. HOM05D002165 ORTHO05D001531 1.3e-06 56.2 84 42.9
ECA236G1383 Erigeron canadensis HOM05D002165 ORTHO05D001531 1.3e-06 56.2 52 50.0
Manes.08G107400 Manihot esculenta HOM05D002165 ORTHO05D001531 1.3e-06 56.2 79 44.3
DCAR_001886 Daucus carota HOM05D002165 ORTHO05D001531 1.7e-06 55.8 73 46.6
Manes.03G213400 Manihot esculenta HOM05D002165 ORTHO05D001531 1.7e-06 55.8 77 41.6
Sabra13G0001400 Salix brachista HOM05D002165 ORTHO05D001531 1.7e-06 55.8 64 51.6
Sed0009609 Sechium edule HOM05D002165 ORTHO05D001531 1.7e-06 55.8 61 45.9
Solyc01g101260.2 Solanum lycopersicum HOM05D002165 ORTHO05D001531 1.7e-06 55.8 55 47.3
Sopen01g044710 Solanum pennellii HOM05D002165 ORTHO05D001531 1.7e-06 55.8 55 47.3
Ah.06g190740 Amaranthus hybridus HOM05D002165 ORTHO05D001531 2.3e-06 55.5 33 72.7
arahy.Tifrunner.gnm1.ann1.RMBA11 Arachis hypogaea HOM05D008018 ORTHO05D001531 2.3e-06 55.5 74 47.3
COL.COLO4_05484 Corchorus olitorius HOM05D002165 ORTHO05D001531 2.3e-06 55.5 68 51.5
Glyma.10G143000 Glycine max HOM05D008018 ORTHO05D001531 2.3e-06 55.5 73 45.2
Glyma.20G091700 Glycine max HOM05D008018 ORTHO05D001531 2.3e-06 55.5 57 50.9
Sabra13G0005300 Salix brachista HOM05D002165 ORTHO05D001531 2.3e-06 55.5 65 47.7
PSO761G0534 Papaver somniferum HOM05D002165 ORTHO05D001531 3.0e-06 55.1 82 39.0
QL03p011025 Quercus lobata HOM05D016210 ORTHO05D001531 3.0e-06 55.1 56 44.6
QL03p011084 Quercus lobata HOM05D016210 ORTHO05D001531 3.0e-06 55.1 56 44.6
TWI56G1053 Tripterygium wilfordii HOM05D002165 ORTHO05D001531 3.0e-06 55.1 35 71.4
Nn3g21957 Nelumbo nucifera HOM05D002165 ORTHO05D001531 3.9e-06 54.7 77 33.8
arahy.Tifrunner.gnm1.ann1.1WI4WZ Arachis hypogaea HOM05D008018 ORTHO05D001531 5.1e-06 54.3 74 45.9
Duzib128G1662 Durio zibethinus HOM05D002165 ORTHO05D001531 5.1e-06 54.3 65 52.3
Nitab4.5_0000800g0060 Nicotiana tabacum HOM05D002165 ORTHO05D001531 5.1e-06 54.3 57 47.4
Nitab4.5_0003573g0030 Nicotiana tabacum HOM05D002165 ORTHO05D001531 5.1e-06 54.3 57 47.4
Nitab4.5_0003573g0040 Nicotiana tabacum HOM05D002165 ORTHO05D001531 5.1e-06 54.3 57 47.4
Prupe.4G278700 Prunus persica HOM05D002165 ORTHO05D001531 5.1e-06 54.3 82 42.7
Glyma.10G143100 Glycine max HOM05D008018 ORTHO05D001531 6.6e-06 53.9 73 43.8
Lsat_1_v5_gn_9_85041 Lactuca sativa HOM05D002165 ORTHO05D001531 6.6e-06 53.9 53 47.2
Sed0016802 Sechium edule HOM05D002165 ORTHO05D001531 6.6e-06 53.9 83 38.6
GSVIVG01017707001 Vitis vinifera HOM05D002165 ORTHO05D001531 6.6e-06 53.9 78 43.6
Lalb_Chr13g0299051 Lupinus albus HOM05D002165 ORTHO05D001531 8.6e-06 53.5 56 50.0
Sabra13G0001300 Salix brachista HOM05D002165 ORTHO05D001531 8.6e-06 53.5 64 50.0


User provided reference genes

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