Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 0.0e+00 1199.5 641 100.0
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 2.0e-161 573.5 639 49.1
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 7.0e-159 565.1 642 49.8
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 1.6e-158 563.9 643 49.5
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 2.2e-157 560.1 636 50.2
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 1.1e-156 557.8 649 48.8
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 1.6e-155 553.9 602 50.3
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 4.4e-153 545.8 664 47.6
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 9.8e-153 544.7 632 49.5
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 3.7e-152 542.7 647 47.0
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.1e-151 541.2 645 47.6
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 1.1e-148 531.2 611 48.0
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 9.5e-148 528.1 583 52.1
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 8.0e-147 525.0 646 47.1
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 8.0e-147 525.0 600 49.7
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 1.4e-146 524.2 600 47.3
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.2e-146 522.3 651 47.2
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 1.2e-145 521.2 651 47.2
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 1.3e-144 517.7 646 47.2
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.7e-144 516.2 652 46.9
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 7.0e-143 511.9 598 48.5
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 1.7e-141 507.3 633 48.2
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.9e-140 503.8 629 46.3
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 2.5e-140 503.4 602 46.7
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 7.3e-140 501.9 639 47.6
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 7.3e-140 501.9 589 49.2
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 7.3e-140 501.9 652 46.5
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.6e-139 500.7 639 47.4
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.8e-139 500.0 633 47.1
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 1.2e-137 494.6 640 46.2
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 1.3e-136 491.1 644 45.8
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 8.3e-136 488.4 604 47.4
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 8.3e-136 488.4 609 45.8
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.1e-135 486.1 633 45.8
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 6.0e-134 482.3 640 44.5
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.3e-133 480.3 653 44.9
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.0e-133 479.9 648 45.5
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.9e-133 479.6 653 44.7
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 1.2e-131 474.6 644 42.2
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 2.8e-131 473.4 634 44.5
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 6.2e-131 472.2 638 42.9
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 8.0e-131 471.9 605 44.5
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.1e-130 471.5 638 44.5
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 2.3e-130 470.3 610 45.2
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 4.0e-130 469.5 651 44.4
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 1.2e-129 468.0 597 46.4
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 3.4e-129 466.5 613 45.4
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 1.1e-127 461.5 606 43.9
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 3.2e-127 459.9 608 43.4
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 7.0e-127 458.8 608 43.3
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 2.1e-126 457.2 611 42.4
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.0e-125 454.9 602 43.5
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 1.3e-125 454.5 656 43.3
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 3.0e-125 453.4 635 42.4
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 3.0e-125 453.4 612 45.3
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 6.6e-125 452.2 594 42.4
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 3.3e-124 449.9 600 43.0
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 2.1e-123 447.2 604 44.2
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 2.8e-123 446.8 647 43.3
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 6.2e-123 445.7 655 44.4
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 6.8e-122 442.2 607 44.0
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 3.4e-121 439.9 606 42.7
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 4.4e-121 439.5 657 43.1
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 7.5e-121 438.7 603 43.0
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 1.4e-119 434.5 608 42.8
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 3.2e-119 433.3 599 42.1
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 3.2e-119 433.3 559 47.2
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.2e-118 431.4 604 42.2
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 1.6e-118 431.0 601 41.8
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 2.3e-117 427.2 580 42.9
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 3.3e-116 423.3 604 42.1
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.4e-114 417.2 604 42.1
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 4.4e-113 412.9 604 42.1
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 5.8e-113 412.5 610 40.5
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 7.6e-113 412.1 620 39.7
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 1.7e-112 411.0 603 42.5
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 6.4e-112 409.1 610 40.3
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 5.4e-111 406.0 656 41.3
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.3e-109 401.4 678 39.2
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 2.3e-109 400.6 600 40.7
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 1.9e-108 397.5 607 40.9
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 1.9e-108 397.5 538 42.9
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 7.3e-108 395.6 606 40.8
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 3.4e-105 386.7 609 39.6
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 9.3e-103 378.6 584 41.3
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 1.1e-100 371.7 469 46.9
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 1.9e-100 370.9 625 40.6
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 9.6e-100 368.6 601 37.4
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 5.3e-98 362.8 601 36.8
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 9.0e-98 362.1 607 39.2
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 7.6e-97 359.0 601 37.1
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 3.2e-95 353.6 483 45.8
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 5.4e-95 352.8 481 43.2
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 9.3e-95 352.1 683 37.0
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 3.3e-92 343.6 611 38.1
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 4.5e-89 333.2 646 36.1
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 4.5e-89 333.2 394 44.7
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 9.3e-87 325.5 487 42.9
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 3.0e-85 320.5 613 35.4
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 8.7e-85 318.9 439 46.0
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 1.9e-84 317.8 689 34.0
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.7e-83 313.5 497 40.2
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 4.5e-81 306.6 616 33.9
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 7.6e-81 305.8 601 35.6
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 1.3e-80 305.1 663 34.4
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.2e-80 304.3 473 38.5
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 8.4e-80 302.4 395 42.3
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 1.9e-79 301.2 562 37.2
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 2.5e-79 300.8 404 41.3
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 1.8e-77 294.7 669 33.6
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 1.8e-77 294.7 669 33.6
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 2.5e-76 290.8 462 37.9
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 5.7e-76 289.7 656 33.2
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 9.0e-74 282.3 629 32.9
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 4.2e-71 273.5 387 41.6
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 5.1e-69 266.5 360 41.7
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.5e-68 265.0 425 39.3
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 2.4e-66 257.7 599 31.7
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.3e-64 251.9 605 33.4
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 1.7e-59 235.0 408 37.7
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.2e-57 228.8 447 36.0
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.3e-53 214.5 344 38.1
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 4.0e-45 187.2 176 56.8
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.5e-39 168.7 388 30.9
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 9.4e-39 166.0 147 59.9
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.4e-37 162.2 229 38.4
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 1.4e-37 162.2 218 45.4
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 3.4e-36 157.5 218 42.7
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.8e-35 154.5 409 31.5
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.0e-33 148.3 247 39.7
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 3.5e-33 147.5 218 42.2
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.5e-33 147.1 333 33.0
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 6.6e-32 143.3 133 52.6
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.1e-31 142.5 105 64.8
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.6e-30 138.7 126 53.2
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 3.6e-30 137.5 159 54.7
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 8.3e-27 126.3 445 26.7
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 1.6e-25 122.1 218 37.2
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.5e-23 115.5 197 34.5
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 5.2e-21 107.1 363 27.5
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 8.9e-21 106.3 208 34.1
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.2e-19 101.7 105 50.5
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 2.2e-19 101.7 111 50.5
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 2.4e-18 98.2 129 39.5
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 6.0e-17 93.6 80 56.2
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 1.0e-16 92.8 66 65.2
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 2.3e-16 91.7 87 52.9
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 2.5e-15 88.2 103 45.6
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 7.3e-15 86.7 676 23.8
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 2.1e-14 85.1 226 31.0
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 2.8e-14 84.7 148 37.8
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.8e-14 84.7 103 49.5
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.7e-14 84.0 143 42.7
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.5e-12 79.0 81 49.4
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 2.0e-12 78.6 128 37.5
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 3.4e-12 77.8 115 40.9
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.7e-11 75.5 90 45.6
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 2.9e-11 74.7 80 41.2
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 1.1e-10 72.8 162 38.9
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 1.6e-09 68.9 132 36.4
HPP92_015986 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.7e-08 65.5 74 47.3
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 3.0e-08 64.7 138 35.5
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.1e-07 62.8 70 50.0
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 5.6e-07 60.5 154 30.5
PRCOL_00000416 Prasinoderma coloniale HOM05D004086 ORTHO05D004641 7.3e-07 60.1 413 24.5
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 8.1e-06 56.6 82 41.5


User provided reference genes

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