Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01181 Eucalyptus grandis HOM05D004536 ORTHO05D005628 2.7e-77 292.0 153 100.0
Cfa005976 Carpinus fangiana HOM05D004536 ORTHO05D005628 1.5e-19 100.1 148 47.3
Haze_04870 Corylus avellana HOM05D004536 ORTHO05D005628 1.3e-18 97.1 148 45.9
Thecc.01G294900 Theobroma cacao HOM05D004536 ORTHO05D005628 1.7e-18 96.7 151 46.4
QL12p030151 Quercus lobata HOM05D004536 ORTHO05D005628 3.7e-18 95.5 75 64.0
CsaV3_7G029010 Cucumis sativus L. HOM05D004536 ORTHO05D005628 1.4e-17 93.6 137 43.8
ClCG09G006150 Citrullus lanatus HOM05D004536 ORTHO05D005628 2.4e-17 92.8 113 46.0
TPR.G9637 Trifolium pratense HOM05D004536 ORTHO05D005628 4.1e-17 92.0 81 58.0
Gorai.007G129700 Gossypium raimondii HOM05D004536 ORTHO05D005628 9.2e-17 90.9 72 62.5
Lj1g0006956 Lotus japonicus HOM05D004536 ORTHO05D005628 2.1e-16 89.7 122 43.4
Medtr7g108500 Medicago truncatula HOM05D004536 ORTHO05D005628 2.1e-16 89.7 141 39.7
Gohir.A11G115900 Gossypium hirsutum HOM05D004536 ORTHO05D005628 3.5e-16 89.0 72 61.1
Gohir.D11G120800 Gossypium hirsutum HOM05D004536 ORTHO05D005628 6.0e-16 88.2 72 61.1
RcHm_v2.0_Chr6g0293261 Rosa chinensis HOM05D004536 ORTHO05D005628 6.0e-16 88.2 119 44.5
Thhalv10007445m.g Eutrema salsugineum HOM05D004536 ORTHO05D005628 7.8e-16 87.8 82 57.3
Sed0010277 Sechium edule HOM05D004536 ORTHO05D005628 7.8e-16 87.8 111 45.0
arahy.Tifrunner.gnm1.ann1.BFHA12 Arachis hypogaea HOM05D004536 ORTHO05D005628 1.0e-15 87.4 136 46.3
arahy.Tifrunner.gnm1.ann1.RD3VC2 Arachis hypogaea HOM05D004536 ORTHO05D005628 1.0e-15 87.4 136 46.3
AT1G02970 Arabidopsis thaliana HOM05D004536 ORTHO05D005628 3.0e-15 85.9 139 40.3
Sp1g01960 Schrenkiella parvula HOM05D004536 ORTHO05D005628 3.0e-15 85.9 82 56.1
THA.LOC104801260 Tarenaya hassleriana HOM05D004536 ORTHO05D005628 3.0e-15 85.9 78 55.1
Carub.0001s0210 Capsella rubella HOM05D004536 ORTHO05D005628 3.9e-15 85.5 88 50.0
CARHR002300 Cardamine hirsuta HOM05D004536 ORTHO05D005628 3.9e-15 85.5 64 64.1
FvH4_c6g00040 Fragaria vesca HOM05D004536 ORTHO05D005628 3.9e-15 85.5 121 44.6
FAN24G0904 Fragaria x ananassa HOM05D004536 ORTHO05D005628 3.9e-15 85.5 121 44.6
Aa31LG1G9600 Aethionema arabicum HOM05D004536 ORTHO05D005628 5.1e-15 85.1 55 69.1
C08p53070 Brassica napus HOM05D004536 ORTHO05D005628 5.1e-15 85.1 53 71.7
Rhsim01G0282800 Rhododendron simsii HOM05D004536 ORTHO05D005628 6.6e-15 84.7 113 43.4
vmacro14989 Vaccinium macrocarpon HOM05D004536 ORTHO05D005628 6.6e-15 84.7 72 58.3
TAR636G0132 Trochodendron aralioides HOM05D000319 ORTHO05D000903 8.6e-15 84.3 125 42.4
BcaC07g42280 Brassica carinata HOM05D004536 ORTHO05D005628 1.5e-14 83.6 65 61.5
BcaC07g42414 Brassica carinata HOM05D004536 ORTHO05D005628 1.5e-14 83.6 53 69.8
Ca_09139_v3 Cicer arietinum L. HOM05D004536 ORTHO05D005628 1.5e-14 83.6 155 40.6
Glyma.03G211900 Glycine max HOM05D004536 ORTHO05D005628 1.5e-14 83.6 153 40.5
Manes.05G065100 Manihot esculenta HOM05D004536 ORTHO05D005628 1.5e-14 83.6 155 38.7
Phvul.001G204900 Phaseolus vulgaris HOM05D004536 ORTHO05D005628 1.9e-14 83.2 135 42.2
GSVIVG01010948001 Vitis vinifera HOM05D004536 ORTHO05D005628 1.9e-14 83.2 78 56.4
CSS0025822 Camellia sinensis var. sinensis HOM05D004536 ORTHO05D005628 2.5e-14 82.8 92 48.9
FAN15G2314 Fragaria x ananassa HOM05D004536 ORTHO05D005628 2.5e-14 82.8 121 43.8
Prupe.8G256300 Prunus persica HOM05D004536 ORTHO05D005628 2.5e-14 82.8 53 69.8
PGR090G0002 Punica granatum HOM05D004536 ORTHO05D005628 3.3e-14 82.4 140 44.3
PGR119G2278 Punica granatum HOM05D004536 ORTHO05D005628 3.3e-14 82.4 140 44.3
Ciclev10024323m.g Citrus clementina HOM05D004536 ORTHO05D005628 4.3e-14 82.0 83 51.8
A09p68450 Brassica napus HOM05D004536 ORTHO05D005628 7.3e-14 81.3 53 67.9
BraA09t42188Z Brassica rapa HOM05D004536 ORTHO05D005628 7.3e-14 81.3 53 67.9
Potri.002G208251 Populus trichocarpa HOM05D004536 ORTHO05D005628 7.3e-14 81.3 80 52.5
Actinidia24840 Actinidia chinensis HOM05D004536 ORTHO05D005628 1.2e-13 80.5 52 69.2
VMungo1383G2476 Vigna mungo HOM05D004536 ORTHO05D005628 1.2e-13 80.5 151 41.1
Sabra02G0151200 Salix brachista HOM05D004536 ORTHO05D005628 2.8e-13 79.3 52 67.3
Sabra02G0151800 Salix brachista HOM05D004536 ORTHO05D005628 2.8e-13 79.3 52 67.3
MELO3C016039.2 Cucumis melo HOM05D004536 ORTHO05D005628 3.6e-13 79.0 142 38.7
Lalb_Chr18g0047231 Lupinus albus HOM05D004536 ORTHO05D005628 4.7e-13 78.6 51 68.6
CANSAT25G0197 Cannabis sativa HOM05D004536 ORTHO05D005628 6.2e-13 78.2 55 63.6
Potri.014G132400 Populus trichocarpa HOM05D004536 ORTHO05D005628 6.2e-13 78.2 78 51.3
Ah.08g212380 Amaranthus hybridus HOM05D004536 ORTHO05D005628 1.1e-12 77.4 60 58.3
Cpa.g.sc9.197 Carica papaya HOM05D004536 ORTHO05D005628 1.4e-12 77.0 156 42.3
CiPaw.07G104100 Carya illinoinensis HOM05D004536 ORTHO05D005628 1.4e-12 77.0 123 39.0
Nitab4.5_0001697g0010 Nicotiana tabacum HOM05D004536 ORTHO05D005628 1.4e-12 77.0 78 53.8
Aqoxy5G00653 Aquilegia oxysepala HOM05D005016 ORTHO05D005628 1.8e-12 76.6 55 63.6
BraA08t35647Z Brassica rapa HOM05D004536 ORTHO05D005628 1.8e-12 76.6 66 59.1
Dinv33024 Davidia involucrata HOM05D004536 ORTHO05D005628 1.8e-12 76.6 158 38.6
A08p37490 Brassica napus HOM05D004536 ORTHO05D005628 2.3e-12 76.3 66 59.1
C08p00400 Brassica napus HOM05D004536 ORTHO05D005628 2.3e-12 76.3 53 66.0
BolC8t46839H Brassica oleracea HOM05D004536 ORTHO05D005628 2.3e-12 76.3 53 66.0
Atru.chr2.3824 Acer truncatum HOM05D004536 ORTHO05D005628 3.1e-12 75.9 52 65.4
Lj2A1189G43 Lonicera japonica HOM05D004536 ORTHO05D005628 4.0e-12 75.5 86 52.3
MD11G1303200 Malus domestica HOM05D004536 ORTHO05D005628 4.0e-12 75.5 117 41.0
Manes.01G215900 Manihot esculenta HOM05D004536 ORTHO05D005628 5.2e-12 75.1 155 40.0
Psat3g023800 Pisum sativum HOM05D004536 ORTHO05D005628 5.2e-12 75.1 81 45.7
AUR62008593 Chenopodium quinoa HOM05D004536 ORTHO05D005628 6.8e-12 74.7 75 52.0
MD03G1283400 Malus domestica HOM05D004536 ORTHO05D005628 6.8e-12 74.7 96 46.9
EL10Ac7g17495 Beta vulgaris HOM05D004536 ORTHO05D005628 8.9e-12 74.3 84 51.2
BcaB01g06383 Brassica carinata HOM05D004536 ORTHO05D005628 1.2e-11 73.9 50 68.0
AUR62033185 Chenopodium quinoa HOM05D004536 ORTHO05D005628 1.2e-11 73.9 72 54.2
SalBow2G0652 Salvia bowleyana HOM05D004536 ORTHO05D005628 1.5e-11 73.6 77 50.6
Nn4g25926 Nelumbo nucifera HOM05D004536 ORTHO05D005628 2.6e-11 72.8 165 35.8
MBI16_g23764_MAGBIO Magnolia biondii HOM05D004536 ORTHO05D005628 3.4e-11 72.4 153 39.9
Nitab4.5_0009457g0010 Nicotiana tabacum HOM05D004536 ORTHO05D005628 3.4e-11 72.4 78 52.6
BcaB03g13494 Brassica carinata HOM05D004536 ORTHO05D005628 5.8e-11 71.6 51 66.7
Sopen09g029670 Solanum pennellii HOM05D004536 ORTHO05D005628 5.8e-11 71.6 96 51.0
CAN.G339.41 Capsicum annuum HOM05D004536 ORTHO05D005628 9.9e-11 70.9 84 51.2
Hund18118 Selenicereus undatus HOM05D004536 ORTHO05D005628 1.7e-10 70.1 150 36.7
Solyc09g074830.3 Solanum lycopersicum HOM05D004536 ORTHO05D005628 1.7e-10 70.1 87 49.4
CDE10G0909 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 6.4e-10 68.2 114 36.0
SGA_v2.0_scaffold36G14354 Striga asiatica HOM05D004536 ORTHO05D005628 6.4e-10 68.2 88 46.6
Os02g0135300 Oryza sativa ssp. japonica HOM05D004536 ORTHO05D005628 8.4e-10 67.8 88 45.5
Atru.chr5.1223 Acer truncatum HOM05D004536 ORTHO05D005628 1.9e-09 66.6 44 65.9
Cc01_g20560 Coffea canephora HOM05D004536 ORTHO05D005628 2.4e-09 66.2 122 37.7
Ah.15g093870 Amaranthus hybridus HOM05D000154 ORTHO05D000092 4.1e-09 65.5 94 41.5
PSO210G1618 Papaver somniferum HOM05D004536 ORTHO05D005628 1.2e-08 63.9 165 35.2
HPP92_021845 Vanilla planifolia HOM05D004536 ORTHO05D005628 4.6e-08 62.0 65 50.8
VMungo0540G1844 Vigna mungo HOM05D004536 ORTHO05D005628 4.6e-08 62.0 72 44.4
Zm00001eb209170 Zea mays HOM05D004536 ORTHO05D005628 6.0e-08 61.6 168 34.5
HanXRQChr06g0163971 Helianthus annuus HOM05D004536 ORTHO05D005628 7.8e-08 61.2 125 34.4
ATR0598G141 Amborella trichopoda HOM05D004536 ORTHO05D005628 8.6e-07 57.8 59 49.2
Glyma.13G025500 Glycine max HOM05D004536 ORTHO05D005628 8.6e-07 57.8 57 56.1
Lsat_1_v5_gn_8_54521 Lactuca sativa HOM05D004536 ORTHO05D005628 1.1e-06 57.4 148 35.8
DCAR_012399 Daucus carota HOM05D004536 ORTHO05D005628 1.9e-06 56.6 152 34.2
ECA236G2131 Erigeron canadensis HOM05D004536 ORTHO05D005628 1.9e-06 56.6 52 57.7
Migut.N01407 Erythranthe guttata HOM05D004536 ORTHO05D005628 1.9e-06 56.6 49 53.1
DCAR_018342 Daucus carota HOM05D004536 ORTHO05D005628 5.6e-06 55.1 50 50.0
Phvul.001G172200 Phaseolus vulgaris HOM05D004536 ORTHO05D005628 9.6e-06 54.3 56 50.0


User provided reference genes

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