Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 1.4e-246 855.9 443 100.0
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 5.7e-184 647.9 437 74.8
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 9.7e-184 647.1 416 77.6
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 4.1e-182 641.7 424 77.1
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 5.3e-182 641.3 416 77.6
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 2.0e-181 639.4 416 76.0
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 2.6e-181 639.0 437 73.7
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 5.9e-181 637.9 424 76.7
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 1.0e-180 637.1 424 74.5
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 1.7e-180 636.3 438 73.5
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 8.5e-180 634.0 439 74.0
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 3.2e-179 632.1 424 73.8
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 3.2e-179 632.1 443 73.6
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 2.7e-178 629.0 424 74.1
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 3.6e-178 628.6 416 76.0
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 7.9e-178 627.5 439 72.9
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 1.0e-177 627.1 443 72.5
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 2.3e-177 625.9 404 77.5
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 3.0e-177 625.5 439 73.3
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 3.0e-177 625.5 445 72.4
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 6.7e-177 624.4 443 71.6
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 8.8e-177 624.0 435 73.3
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 8.8e-177 624.0 422 74.2
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 8.8e-177 624.0 424 73.8
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 1.1e-176 623.6 419 76.1
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 1.1e-176 623.6 418 75.8
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 1.5e-176 623.2 418 73.9
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 2.5e-176 622.5 443 72.2
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 4.3e-176 621.7 434 74.4
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 7.4e-176 620.9 412 75.0
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 7.4e-176 620.9 436 72.5
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 9.7e-176 620.5 426 73.0
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 2.2e-175 619.4 427 73.5
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 2.2e-175 619.4 435 72.6
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 3.7e-175 618.6 416 74.8
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 8.2e-175 617.5 408 75.2
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 5.3e-174 614.8 444 70.9
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 9.1e-174 614.0 427 73.5
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 9.1e-174 614.0 422 73.2
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 1.5e-173 613.2 434 72.8
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 2.0e-173 612.8 442 70.6
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 2.6e-173 612.5 413 73.6
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.0e-172 610.5 434 72.4
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 1.3e-172 610.1 429 72.3
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 1.7e-172 609.8 418 71.5
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 2.9e-172 609.0 419 72.6
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.9e-172 609.0 434 72.6
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 5.0e-172 608.2 427 71.9
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 5.0e-172 608.2 438 70.1
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 6.5e-172 607.8 424 71.5
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 8.5e-172 607.4 443 69.5
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 1.1e-171 607.1 416 74.3
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 1.1e-171 607.1 432 70.6
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 5.5e-171 604.7 418 70.3
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 7.9e-170 600.9 436 69.0
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 1.4e-169 600.1 414 75.1
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 1.4e-169 600.1 437 70.5
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 6.7e-169 597.8 441 70.3
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 8.8e-169 597.4 413 72.9
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 5.7e-168 594.7 430 71.9
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 5.7e-168 594.7 443 69.8
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 2.8e-167 592.4 413 73.4
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 6.3e-167 591.3 413 73.1
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 8.2e-167 590.9 407 73.7
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 1.8e-166 589.7 431 70.8
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 2.4e-166 589.3 423 69.7
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 1.7e-164 583.2 443 70.7
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 1.7e-164 583.2 443 70.7
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 2.2e-164 582.8 397 74.8
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 8.5e-164 580.9 419 69.2
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 1.1e-163 580.5 435 69.7
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 1.9e-163 579.7 418 72.2
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 1.2e-162 577.0 411 71.5
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 1.2e-162 577.0 540 59.8
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 8.0e-162 574.3 388 71.6
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 6.7e-161 571.2 439 67.4
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 2.6e-160 569.3 407 70.8
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 3.3e-160 568.9 432 69.2
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 1.3e-159 567.0 499 61.3
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 1.7e-159 566.6 443 66.6
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 2.2e-159 566.2 422 68.0
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 2.8e-159 565.8 460 65.7
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 2.2e-156 556.2 414 69.1
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 1.2e-154 550.4 426 67.8
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 8.0e-154 547.7 442 66.7
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 2.3e-153 546.2 414 66.4
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 5.7e-152 541.6 381 74.8
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 2.8e-151 539.3 389 68.4
QL12p027136 Quercus lobata HOM05D001496 ORTHO05D007453 1.4e-150 537.0 371 75.7
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 5.9e-149 531.6 369 72.4
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 5.7e-144 515.0 441 59.6
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 1.4e-142 510.4 410 62.7
TAR633G2480 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.4e-142 510.4 362 73.2
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 1.2e-136 490.7 406 61.1
FvH4_2g25370 Fragaria vesca HOM05D001496 ORTHO05D007453 1.1e-134 484.2 333 73.3
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 1.4e-129 467.2 418 61.0
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 1.3e-127 460.7 397 59.4
CARHR143130 Cardamine hirsuta HOM05D001496 ORTHO05D007453 2.3e-124 449.9 335 69.9
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 1.6e-117 427.2 439 56.7
BraA05t19016Z Brassica rapa HOM05D001496 ORTHO05D007453 1.1e-115 421.0 340 66.8
Ah.16g101380 Amaranthus hybridus HOM05D001496 ORTHO05D007453 8.9e-113 411.4 327 69.7
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 1.5e-112 410.6 408 55.4
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 3.4e-112 409.5 303 66.7
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.6e-101 374.0 252 75.8
FAN20G0671 Fragaria x ananassa HOM05D001496 ORTHO05D007453 4.9e-95 352.4 344 59.9
MCO05G420 Micromonas commoda HOM05D001496 ORTHO05D007453 2.1e-90 337.0 397 46.6
FAN15G0073 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.8e-84 317.4 223 76.2
MD03G1285200 Malus domestica HOM05D001496 ORTHO05D007453 3.3e-83 313.2 210 79.5
MD03G1285100 Malus domestica HOM05D001496 ORTHO05D007453 1.4e-81 307.8 219 67.1
PRCOL_00006487 Prasinoderma coloniale HOM05D001496 ORTHO05D007453 1.9e-75 287.3 389 44.5
Haze_26252 Corylus avellana HOM05D001496 ORTHO05D007453 1.5e-64 251.1 391 39.4
Gohir.A05G239300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 4.2e-54 216.5 146 75.3
COL.COLO4_15168 Corchorus olitorius HOM05D001496 ORTHO05D007453 3.7e-50 203.4 120 82.5
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 7.2e-46 189.1 112 82.1
Gohir.A01G111300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 7.2e-46 189.1 130 74.6
Gohir.A02G071100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.8e-44 184.5 130 73.1
Gohir.A12G153600 Gossypium hirsutum HOM05D001496 ORTHO05D007453 3.3e-43 180.3 130 71.5
Gohir.A07G160700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 5.7e-35 152.9 102 79.4
Os01g0172000 Oryza sativa ssp. japonica HOM05D001496 ORTHO05D007453 1.3e-34 151.8 107 67.3
A03p26050 Brassica napus HOM05D000073 ORTHO05D000033 5.0e-31 139.8 84 79.8
BraA03t11820Z Brassica rapa HOM05D001496 ORTHO05D007453 1.5e-30 138.3 84 78.6
FAN27G2092 Fragaria x ananassa HOM05D001496 ORTHO05D007453 8.3e-26 122.5 92 62.0
MBI19_g29447_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 1.4e-25 121.7 73 79.5
MBI14_g09685_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 2.3e-23 114.4 73 76.7
SEGI_39661 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 4.3e-22 110.2 68 66.2
SEGI_31251 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 9.5e-22 109.0 82 63.4
BolC3t15455H Brassica oleracea HOM05D001496 ORTHO05D007453 5.2e-20 103.2 123 51.2
C03p31050 Brassica napus HOM05D001496 ORTHO05D007453 4.9e-18 96.7 125 49.6
QL02p058842 Quercus lobata HOM05D001496 ORTHO05D000125 4.9e-18 96.7 49 87.8
Actinidia02729 Actinidia chinensis HOM05D001496 ORTHO05D007453 1.0e-15 89.0 221 38.9
HanXRQChr05g0138141 Helianthus annuus HOM05D001496 ORTHO05D007453 5.6e-14 83.2 43 81.4
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 1.2e-13 82.0 51 78.4
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 4.4e-11 73.6 41 78.0


User provided reference genes

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