Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.7e-44 182.2 87 100.0
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 3.1e-25 118.2 76 69.7
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 7.8e-21 103.6 63 71.4
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.9e-19 99.0 74 59.5
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 9.5e-19 96.7 73 60.3
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 9.5e-19 96.7 75 61.3
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 2.1e-18 95.5 83 55.4
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 3.6e-18 94.7 64 65.6
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 4.7e-18 94.4 71 62.0
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 4.7e-18 94.4 63 65.1
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 1.1e-17 93.2 70 54.3
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 1.4e-17 92.8 82 57.3
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 1.8e-17 92.4 66 63.6
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 1.8e-17 92.4 68 63.2
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 2.4e-17 92.0 64 64.1
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 3.1e-17 91.7 83 54.2
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 6.8e-17 90.5 83 54.2
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 6.8e-17 90.5 67 59.7
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 6.8e-17 90.5 64 64.1
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 2.6e-16 88.6 74 58.1
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 2.6e-16 88.6 64 62.5
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 3.4e-16 88.2 73 52.1
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 5.8e-16 87.4 65 56.9
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 5.8e-16 87.4 67 55.2
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 7.6e-16 87.0 63 61.9
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 9.9e-16 86.7 63 63.5
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 1.3e-15 86.3 63 63.5
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 1.7e-15 85.9 64 57.8
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.7e-15 85.9 77 54.5
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 1.7e-15 85.9 80 48.8
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 2.2e-15 85.5 63 63.5
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 2.2e-15 85.5 67 59.7
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 2.2e-15 85.5 66 59.1
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 2.9e-15 85.1 60 58.3
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 6.4e-15 84.0 62 54.8
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 1.1e-14 83.2 83 50.6
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 1.4e-14 82.8 63 60.3
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.9e-14 82.4 62 56.5
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.9e-14 82.4 62 56.5
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 2.4e-14 82.0 55 61.8
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 2.4e-14 82.0 63 58.7
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 3.2e-14 81.6 79 46.8
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 5.4e-14 80.9 67 59.7
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 1.6e-13 79.3 63 57.1
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.6e-13 79.3 63 52.4
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 2.1e-13 79.0 63 55.6
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 2.1e-13 79.0 65 60.0
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 2.7e-13 78.6 65 63.1
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 4.6e-13 77.8 75 52.0
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 4.6e-13 77.8 58 56.9
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 7.8e-13 77.0 81 48.1
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 1.3e-12 76.3 65 56.9
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 1.3e-12 76.3 72 50.0
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 1.7e-12 75.9 84 47.6
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.7e-12 75.9 64 59.4
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 2.3e-12 75.5 67 53.7
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 3.9e-12 74.7 67 52.2
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 3.9e-12 74.7 66 57.6
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 3.9e-12 74.7 58 56.9
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 3.9e-12 74.7 63 49.2
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 3.9e-12 74.7 60 63.3
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 3.9e-12 74.7 69 55.1
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 5.1e-12 74.3 64 57.8
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 5.1e-12 74.3 64 57.8
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 5.1e-12 74.3 64 57.8
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 5.1e-12 74.3 64 56.2
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 6.6e-12 73.9 75 52.0
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 6.6e-12 73.9 75 50.7
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 8.7e-12 73.6 65 55.4
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 8.7e-12 73.6 67 53.7
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 1.1e-11 73.2 65 53.8
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 1.1e-11 73.2 64 56.2
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 1.1e-11 73.2 64 56.2
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 1.1e-11 73.2 64 56.2
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 1.1e-11 73.2 63 49.2
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.5e-11 72.8 58 53.4
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.5e-11 72.8 62 50.0
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 1.5e-11 72.8 55 54.5
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 1.5e-11 72.8 87 41.4
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 1.5e-11 72.8 63 52.4
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 1.5e-11 72.8 66 48.5
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 1.5e-11 72.8 67 53.7
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 1.9e-11 72.4 64 56.2
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 1.9e-11 72.4 64 56.2
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 1.9e-11 72.4 65 49.2
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 1.9e-11 72.4 88 43.2
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 1.9e-11 72.4 77 46.8
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.5e-11 72.0 60 55.0
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.5e-11 72.0 60 55.0
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 3.3e-11 71.6 64 54.7
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 3.3e-11 71.6 61 52.5
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 4.3e-11 71.2 65 47.7
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 4.3e-11 71.2 65 47.7
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 4.3e-11 71.2 65 50.8
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 4.3e-11 71.2 72 44.4
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 5.6e-11 70.9 64 56.2
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 5.6e-11 70.9 59 52.5
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 5.6e-11 70.9 90 42.2
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 7.3e-11 70.5 64 56.2
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 7.3e-11 70.5 64 56.2
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 7.3e-11 70.5 76 47.4
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 7.3e-11 70.5 59 47.5
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 9.6e-11 70.1 63 46.0
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 9.6e-11 70.1 64 54.7
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 9.6e-11 70.1 64 54.7
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 9.6e-11 70.1 63 50.8
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 9.6e-11 70.1 58 55.2
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 9.6e-11 70.1 55 52.7
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 1.3e-10 69.7 75 48.0
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 1.3e-10 69.7 64 54.7
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.3e-10 69.7 62 46.8
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 1.3e-10 69.7 63 50.8
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 1.6e-10 69.3 64 56.2
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 1.6e-10 69.3 64 56.2
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 1.6e-10 69.3 54 55.6
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.6e-10 69.3 65 52.3
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 2.1e-10 68.9 71 52.1
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 2.1e-10 68.9 67 50.7
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 2.1e-10 68.9 64 54.7
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.1e-10 68.9 55 50.9
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 2.8e-10 68.6 66 53.0
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.8e-10 68.6 62 51.6
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 2.8e-10 68.6 63 50.8
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 2.8e-10 68.6 63 50.8
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 2.8e-10 68.6 63 52.4
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 2.8e-10 68.6 68 48.5
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 2.8e-10 68.6 63 50.8
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 3.6e-10 68.2 79 45.6
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 3.6e-10 68.2 67 50.7
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.6e-10 68.2 63 50.8
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 6.2e-10 67.4 62 50.0
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 6.2e-10 67.4 65 52.3
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 8.1e-10 67.0 64 50.0
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 8.1e-10 67.0 64 50.0
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 8.1e-10 67.0 61 50.8
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.8e-09 65.9 62 46.8
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 1.8e-09 65.9 64 51.6
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 3.1e-09 65.1 75 45.3
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 3.1e-09 65.1 63 47.6
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 5.3e-09 64.3 61 49.2
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 5.3e-09 64.3 61 49.2
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 6.9e-09 63.9 83 39.8
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 9.0e-09 63.5 58 50.0
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 9.0e-09 63.5 62 45.2
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 2.0e-08 62.4 39 69.2
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 2.6e-08 62.0 64 40.6
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 5.8e-08 60.8 68 45.6
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 7.6e-08 60.5 63 47.6
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 7.6e-08 60.5 54 48.1
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 1.3e-07 59.7 55 43.6
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 1.7e-07 59.3 41 63.4
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 2.2e-07 58.9 63 42.9
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 2.2e-07 58.9 48 62.5
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 6.4e-07 57.4 63 41.3


User provided reference genes

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