Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.8e-87 323.6 159 100.0
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.7e-75 283.9 152 92.1
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.1e-68 260.4 152 86.8
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.1e-68 260.4 151 83.4
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-60 236.9 154 79.2
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.2e-55 218.0 152 74.3
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.7e-51 205.7 141 74.5
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.2e-40 170.2 158 63.3
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-39 167.2 158 62.7
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.6e-38 162.5 152 60.5
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 1.9e-36 156.4 168 53.0
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 3.0e-34 149.1 163 53.4
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 1.1e-33 147.1 164 53.0
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 5.6e-33 144.8 162 51.2
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 3.1e-31 139.0 155 52.3
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 2.0e-30 136.3 166 51.2
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 2.0e-30 136.3 165 50.9
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 4.4e-30 135.2 160 49.4
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 4.4e-30 135.2 168 48.8
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 1.3e-29 133.7 168 51.2
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.7e-29 133.3 168 47.0
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.2e-29 132.9 168 48.2
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 3.7e-29 132.1 158 48.1
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 6.4e-29 131.3 169 47.9
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.4e-29 131.3 166 48.8
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 6.4e-29 131.3 165 49.1
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 6.4e-29 131.3 167 50.9
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 8.4e-29 131.0 162 50.0
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 1.1e-28 130.6 170 50.0
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 1.9e-28 129.8 162 49.4
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 3.2e-28 129.0 170 50.0
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 4.1e-28 128.6 155 46.5
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 4.1e-28 128.6 163 52.8
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 5.4e-28 128.3 152 48.7
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 5.4e-28 128.3 158 48.7
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 7.1e-28 127.9 168 47.0
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 1.2e-27 127.1 176 43.8
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.6e-27 126.7 164 48.2
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 2.1e-27 126.3 162 49.4
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.7e-27 125.9 165 48.5
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 2.7e-27 125.9 165 49.1
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 4.6e-27 125.2 157 46.5
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 6.0e-27 124.8 152 48.7
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 6.0e-27 124.8 161 45.3
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 7.8e-27 124.4 173 46.2
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 1.0e-26 124.0 159 47.2
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 1.0e-26 124.0 160 50.6
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 2.3e-26 122.9 164 46.3
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 3.0e-26 122.5 161 46.0
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 3.0e-26 122.5 156 48.1
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 3.0e-26 122.5 159 45.9
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 5.1e-26 121.7 157 45.2
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 6.6e-26 121.3 161 46.6
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 6.6e-26 121.3 157 45.2
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 6.6e-26 121.3 157 45.2
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 6.6e-26 121.3 161 45.3
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 6.6e-26 121.3 160 47.5
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 8.6e-26 120.9 159 45.3
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 8.6e-26 120.9 154 46.1
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 8.6e-26 120.9 160 46.2
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.1e-25 120.6 163 46.6
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 1.1e-25 120.6 161 49.7
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 1.5e-25 120.2 162 44.4
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 1.5e-25 120.2 160 42.5
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 2.5e-25 119.4 155 46.5
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 2.5e-25 119.4 165 46.1
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 3.3e-25 119.0 159 47.2
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 3.3e-25 119.0 159 47.2
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.3e-25 119.0 167 47.9
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 3.3e-25 119.0 160 49.4
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 3.3e-25 119.0 174 41.4
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 4.3e-25 118.6 174 47.1
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 7.3e-25 117.9 169 45.0
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 7.3e-25 117.9 161 46.0
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 7.3e-25 117.9 160 43.1
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 9.6e-25 117.5 165 46.7
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 1.2e-24 117.1 157 44.6
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 1.2e-24 117.1 170 42.4
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 1.6e-24 116.7 156 46.2
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 2.1e-24 116.3 154 41.6
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.1e-24 116.3 167 49.1
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 3.6e-24 115.5 160 45.6
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 3.6e-24 115.5 160 45.6
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 3.6e-24 115.5 166 46.4
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 4.7e-24 115.2 158 44.9
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 4.7e-24 115.2 157 45.9
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 4.7e-24 115.2 165 48.5
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 6.2e-24 114.8 164 44.5
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 1.1e-23 114.0 161 44.1
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.4e-23 113.6 169 46.7
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 1.8e-23 113.2 161 44.7
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.8e-23 113.2 160 44.4
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.4e-23 112.8 171 42.7
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 2.4e-23 112.8 175 44.6
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 3.1e-23 112.5 155 43.2
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 3.1e-23 112.5 158 44.3
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-23 112.5 171 43.9
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 4.0e-23 112.1 172 47.1
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 5.2e-23 111.7 171 45.0
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 8.9e-23 110.9 159 46.5
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 8.9e-23 110.9 178 43.8
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 8.9e-23 110.9 178 43.8
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 8.9e-23 110.9 178 43.8
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 8.9e-23 110.9 158 46.8
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 1.2e-22 110.5 167 46.7
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.5e-22 110.2 163 45.4
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 1.5e-22 110.2 178 41.6
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 2.0e-22 109.8 161 44.7
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.0e-22 109.8 157 44.6
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.6e-22 109.4 178 41.6
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 3.4e-22 109.0 169 45.0
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 4.4e-22 108.6 160 45.6
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 5.8e-22 108.2 156 44.2
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 5.8e-22 108.2 163 42.9
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 7.6e-22 107.8 166 43.4
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 1.3e-21 107.1 161 42.2
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 2.2e-21 106.3 162 42.6
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 2.9e-21 105.9 157 44.6
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 2.9e-21 105.9 161 43.5
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 3.8e-21 105.5 147 44.9
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 6.4e-21 104.8 176 40.3
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.4e-21 104.8 172 42.4
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 8.4e-21 104.4 160 43.1
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 8.4e-21 104.4 173 41.6
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 1.4e-20 103.6 155 43.2
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 1.4e-20 103.6 167 44.9
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 2.4e-20 102.8 161 42.9
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 2.4e-20 102.8 161 42.9
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 2.4e-20 102.8 161 42.9
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 4.2e-20 102.1 179 41.9
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 5.4e-20 101.7 159 44.7
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.2e-19 100.5 163 43.6
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 2.1e-19 99.8 162 45.1
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 3.5e-19 99.0 155 40.6
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 6.0e-19 98.2 164 43.9
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 6.0e-19 98.2 171 39.2
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 3.9e-18 95.5 166 41.6
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 5.1e-18 95.1 159 42.1
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 5.1e-18 95.1 141 44.7
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 5.1e-18 95.1 162 40.1
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 6.6e-18 94.7 193 40.4
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.1e-17 94.0 167 38.9
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 1.1e-17 94.0 149 42.3
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.5e-17 92.8 98 56.1
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 1.6e-16 90.1 159 40.3
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 8.1e-16 87.8 151 39.7
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 1.8e-15 86.7 142 39.4
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 2.4e-15 86.3 157 37.6
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.2e-14 84.0 162 37.0
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 1.5e-14 83.6 125 41.6
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 3.4e-14 82.4 210 34.8
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 4.4e-14 82.0 167 37.1
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 3.8e-13 79.0 155 37.4
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.9e-12 76.6 164 37.2
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 7.1e-12 74.7 140 38.6
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 1.2e-11 73.9 156 37.8
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-10 70.5 92 47.8
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 2.3e-10 69.7 189 34.4
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 3.0e-10 69.3 160 38.1
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 6.6e-10 68.2 116 40.5
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.7e-10 67.8 102 43.1
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.3e-09 65.9 96 45.8
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.3e-09 65.9 102 42.2
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.6e-08 63.5 147 34.0
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.6e-08 63.5 141 39.0
Nn2g14986 Nelumbo nucifera HOM05D003790 ORTHO05D004481 5.3e-07 58.5 50 52.0
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 2.6e-06 56.2 147 32.0
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 7.6e-06 54.7 154 31.8


User provided reference genes

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