Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01037 Eucalyptus grandis HOM05D007073 ORTHO05D008855 1.0e-82 310.1 158 100.0
Eucgr.H01040 Eucalyptus grandis HOM05D007073 ORTHO05D008855 4.7e-32 141.7 88 84.1
Eucgr.L01253 Eucalyptus grandis HOM05D007073 ORTHO05D008855 4.7e-32 141.7 79 91.1
TWI56G0686 Tripterygium wilfordii HOM05D007073 ORTHO05D008855 7.0e-28 127.9 88 73.9
COL.COLO4_26179 Corchorus olitorius HOM05D007073 ORTHO05D008855 1.2e-27 127.1 87 75.9
Atru.chr13.338 Acer truncatum HOM05D007073 ORTHO05D008855 4.6e-27 125.2 88 71.6
CSS0049768 Camellia sinensis var. sinensis HOM05D007073 ORTHO05D008855 7.8e-27 124.4 72 84.7
Dinv31819 Davidia involucrata HOM05D007073 ORTHO05D008855 1.0e-26 124.0 72 86.1
Duzib093G1738 Durio zibethinus HOM05D007073 ORTHO05D008855 1.7e-26 123.2 86 72.1
Hma1.2p1_0773F.1_g216240 Hydrangea macrophylla HOM05D007073 ORTHO05D008855 1.7e-26 123.2 72 84.7
Nn5g29254 Nelumbo nucifera HOM05D007073 ORTHO05D008855 1.7e-26 123.2 79 78.5
PGR031G0624 Punica granatum HOM05D007073 ORTHO05D008855 5.0e-26 121.7 79 77.2
arahy.Tifrunner.gnm1.ann1.0LW32C Arachis hypogaea HOM05D007073 ORTHO05D008855 6.6e-26 121.3 84 73.8
arahy.Tifrunner.gnm1.ann1.F1G2D9 Arachis hypogaea HOM05D007073 ORTHO05D008855 8.6e-26 120.9 88 71.6
CANSAT25G0010 Cannabis sativa HOM05D007073 ORTHO05D008855 8.6e-26 120.9 76 78.9
RcHm_v2.0_Chr6g0272121 Rosa chinensis HOM05D007073 ORTHO05D008855 8.6e-26 120.9 84 72.6
Psat7g072280 Pisum sativum HOM05D007073 ORTHO05D008855 1.1e-25 120.6 79 75.9
FvH4_5g30190 Fragaria vesca HOM05D007073 ORTHO05D008855 1.5e-25 120.2 84 72.6
RhsimUnG0148500 Rhododendron simsii HOM05D007073 ORTHO05D008855 1.5e-25 120.2 72 83.3
GSVIVG01009840001 Vitis vinifera HOM05D007073 ORTHO05D008855 1.5e-25 120.2 88 69.3
AUR62019145 Chenopodium quinoa HOM05D007073 ORTHO05D008855 1.9e-25 119.8 88 70.5
Potri.005G235800 Populus trichocarpa HOM05D007073 ORTHO05D008855 1.9e-25 119.8 78 76.9
Sabra05G0182000 Salix brachista HOM05D007073 ORTHO05D008855 1.9e-25 119.8 78 76.9
SalBow7G2056 Salvia bowleyana HOM05D007073 ORTHO05D008855 2.5e-25 119.4 87 70.1
PSO541G6379 Papaver somniferum HOM05D007073 ORTHO05D008855 5.6e-25 118.2 72 80.6
PSO675G5408 Papaver somniferum HOM05D007073 ORTHO05D008855 5.6e-25 118.2 72 80.6
HanXRQChr02g0044001 Helianthus annuus HOM05D007073 ORTHO05D008855 7.3e-25 117.9 72 80.6
SGA_v2.0_scaffold92G28274 Striga asiatica HOM05D007073 ORTHO05D008855 7.3e-25 117.9 87 67.8
THA.LOC104810648 Tarenaya hassleriana HOM05D007073 ORTHO05D008855 7.3e-25 117.9 79 75.9
unitig_32.g11146 Utricularia gibba HOM05D007073 ORTHO05D008855 7.3e-25 117.9 82 72.0
Haze_22602 Corylus avellana HOM05D000624 ORTHO05D000495 1.2e-24 117.1 78 74.4
QL02p010904 Quercus lobata HOM05D007073 ORTHO05D008855 1.2e-24 117.1 72 76.4
Glyma.08G113800 Glycine max HOM05D007073 ORTHO05D008855 2.1e-24 116.3 79 72.2
CDE08G0828 Ceratophyllum demersum HOM05D007073 ORTHO05D008855 2.8e-24 115.9 76 75.0
Lj4g0003370 Lotus japonicus HOM05D007073 ORTHO05D008855 2.8e-24 115.9 79 72.2
Manes.18G016450 Manihot esculenta HOM05D007073 ORTHO05D008855 2.8e-24 115.9 79 74.7
TPR.G24371 Trifolium pratense HOM05D007073 ORTHO05D008855 2.8e-24 115.9 79 73.4
Oeu054729.1 Olea europaea HOM05D007073 ORTHO05D008855 3.6e-24 115.5 87 67.8
ECA247G1834 Erigeron canadensis HOM05D007073 ORTHO05D008855 4.7e-24 115.2 72 79.2
Solyc04g081160.3 Solanum lycopersicum HOM05D007073 ORTHO05D008855 4.7e-24 115.2 79 73.4
Sopen04g034780 Solanum pennellii HOM05D007073 ORTHO05D008855 4.7e-24 115.2 79 73.4
PGSC0003DMG400003718 Solanum tuberosum HOM05D007073 ORTHO05D008855 4.7e-24 115.2 79 73.4
TAR628G0116 Trochodendron aralioides HOM05D007073 ORTHO05D008855 6.2e-24 114.8 73 75.3
Aa31LG6G9870 Aethionema arabicum HOM05D007073 ORTHO05D008855 8.0e-24 114.4 79 73.4
ClCG08G014440 Citrullus lanatus HOM05D007073 ORTHO05D008855 8.0e-24 114.4 73 78.1
Peaxi162Scf00287g01620 Petunia axillaris HOM05D007073 ORTHO05D008855 8.0e-24 114.4 79 70.9
Zm00001eb001980 Zea mays HOM05D007073 ORTHO05D008855 8.0e-24 114.4 85 67.1
Cc04_g14740 Coffea canephora HOM05D007073 ORTHO05D008855 1.0e-23 114.0 88 68.2
Migut.C00802 Erythranthe guttata HOM05D007073 ORTHO05D008855 1.0e-23 114.0 83 71.1
CsaV3_2G029360 Cucumis sativus L. HOM05D007073 ORTHO05D008855 1.4e-23 113.6 84 67.9
vmacro21707 Vaccinium macrocarpon HOM05D007073 ORTHO05D008855 1.4e-23 113.6 68 82.4
CARHR030330 Cardamine hirsuta HOM05D007073 ORTHO05D008855 1.8e-23 113.2 79 72.2
VMungo0251G2135 Vigna mungo HOM05D007073 ORTHO05D008855 1.8e-23 113.2 84 69.0
Thhalv10009135m.g Eutrema salsugineum HOM05D007073 ORTHO05D008855 2.3e-23 112.8 79 72.2
RcHm_v2.0_Chr6g0302381 Rosa chinensis HOM05D007073 ORTHO05D008855 2.3e-23 112.8 84 70.2
Sp1g26740 Schrenkiella parvula HOM05D007073 ORTHO05D008855 2.3e-23 112.8 79 72.2
Sed0011824 Sechium edule HOM05D007073 ORTHO05D008855 2.3e-23 112.8 73 76.7
Carub.0001s2918 Capsella rubella HOM05D007073 ORTHO05D008855 3.1e-23 112.5 79 72.2
CAN.G1271.5 Capsicum annuum HOM05D007073 ORTHO05D008855 3.1e-23 112.5 88 67.0
Lsat_1_v5_gn_1_16141 Lactuca sativa HOM05D007073 ORTHO05D008855 3.1e-23 112.5 72 77.8
MD08G1016500 Malus domestica HOM05D007073 ORTHO05D008855 3.1e-23 112.5 79 70.9
BcaC05g27117 Brassica carinata HOM05D007073 ORTHO05D008855 4.0e-23 112.1 88 67.0
BcaC05g27119 Brassica carinata HOM05D007073 ORTHO05D008855 4.0e-23 112.1 88 67.0
A09p35370 Brassica napus HOM05D007073 ORTHO05D008855 4.0e-23 112.1 79 70.9
C05p29970 Brassica napus HOM05D007073 ORTHO05D008855 4.0e-23 112.1 88 67.0
BolC5t31732H Brassica oleracea HOM05D007073 ORTHO05D008855 4.0e-23 112.1 88 67.0
BolC5t31736H Brassica oleracea HOM05D007073 ORTHO05D008855 4.0e-23 112.1 88 67.0
EL10Ac1g00450 Beta vulgaris HOM05D007073 ORTHO05D008855 6.8e-23 111.3 88 64.8
Medtr8g085700 Medicago truncatula HOM05D007073 ORTHO05D008855 6.8e-23 111.3 73 74.0
Ca_17949_v3 Cicer arietinum L. HOM05D007073 ORTHO05D008855 8.9e-23 110.9 73 74.0
SGA_v2.0_scaffold92G28275 Striga asiatica HOM05D007073 ORTHO05D008855 8.9e-23 110.9 83 68.7
Cc02_g29940 Coffea canephora HOM05D007073 ORTHO05D008855 1.2e-22 110.5 88 65.9
AL1G45120 Arabidopsis lyrata HOM05D007073 ORTHO05D008855 2.6e-22 109.4 74 73.0
AT1G30845 Arabidopsis thaliana HOM05D007073 ORTHO05D008855 2.6e-22 109.4 79 69.6
Glyma.05G155900 Glycine max HOM05D007073 ORTHO05D008855 2.6e-22 109.4 74 71.6
MD15G1015600 Malus domestica HOM05D007073 ORTHO05D008855 2.6e-22 109.4 79 69.6
Phvul.002G236200 Phaseolus vulgaris HOM05D007073 ORTHO05D008855 3.4e-22 109.0 84 66.7
Zm00001eb403590 Zea mays HOM05D007073 ORTHO05D008855 3.4e-22 109.0 79 69.6
Sc26g0003150 Simmondsia chinensis HOM05D007073 ORTHO05D008855 4.4e-22 108.6 79 65.8
BcaB07g32745 Brassica carinata HOM05D007073 ORTHO05D008855 7.5e-22 107.8 83 68.7
Lalb_Chr12g0205331 Lupinus albus HOM05D007073 ORTHO05D008855 1.7e-21 106.7 79 68.4
MSTRG.1215 Avicennia marina HOM05D007073 ORTHO05D008855 2.2e-21 106.3 67 76.1
MD13G1087600 Malus domestica HOM05D007073 ORTHO05D008855 2.9e-21 105.9 79 69.6
CANSAT11G0546 Cannabis sativa HOM05D007073 ORTHO05D008855 4.9e-21 105.1 71 76.1
HPP92_025607 Vanilla planifolia HOM05D007073 ORTHO05D008855 4.9e-21 105.1 88 65.9
Actinidia37317 Actinidia chinensis HOM05D007073 ORTHO05D008855 6.4e-21 104.8 68 76.5
CANSAT11G2499 Cannabis sativa HOM05D007073 ORTHO05D008855 2.4e-20 102.8 71 73.2
Rhsim06G0025500 Rhododendron simsii HOM05D000624 ORTHO05D000495 4.1e-20 102.1 59 84.7
SEGI_10735 Sequoiadendron giganteum HOM05D007073 ORTHO05D008855 1.2e-19 100.5 76 64.5
DCAR_017499 Daucus carota HOM05D007073 ORTHO05D008855 2.0e-19 99.8 64 78.1
ATR0945G003 Amborella trichopoda HOM05D007073 ORTHO05D008855 1.9e-17 93.2 66 68.2
C05p29960 Brassica napus HOM05D007073 ORTHO05D008855 5.6e-17 91.7 72 66.7
C05p30020 Brassica napus HOM05D007073 ORTHO05D008855 2.8e-16 89.4 74 63.5
BolC5t31739H Brassica oleracea HOM05D007073 ORTHO05D008855 4.7e-16 88.6 67 67.2
CiPaw.07G153100 Carya illinoinensis HOM05D007073 ORTHO05D008855 1.5e-14 83.6 60 68.3
Mapoly0121s0038 Marchantia polymorpha HOM05D007073 ORTHO05D008855 2.0e-14 83.2 76 52.6
Ciclev10002853m.g Citrus clementina HOM05D007073 ORTHO05D008855 9.8e-14 80.9 76 57.9
Gohir.A01G112900 Gossypium hirsutum HOM05D007073 ORTHO05D008855 1.3e-13 80.5 44 86.4
Gohir.D01G101000 Gossypium hirsutum HOM05D007073 ORTHO05D008855 1.3e-13 80.5 44 86.4
Cfa013916 Carpinus fangiana HOM05D007073 ORTHO05D008855 1.7e-13 80.1 51 72.5
Prupe.1G369500 Prunus persica HOM05D007073 ORTHO05D008855 1.7e-13 80.1 74 54.1
Actinidia26593 Actinidia chinensis HOM05D007073 ORTHO05D008855 2.9e-13 79.3 50 78.0
FAN13G2867 Fragaria x ananassa HOM05D007073 ORTHO05D008855 8.3e-13 77.8 60 66.7
AUR62014408 Chenopodium quinoa HOM05D007073 ORTHO05D008855 1.1e-12 77.4 57 70.2
Aqoxy6G02335_Aqoxy6G02336 Aquilegia oxysepala HOM05D000558 ORTHO05D001857 1.4e-12 77.0 41 87.8
Thecc.08G038900 Theobroma cacao HOM05D007073 ORTHO05D008855 1.4e-12 77.0 59 67.8
FAN18G2174 Fragaria x ananassa HOM05D007403 ORTHO05D009306 2.4e-12 76.3 56 67.9
Nitab4.5_0005185g0010 Nicotiana tabacum HOM05D007073 ORTHO05D008855 2.4e-12 76.3 51 72.5
MELO3C010995.2 Cucumis melo HOM05D007073 ORTHO05D008855 3.2e-12 75.9 46 76.1
FAN04G0335 Fragaria x ananassa HOM05D007403 ORTHO05D009306 5.4e-12 75.1 51 70.6
Os03g0127000 Oryza sativa ssp. japonica HOM05D007073 ORTHO05D008855 5.4e-12 75.1 48 72.9
Peaxi162Scf01591g00005 Petunia axillaris HOM05D007073 ORTHO05D008855 5.4e-12 75.1 51 70.6
Pp3c8_14860 Physcomitrium patens HOM05D007073 ORTHO05D008855 5.4e-12 75.1 64 57.8
AagrBONN_evm.TU.Sc2ySwM_344.4448 Anthoceros agrestis HOM05D007073 ORTHO05D008855 1.2e-11 73.9 78 47.4
arahy.Tifrunner.gnm1.ann1.JR36LC Arachis hypogaea HOM05D007073 ORTHO05D008855 1.6e-11 73.6 57 70.2
Eucgr.L01259 Eucalyptus grandis HOM05D007073 ORTHO05D008855 4.6e-11 72.0 44 79.5
Actinidia04603 Actinidia chinensis HOM05D007073 ORTHO05D008855 2.5e-09 66.2 42 78.6


User provided reference genes

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