Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00979 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.1e-58 229.9 128 100.0
Eucgr.H00993 Eucalyptus grandis HOM05D006975 ORTHO05D008736 8.5e-32 140.6 124 71.8
Eucgr.F00573 Eucalyptus grandis HOM05D006975 ORTHO05D008736 2.0e-28 129.4 90 88.9
CANSAT25G0709 Cannabis sativa HOM05D006975 ORTHO05D008736 3.5e-25 118.6 121 50.4
Atru.chr13.277_Atru.chr13.278 Acer truncatum HOM05D006975 ORTHO05D008736 5.9e-25 117.9 122 49.2
TAR536G0001 Trochodendron aralioides HOM05D006975 ORTHO05D008736 1.3e-24 116.7 123 48.0
Haze_04763 Corylus avellana HOM05D006975 ORTHO05D008736 2.2e-24 115.9 122 55.7
QL02p011816 Quercus lobata HOM05D006975 ORTHO05D008736 8.5e-24 114.0 122 54.1
Thecc.08G046000 Theobroma cacao HOM05D006975 ORTHO05D008736 8.5e-24 114.0 124 50.8
Cfa006087 Carpinus fangiana HOM05D006975 ORTHO05D008736 1.1e-23 113.6 122 61.5
Atru.chr13.275 Acer truncatum HOM05D006975 ORTHO05D008736 1.5e-23 113.2 122 46.7
Sopen04g035150 Solanum pennellii HOM05D006975 ORTHO05D008736 1.5e-23 113.2 122 45.9
Dinv39526 Davidia involucrata HOM05D006975 ORTHO05D008736 1.9e-23 112.8 122 47.5
Solyc04g081540.3 Solanum lycopersicum HOM05D006975 ORTHO05D008736 4.2e-23 111.7 122 45.1
Duzib093G1023 Durio zibethinus HOM05D006975 ORTHO05D008736 5.5e-23 111.3 123 57.7
Manes.05G146300 Manihot esculenta HOM05D006975 ORTHO05D008736 5.5e-23 111.3 123 47.2
PGSC0003DMG401009870 Solanum tuberosum HOM05D006975 ORTHO05D008736 5.5e-23 111.3 122 45.9
Prupe.1G364300 Prunus persica HOM05D006975 ORTHO05D008736 7.2e-23 110.9 122 51.6
TWI12G0084 Tripterygium wilfordii HOM05D006975 ORTHO05D008736 9.4e-23 110.5 122 50.8
CiPaw.08G066800 Carya illinoinensis HOM05D006975 ORTHO05D008736 1.2e-22 110.2 122 51.6
Nn1g05932 Nelumbo nucifera HOM05D006975 ORTHO05D008736 1.2e-22 110.2 122 49.2
Actinidia15428 Actinidia chinensis HOM05D006975 ORTHO05D008736 2.7e-22 109.0 122 45.1
CARHR231580 Cardamine hirsuta HOM05D006975 ORTHO05D008736 3.6e-22 108.6 125 57.6
Gohir.D01G097400 Gossypium hirsutum HOM05D006975 ORTHO05D008736 4.7e-22 108.2 123 57.7
Gorai.002G123100 Gossypium raimondii HOM05D006975 ORTHO05D008736 4.7e-22 108.2 123 57.7
Sp7g22140 Schrenkiella parvula HOM05D006975 ORTHO05D008736 4.7e-22 108.2 125 46.4
CSS0026180 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 1.0e-21 107.1 122 44.3
CSS0040454 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 1.0e-21 107.1 122 44.3
Gohir.A01G110800 Gossypium hirsutum HOM05D006975 ORTHO05D008736 1.0e-21 107.1 123 57.7
MD08G1012000 Malus domestica HOM05D006975 ORTHO05D008736 1.0e-21 107.1 122 47.5
Nitab4.5_0008000g0010 Nicotiana tabacum HOM05D006975 ORTHO05D008736 1.0e-21 107.1 122 54.1
Ciclev10001912m.g Citrus clementina HOM05D006975 ORTHO05D008736 1.4e-21 106.7 129 56.6
TPR.G2436 Trifolium pratense HOM05D006975 ORTHO05D008736 1.4e-21 106.7 124 49.2
AL7G29110 Arabidopsis lyrata HOM05D006975 ORTHO05D008736 1.8e-21 106.3 125 45.6
Thhalv10025797m.g Eutrema salsugineum HOM05D006975 ORTHO05D008736 1.8e-21 106.3 126 45.2
Potri.005G240800 Populus trichocarpa HOM05D006975 ORTHO05D008736 1.8e-21 106.3 122 45.1
AT4G24175 Arabidopsis thaliana HOM05D006975 ORTHO05D008736 2.3e-21 105.9 125 58.4
PGR031G2234 Punica granatum HOM05D006975 ORTHO05D008736 2.3e-21 105.9 122 58.2
Aa31sc424G20 Aethionema arabicum HOM05D006975 ORTHO05D008736 4.0e-21 105.1 129 51.2
Carub.0007s1692 Capsella rubella HOM05D006975 ORTHO05D008736 4.0e-21 105.1 126 54.8
BcaNung01123 Brassica carinata HOM05D006975 ORTHO05D008736 5.2e-21 104.8 125 45.6
BcaC09g50900 Brassica carinata HOM05D006975 ORTHO05D008736 6.7e-21 104.4 125 45.6
BolC1t01871H Brassica oleracea HOM05D006975 ORTHO05D008736 6.7e-21 104.4 125 45.6
BraA01t01489Z Brassica rapa HOM05D006975 ORTHO05D008736 6.7e-21 104.4 125 45.6
C01p19420 Brassica napus HOM05D006975 ORTHO05D008736 8.8e-21 104.0 125 45.6
MBI05_g19267_MAGBIO Magnolia biondii HOM05D006975 ORTHO05D008736 8.8e-21 104.0 123 43.9
Peaxi162Scf00553g00101 Petunia axillaris HOM05D006975 ORTHO05D008736 8.8e-21 104.0 122 51.6
Psat6g231560 Pisum sativum HOM05D006975 ORTHO05D008736 1.1e-20 103.6 122 52.5
Sed0023128 Sechium edule HOM05D006975 ORTHO05D008736 1.1e-20 103.6 122 59.8
GSVIVG01009926001 Vitis vinifera HOM05D006975 ORTHO05D008736 2.0e-20 102.8 124 54.0
Os04g0250700 Oryza sativa ssp. japonica HOM05D006975 ORTHO05D008736 3.3e-20 102.1 122 44.3
Hund05184 Selenicereus undatus HOM05D006975 ORTHO05D008736 3.3e-20 102.1 122 42.6
A01p15500 Brassica napus HOM05D006975 ORTHO05D008736 4.4e-20 101.7 143 42.7
Medtr1g112320 Medicago truncatula HOM05D006975 ORTHO05D008736 4.4e-20 101.7 123 45.5
THA.LOC104798667 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 4.4e-20 101.7 125 46.4
HanXRQChr05g0145201 Helianthus annuus HOM05D006975 ORTHO05D008736 7.4e-20 100.9 122 42.6
Sabra05G0186300 Salix brachista HOM05D006975 ORTHO05D008736 7.4e-20 100.9 122 45.1
COL.COLO4_26134 Corchorus olitorius HOM05D006975 ORTHO05D008736 9.7e-20 100.5 125 47.2
VMungo0720G0770 Vigna mungo HOM05D006975 ORTHO05D008736 1.3e-19 100.1 123 54.5
MSTRG.1185 Avicennia marina HOM05D006975 ORTHO05D008736 1.7e-19 99.8 122 43.4
Cpa.g.sc26.57 Carica papaya HOM05D006975 ORTHO05D008736 1.7e-19 99.8 122 45.9
ECA232G2413 Erigeron canadensis HOM05D006975 ORTHO05D008736 2.2e-19 99.4 122 41.0
Ca_11200_v3 Cicer arietinum L. HOM05D006975 ORTHO05D008736 4.8e-19 98.2 123 47.2
Lj4A797T59 Lonicera japonica HOM05D006975 ORTHO05D008736 4.8e-19 98.2 125 43.2
HPP92_004984 Vanilla planifolia HOM05D006975 ORTHO05D008736 4.8e-19 98.2 122 41.8
Aqoxy6G02228 Aquilegia oxysepala HOM05D006975 ORTHO05D008736 8.2e-19 97.4 122 48.4
EL10Ac1g02185 Beta vulgaris HOM05D006975 ORTHO05D008736 8.2e-19 97.4 124 42.7
Phvul.007G020200 Phaseolus vulgaris HOM05D006975 ORTHO05D008736 8.2e-19 97.4 123 43.9
arahy.Tifrunner.gnm1.ann1.Z9XT7U Arachis hypogaea HOM05D006975 ORTHO05D008736 1.1e-18 97.1 125 43.2
Glyma.20G108900 Glycine max HOM05D006975 ORTHO05D008736 1.1e-18 97.1 127 52.8
MD08G1011800 Malus domestica HOM05D006975 ORTHO05D008736 1.1e-18 97.1 121 42.1
arahy.Tifrunner.gnm1.ann1.Y91ZV9 Arachis hypogaea HOM05D006975 ORTHO05D008736 1.8e-18 96.3 125 42.4
Lj5g0003318 Lotus japonicus HOM05D006975 ORTHO05D008736 2.4e-18 95.9 122 46.7
Oeu027521.1 Olea europaea HOM05D006975 ORTHO05D008736 2.4e-18 95.9 123 52.8
Cc10_g01570 Coffea canephora HOM05D006975 ORTHO05D008736 3.1e-18 95.5 122 43.4
DCAR_021031 Daucus carota HOM05D006975 ORTHO05D008736 3.1e-18 95.5 122 39.3
Lsat_1_v5_gn_0_34641 Lactuca sativa HOM05D006975 ORTHO05D008736 3.1e-18 95.5 122 51.6
Lalb_Chr02g0143331 Lupinus albus HOM05D006975 ORTHO05D008736 3.1e-18 95.5 121 49.6
AUR62035015 Chenopodium quinoa HOM05D006975 ORTHO05D008736 4.1e-18 95.1 126 50.8
SGA_v2.0_scaffold11G05927 Striga asiatica HOM05D006975 ORTHO05D008736 4.1e-18 95.1 119 50.4
CDE04G0963 Ceratophyllum demersum HOM05D006975 ORTHO05D008736 5.3e-18 94.7 126 42.9
AUR62041899 Chenopodium quinoa HOM05D006975 ORTHO05D008736 5.3e-18 94.7 126 50.8
RcHm_v2.0_Chr6g0303031 Rosa chinensis HOM05D006975 ORTHO05D008736 1.6e-17 93.2 122 54.9
Sed0014296 Sechium edule HOM05D006975 ORTHO05D008736 2.0e-17 92.8 119 42.9
Zm00001eb086730 Zea mays HOM05D006975 ORTHO05D008736 3.5e-17 92.0 116 46.6
Hma1.2p1_0023F.1_g015550 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 7.7e-17 90.9 127 48.0
Migut.C00848 Erythranthe guttata HOM05D006975 ORTHO05D008736 1.7e-16 89.7 124 41.9
PSO541G1271 Papaver somniferum HOM05D006975 ORTHO05D008736 2.2e-16 89.4 122 47.5
CAN.G311.39 Capsicum annuum HOM05D006975 ORTHO05D008736 2.9e-16 89.0 164 34.8
PSO675G8288 Papaver somniferum HOM05D006975 ORTHO05D008736 2.9e-16 89.0 122 45.1
Eucgr.F00575 Eucalyptus grandis HOM05D006975 ORTHO05D008736 5.0e-16 88.2 70 67.1
FvH4_2g38330 Fragaria vesca HOM05D006975 ORTHO05D008736 6.5e-16 87.8 122 51.6
unitig_748.g7725 Utricularia gibba HOM05D006975 ORTHO05D008736 8.5e-16 87.4 122 41.0
ClCG05G018220 Citrullus lanatus HOM05D006975 ORTHO05D008736 1.5e-15 86.7 124 42.7
Rhsim06G0020700 Rhododendron simsii HOM05D006975 ORTHO05D008736 2.5e-15 85.9 150 35.3
FAN15G2275 Fragaria x ananassa HOM05D006975 ORTHO05D008736 4.2e-15 85.1 121 50.4
CsaV3_3G045930 Cucumis sativus L. HOM05D006975 ORTHO05D008736 9.4e-15 84.0 130 43.8
FAN27G0483 Fragaria x ananassa HOM05D006975 ORTHO05D008736 2.1e-14 82.8 122 49.2
MELO3C003746.2 Cucumis melo HOM05D006975 ORTHO05D008736 1.8e-13 79.7 124 45.2
FAN20G0256 Fragaria x ananassa HOM05D006975 ORTHO05D008736 1.8e-13 79.7 122 49.2
vmacro07578 Vaccinium macrocarpon HOM05D006975 ORTHO05D008736 4.4e-12 75.1 113 36.3
TAR381G1583 Trochodendron aralioides HOM05D006975 ORTHO05D008736 5.4e-10 68.2 98 50.0
Pp3c5_3830 Physcomitrium patens HOM05D006975 ORTHO05D008736 1.3e-08 63.5 124 36.3
CDE02G4250 Ceratophyllum demersum HOM05D000565 ORTHO05D004389 5.0e-08 61.6 65 50.8
Eucgr.H00986 Eucalyptus grandis HOM05D006975 ORTHO05D008736 8.5e-08 60.8 51 66.7
Eucgr.H00983 Eucalyptus grandis HOM05D006975 ORTHO05D008736 2.5e-07 59.3 34 79.4
SEGI_16371 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 7.2e-07 57.8 93 34.4


User provided reference genes

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