Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 1.2e-124 449.9 228 100.0
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 2.4e-77 292.7 165 85.5
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.1e-77 292.4 188 78.2
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 5.3e-77 291.6 226 69.0
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 6.9e-77 291.2 196 72.4
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 9.0e-77 290.8 154 87.7
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 9.0e-77 290.8 164 81.7
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 9.0e-77 290.8 226 69.9
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 1.2e-76 290.4 193 75.1
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 1.2e-76 290.4 234 67.9
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.5e-76 290.0 196 72.4
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 1.5e-76 290.0 168 82.1
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.5e-76 290.0 188 77.1
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 2.0e-76 289.7 227 68.3
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 5.9e-76 288.1 227 68.3
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 7.7e-76 287.7 224 68.8
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 1.7e-75 286.6 227 67.0
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 1.7e-75 286.6 188 76.6
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 1.7e-75 286.6 165 84.2
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 2.2e-75 286.2 164 84.8
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 2.9e-75 285.8 228 68.0
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 2.9e-75 285.8 227 67.0
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 2.9e-75 285.8 183 76.0
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 1.1e-74 283.9 165 81.8
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.4e-74 283.5 152 84.9
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 1.4e-74 283.5 200 70.5
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.4e-74 283.5 183 77.0
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 1.9e-74 283.1 166 83.1
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 3.2e-74 282.3 188 74.5
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 4.2e-74 282.0 227 67.4
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 7.2e-74 281.2 188 74.5
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 9.4e-74 280.8 231 66.2
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 2.1e-73 279.6 232 63.8
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 6.1e-73 278.1 167 82.0
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 7.9e-73 277.7 234 65.0
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.0e-72 277.3 165 80.6
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 3.0e-72 275.8 230 65.2
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 6.7e-72 274.6 225 65.3
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.1e-71 273.9 164 76.2
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 2.0e-71 273.1 230 64.3
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 2.5e-71 272.7 164 75.6
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 5.7e-71 271.6 163 77.9
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 7.4e-71 271.2 164 75.0
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.3e-70 270.4 145 84.8
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 2.8e-70 269.2 227 63.0
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 2.8e-70 269.2 151 84.8
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 2.8e-70 269.2 183 69.4
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 6.3e-70 268.1 187 71.7
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.1e-69 267.3 227 63.4
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 1.8e-69 266.5 178 70.8
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 4.1e-69 265.4 149 81.2
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 4.1e-69 265.4 193 67.9
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 5.3e-69 265.0 160 76.9
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 6.9e-69 264.6 205 68.3
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 2.0e-68 263.1 148 81.1
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 7.7e-68 261.2 188 70.2
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 7.7e-68 261.2 188 69.1
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.2e-67 259.6 162 74.7
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 2.2e-67 259.6 206 67.0
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.9e-67 259.2 171 71.9
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 3.8e-67 258.8 171 71.9
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 3.8e-67 258.8 215 62.3
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 5.0e-67 258.5 151 78.1
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 8.5e-67 257.7 178 70.2
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.5e-66 256.1 208 63.0
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 2.5e-66 256.1 207 62.8
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 3.2e-66 255.8 166 72.3
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 5.5e-66 255.0 203 68.5
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 7.2e-66 254.6 203 65.0
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 1.2e-65 253.8 143 83.2
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.6e-65 253.4 156 76.3
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.6e-65 253.4 190 67.9
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 3.6e-65 252.3 214 61.2
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 4.7e-65 251.9 187 66.8
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 7.9e-65 251.1 196 63.3
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 2.0e-63 246.5 214 66.8
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 2.0e-63 246.5 174 65.5
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 2.6e-63 246.1 164 74.4
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 5.7e-63 245.0 191 67.5
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 7.4e-63 244.6 137 81.8
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 7.4e-63 244.6 141 82.3
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 7.4e-63 244.6 177 67.2
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 9.7e-63 244.2 219 60.3
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 2.2e-62 243.0 208 65.4
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 1.8e-61 240.0 134 82.1
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 4.1e-61 238.8 224 59.4
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 5.9e-60 235.0 172 66.9
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.7e-59 233.4 162 74.7
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.1e-58 230.7 198 58.6
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.1e-58 230.7 199 59.3
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 1.5e-58 230.3 158 64.6
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 1.9e-58 229.9 189 58.2
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.2e-58 229.2 158 65.2
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.2e-58 229.2 158 65.2
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 4.2e-58 228.8 244 54.9
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 5.5e-58 228.4 185 61.1
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 1.2e-57 227.3 208 61.5
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 3.6e-57 225.7 113 86.7
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 3.6e-57 225.7 156 66.7
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 8.8e-56 221.1 260 49.2
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 1.1e-55 220.7 161 67.1
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 2.6e-55 219.5 162 63.0
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 2.6e-55 219.5 177 62.7
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 3.3e-55 219.2 191 53.4
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 9.7e-55 217.6 231 52.4
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 9.7e-55 217.6 189 63.5
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.3e-54 217.2 157 59.9
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 4.8e-54 215.3 159 60.4
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 3.1e-53 212.6 138 71.7
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 5.3e-53 211.8 164 61.0
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 5.3e-53 211.8 146 63.0
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 9.1e-53 211.1 108 85.2
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 2.6e-52 209.5 170 58.8
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 2.9e-51 206.1 138 68.1
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 3.8e-51 205.7 156 59.0
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.5e-50 203.0 145 58.6
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.2e-50 202.2 167 53.9
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.2e-49 200.7 226 46.9
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 3.6e-49 199.1 186 53.2
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 1.8e-48 196.8 145 56.6
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 1.8e-48 196.8 145 56.6
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 1.8e-48 196.8 221 53.4
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.0e-48 196.1 151 56.3
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 4.0e-48 195.7 129 73.6
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 8.8e-48 194.5 143 58.0
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 2.6e-47 193.0 145 55.2
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 2.6e-47 193.0 145 55.2
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 4.4e-47 192.2 167 50.9
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 4.4e-47 192.2 167 50.9
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 4.4e-47 192.2 110 85.5
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 7.5e-47 191.4 167 50.9
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 9.8e-47 191.0 108 79.6
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 6.3e-46 188.3 143 55.9
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 1.2e-44 184.1 97 83.5
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 6.5e-43 178.3 265 46.8
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 6.5e-43 178.3 136 58.1
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 4.2e-42 175.6 143 49.7
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 2.1e-41 173.3 227 47.6
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 2.7e-41 172.9 121 58.7
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 8.0e-41 171.4 135 62.2
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 7.5e-39 164.9 182 53.3
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.7e-36 156.4 175 50.3
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 5.9e-36 155.2 139 61.2
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 1.3e-35 154.1 119 52.9
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 1.1e-34 151.0 223 43.0
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 9.5e-34 147.9 142 58.5
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 1.6e-33 147.1 145 45.5
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 1.6e-33 147.1 158 54.4
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 2.8e-33 146.4 216 43.1
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 3.4e-31 139.4 171 49.1
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 4.4e-31 139.0 142 52.8
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 2.2e-30 136.7 137 43.1
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 8.3e-30 134.8 105 61.9
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 3.9e-27 125.9 65 87.7
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 5.6e-26 122.1 192 41.1
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 5.6e-26 122.1 140 41.4
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 4.7e-25 119.0 78 62.8
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 8.0e-25 118.2 165 46.7
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 8.9e-24 114.8 104 61.5
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 2.5e-18 96.7 56 82.1
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 7.3e-18 95.1 63 73.0
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 1.5e-15 87.4 85 54.1
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 1.4e-13 80.9 78 59.0
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 1.6e-12 77.4 67 55.2
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 5.1e-11 72.4 61 54.1
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 1.9e-10 70.5 59 54.2
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 1.9e-10 70.5 59 54.2
Pp3c15_19030 Physcomitrium patens HOM05D060542 ORTHO05D043949 3.1e-08 63.2 153 31.4
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 5.2e-08 62.4 82 45.1
CSS0034791 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.7e-06 57.4 58 58.6
CSS0043421 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.7e-06 57.4 58 58.6


User provided reference genes

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