Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 0.0e+00 1122.8 596 100.0
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 6.9e-294 1013.4 596 89.3
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 4.6e-290 1000.7 597 88.1
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 7.9e-290 1000.0 596 88.1
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 1.0e-289 999.6 598 89.0
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 1.0e-289 999.6 588 89.1
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 5.1e-289 997.3 596 85.6
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 3.3e-288 994.6 595 86.7
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 5.7e-288 993.8 596 86.4
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 7.4e-288 993.4 595 86.9
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 7.4e-288 993.4 596 85.7
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 3.7e-287 991.1 596 87.9
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 1.8e-286 988.8 598 87.6
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 4.1e-286 987.6 599 86.5
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 4.1e-286 987.6 596 86.7
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 3.4e-285 984.6 596 84.9
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 1.0e-284 983.0 596 85.6
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 1.0e-284 983.0 596 85.9
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 5.0e-284 980.7 596 84.1
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 6.1e-282 973.8 597 86.4
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 1.0e-281 973.0 596 85.6
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 3.7e-279 964.5 608 81.6
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 4.8e-279 964.1 596 85.1
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 4.8e-279 964.1 598 85.1
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 2.2e-276 955.3 598 83.9
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.9e-275 952.2 596 84.7
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.9e-275 952.2 596 84.7
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 2.5e-275 951.8 597 81.9
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 5.5e-275 950.7 596 83.1
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 7.2e-275 950.3 600 82.2
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 6.1e-274 947.2 600 82.0
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 7.9e-274 946.8 601 83.7
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 7.9e-274 946.8 600 82.0
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.8e-273 945.7 608 77.5
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 2.3e-273 945.3 598 82.3
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.9e-273 944.5 602 81.9
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 5.1e-273 944.1 608 77.3
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.5e-272 942.6 598 82.6
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 1.5e-272 942.6 606 80.9
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 7.4e-272 940.3 607 81.5
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 1.3e-271 939.5 600 83.3
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 1.7e-271 939.1 600 81.7
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 3.7e-271 937.9 602 81.9
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.7e-271 937.9 602 81.9
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 4.8e-271 937.6 590 82.0
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 8.2e-271 936.8 602 81.7
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.8e-270 935.6 600 81.5
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 1.8e-270 935.6 596 83.1
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 6.9e-270 933.7 596 82.7
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.3e-268 929.5 598 82.1
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 6.5e-268 927.2 598 80.6
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 4.2e-267 924.5 597 81.4
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 9.4e-267 923.3 597 82.2
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 1.2e-266 922.9 597 80.9
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 3.6e-266 921.4 596 80.7
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 3.9e-265 917.9 596 79.7
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 3.9e-265 917.9 596 80.2
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 8.8e-265 916.8 596 80.0
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.1e-264 916.4 596 79.7
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.6e-264 915.2 596 79.2
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 3.3e-264 914.8 602 79.6
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 4.4e-264 914.4 596 80.4
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 9.7e-264 913.3 596 79.2
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 4.8e-263 911.0 611 80.4
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 1.8e-262 909.1 597 79.6
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 9.1e-262 906.7 597 78.2
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 9.1e-262 906.7 597 78.2
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 9.1e-262 906.7 597 78.6
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.6e-261 906.0 608 78.0
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 2.0e-261 905.6 598 80.1
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 1.7e-260 902.5 597 79.1
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 1.7e-260 902.5 597 79.1
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 1.7e-260 902.5 597 79.1
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 2.2e-260 902.1 606 78.5
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 3.8e-260 901.4 600 79.3
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 1.5e-259 899.4 601 80.4
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 4.2e-259 897.9 601 78.9
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 7.2e-259 897.1 602 79.1
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 2.7e-258 895.2 595 78.5
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 4.7e-258 894.4 599 78.8
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 1.0e-257 893.3 597 78.1
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 8.8e-257 890.2 605 76.7
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 7.5e-256 887.1 597 77.6
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 9.7e-256 886.7 596 80.0
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 2.2e-255 885.6 616 77.1
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 2.8e-255 885.2 597 77.1
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 8.2e-255 883.6 604 78.1
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 8.2e-255 883.6 596 77.0
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 5.3e-254 880.9 598 79.6
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 7.0e-254 880.6 610 76.4
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 1.2e-253 879.8 596 77.7
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 3.5e-253 878.2 607 76.9
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 5.9e-253 877.5 595 75.5
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 3.8e-252 874.8 589 77.2
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 5.5e-251 870.9 595 76.8
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 1.2e-248 863.2 596 75.8
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 4.4e-248 861.3 605 75.9
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 8.3e-247 857.1 595 76.8
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 3.5e-245 851.7 597 73.9
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 7.7e-245 850.5 602 75.7
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 9.5e-243 843.6 597 73.2
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.8e-242 842.0 598 77.1
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 7.5e-240 833.9 601 74.4
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.1e-238 830.1 596 72.7
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 1.8e-238 829.3 548 78.8
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 2.0e-237 825.9 547 75.5
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 3.5e-237 825.1 645 70.7
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.3e-236 822.4 600 74.0
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 8.6e-236 820.5 609 73.6
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.2e-232 810.1 602 72.6
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 4.4e-232 808.1 597 73.9
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 8.3e-231 803.9 871 54.8
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 4.1e-230 801.6 596 74.2
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.1e-227 793.5 612 70.8
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 2.8e-226 788.9 612 69.8
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 2.9e-223 778.9 614 68.7
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 4.4e-216 755.0 596 69.5
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 1.7e-215 753.1 597 67.5
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 9.2e-214 747.3 566 70.0
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 7.6e-208 727.6 474 81.0
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.1e-189 666.4 598 63.5
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 6.4e-183 644.8 493 71.8
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 4.8e-170 602.1 520 67.1
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 9.1e-161 571.2 603 52.2
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 1.0e-159 567.8 603 51.9
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 8.2e-154 548.1 600 52.7
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 2.0e-147 526.9 600 55.0
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 2.0e-136 490.3 615 45.0
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 2.7e-128 463.4 584 46.7
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 8.6e-95 352.1 243 72.8
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 1.8e-92 344.4 209 79.9
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 1.3e-82 311.6 322 53.4
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 1.1e-78 298.5 624 35.3
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 1.5e-70 271.6 236 65.3
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.0e-67 261.2 215 67.0
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 1.2e-59 235.3 581 30.3
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 2.4e-52 211.1 148 73.0
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.0e-50 205.7 151 70.9
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.6e-35 154.5 201 46.3
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 2.7e-32 144.4 111 64.9
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 1.4e-31 142.1 624 23.7
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 1.3e-26 125.6 79 74.7
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 1.1e-25 122.5 79 73.4
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 9.4e-25 119.4 212 50.0
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.4e-23 115.5 78 70.5
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 1.7e-18 98.6 115 44.3
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.6e-14 84.7 59 72.9
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.8e-12 78.6 90 45.6
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 4.1e-12 77.4 96 45.8


User provided reference genes

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