Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00746 Eucalyptus grandis HOM05D007131 ORTHO05D009026 5.3e-122 441.0 223 100.0
Potri.002G248800 Populus trichocarpa HOM05D007131 ORTHO05D009026 1.0e-69 267.3 206 69.4
RcHm_v2.0_Chr6g0283441 Rosa chinensis HOM05D007131 ORTHO05D009026 2.3e-69 266.2 216 65.3
CiPaw.14G041500 Carya illinoinensis HOM05D007131 ORTHO05D009026 3.4e-68 262.3 215 65.6
Cfa010368 Carpinus fangiana HOM05D007131 ORTHO05D009026 5.7e-68 261.5 222 62.6
MD10G1154300 Malus domestica HOM05D007131 ORTHO05D009026 1.7e-67 260.0 222 65.3
Prupe.8G193200 Prunus persica HOM05D007131 ORTHO05D009026 2.2e-67 259.6 225 63.6
Sabra02G0189500 Salix brachista HOM05D007131 ORTHO05D009026 4.9e-67 258.5 217 64.5
Thecc.01G214300 Theobroma cacao HOM05D007131 ORTHO05D009026 8.3e-67 257.7 214 65.9
MELO3C015773.2 Cucumis melo HOM05D007131 ORTHO05D009026 2.4e-66 256.1 222 61.7
ClCG09G007600 Citrullus lanatus HOM05D007131 ORTHO05D009026 7.0e-66 254.6 228 61.0
FvH4_2g18050 Fragaria vesca HOM05D007131 ORTHO05D009026 7.0e-66 254.6 222 62.6
CsaV3_7G027510 Cucumis sativus L. HOM05D007131 ORTHO05D009026 1.2e-65 253.8 222 61.3
Haze_03320 Corylus avellana HOM05D007131 ORTHO05D009026 2.7e-65 252.7 236 61.0
FAN15G1265 Fragaria x ananassa HOM05D007131 ORTHO05D009026 2.7e-65 252.7 229 61.6
Dinv22999 Davidia involucrata HOM05D007131 ORTHO05D009026 7.8e-65 251.1 218 59.6
Sed0006902 Sechium edule HOM05D007131 ORTHO05D009026 1.9e-63 246.5 222 61.3
MD05G1165000 Malus domestica HOM05D007131 ORTHO05D009026 2.5e-63 246.1 222 61.3
Duzib138G1926 Durio zibethinus HOM05D007131 ORTHO05D009026 3.3e-63 245.7 209 64.1
Duzib211G0587 Durio zibethinus HOM05D007131 ORTHO05D009026 7.3e-63 244.6 210 64.3
TAR362G0782 Trochodendron aralioides HOM05D007131 ORTHO05D009026 2.8e-62 242.7 210 61.4
Ciclev10032761m.g Citrus clementina HOM05D007131 ORTHO05D009026 6.2e-62 241.5 225 60.9
Hma1.2p1_1492F.1_g286770 Hydrangea macrophylla HOM05D007131 ORTHO05D009026 6.2e-62 241.5 220 59.1
THA.LOC104818990 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 1.0e-61 240.7 206 62.1
CANSAT01G0405 Cannabis sativa HOM05D007131 ORTHO05D009026 1.8e-61 240.0 218 62.4
QL09p048363 Quercus lobata HOM05D007131 ORTHO05D009026 5.2e-61 238.4 203 62.6
AL8G21510 Arabidopsis lyrata HOM05D007131 ORTHO05D009026 8.9e-61 237.7 204 61.3
Carub.0008s0817 Capsella rubella HOM05D007131 ORTHO05D009026 1.2e-60 237.3 204 60.8
Actinidia23782 Actinidia chinensis HOM05D007131 ORTHO05D009026 2.6e-60 236.1 219 58.0
PSO675G2392 Papaver somniferum HOM05D007131 ORTHO05D009026 2.6e-60 236.1 209 56.0
PSO017G7069 Papaver somniferum HOM05D007131 ORTHO05D009026 3.4e-60 235.7 211 57.8
Gorai.007G158200 Gossypium raimondii HOM05D007131 ORTHO05D009026 4.4e-60 235.3 223 58.3
Actinidia09448 Actinidia chinensis HOM05D007131 ORTHO05D009026 9.8e-60 234.2 219 58.4
Gohir.A11G141300 Gossypium hirsutum HOM05D007131 ORTHO05D009026 9.8e-60 234.2 223 58.3
BcaC04g23770 Brassica carinata HOM05D007131 ORTHO05D009026 4.9e-59 231.9 205 59.0
C09p04870 Brassica napus HOM05D007131 ORTHO05D009026 4.9e-59 231.9 205 59.0
BcaB04g19580 Brassica carinata HOM05D007131 ORTHO05D009026 6.4e-59 231.5 214 57.5
SGA_v2.0_scaffold77G25283 Striga asiatica HOM05D007131 ORTHO05D009026 8.3e-59 231.1 216 57.4
THA.LOC104802654 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 8.3e-59 231.1 200 61.0
A06p39100 Brassica napus HOM05D007131 ORTHO05D009026 1.1e-58 230.7 204 60.3
Lalb_Chr13g0291041 Lupinus albus HOM05D007131 ORTHO05D009026 1.4e-58 230.3 215 55.8
arahy.Tifrunner.gnm1.ann1.4977NQ Arachis hypogaea HOM05D007131 ORTHO05D009026 4.1e-58 228.8 198 59.6
BcaC06g30783 Brassica carinata HOM05D007131 ORTHO05D009026 4.1e-58 228.8 204 58.3
DCAR_004756 Daucus carota HOM05D007131 ORTHO05D009026 4.1e-58 228.8 210 58.1
BolC7t44444H Brassica oleracea HOM05D007131 ORTHO05D009026 7.0e-58 228.0 204 59.3
Sp2g18910 Schrenkiella parvula HOM05D007131 ORTHO05D009026 7.0e-58 228.0 201 58.7
C07p39240 Brassica napus HOM05D007131 ORTHO05D009026 9.2e-58 227.6 204 57.8
MSTRG.12759 Avicennia marina HOM05D007131 ORTHO05D009026 1.2e-57 227.3 213 56.8
Medtr7g053220 Medicago truncatula HOM05D007131 ORTHO05D009026 1.2e-57 227.3 216 57.4
Rhsim01G0249500 Rhododendron simsii HOM05D007131 ORTHO05D009026 3.5e-57 225.7 225 53.8
BraA09t36091Z Brassica rapa HOM05D007131 ORTHO05D009026 4.6e-57 225.3 227 54.2
Nitab4.5_0000040g0390 Nicotiana tabacum HOM05D007131 ORTHO05D009026 6.0e-57 224.9 214 55.1
A09p04560 Brassica napus HOM05D007131 ORTHO05D009026 7.8e-57 224.6 227 54.2
Glyma.08G345600 Glycine max HOM05D007131 ORTHO05D009026 1.3e-56 223.8 218 56.0
Lj1g0012821 Lotus japonicus HOM05D007131 ORTHO05D009026 1.3e-56 223.8 224 55.4
BolC9t53415H Brassica oleracea HOM05D007131 ORTHO05D009026 3.0e-56 222.6 218 55.5
Migut.N00650 Erythranthe guttata HOM05D007131 ORTHO05D009026 3.0e-56 222.6 204 55.9
HanXRQChr08g0231751 Helianthus annuus HOM05D007131 ORTHO05D009026 3.0e-56 222.6 202 53.5
vmacro14706 Vaccinium macrocarpon HOM05D007131 ORTHO05D009026 3.0e-56 222.6 241 51.0
Sc24g0003400 Simmondsia chinensis HOM05D007131 ORTHO05D009026 1.5e-55 220.3 219 53.9
TPR.G26850 Trifolium pratense HOM05D007131 ORTHO05D009026 1.5e-55 220.3 216 55.1
Psat3g150760 Pisum sativum HOM05D007131 ORTHO05D009026 1.9e-55 219.9 216 57.4
EL10Ac7g17974 Beta vulgaris HOM05D007131 ORTHO05D009026 2.5e-55 219.5 221 54.8
Nitab4.5_0001471g0060 Nicotiana tabacum HOM05D007131 ORTHO05D009026 3.3e-55 219.2 217 54.4
Aqoxy2G04077 Aquilegia oxysepala HOM05D007131 ORTHO05D009026 9.5e-55 217.6 208 55.3
ECA247G2839 Erigeron canadensis HOM05D004243 ORTHO05D005018 1.2e-54 217.2 221 51.6
Lsat_1_v5_gn_9_17941 Lactuca sativa HOM05D007131 ORTHO05D009026 4.7e-54 215.3 197 56.9
Dinv28824 Davidia involucrata HOM05D007131 ORTHO05D009026 1.8e-53 213.4 134 73.9
CAN.G181.37 Capsicum annuum HOM05D007131 ORTHO05D009026 5.2e-53 211.8 168 62.5
PGSC0003DMG400020651 Solanum tuberosum HOM05D007131 ORTHO05D009026 6.8e-53 211.5 218 52.8
TWI36G0143 Tripterygium wilfordii HOM05D007131 ORTHO05D009026 6.8e-53 211.5 185 60.0
Peaxi162Scf01069g00214 Petunia axillaris HOM05D007131 ORTHO05D009026 1.2e-52 210.7 218 53.2
Cc01_g16360 Coffea canephora HOM05D007131 ORTHO05D009026 7.5e-52 208.0 154 65.6
Solyc06g007590.3 Solanum lycopersicum HOM05D007131 ORTHO05D009026 7.5e-52 208.0 218 51.8
ATR1149G002 Amborella trichopoda HOM05D007131 ORTHO05D009026 4.9e-51 205.3 201 55.2
HPP92_007612 Vanilla planifolia HOM05D007131 ORTHO05D009026 4.9e-51 205.3 215 52.1
Oeu064654.1 Olea europaea HOM05D007131 ORTHO05D009026 4.1e-50 202.2 182 56.6
Aa31sc517G10 Aethionema arabicum HOM05D007131 ORTHO05D009026 7.1e-50 201.4 258 46.1
unitig_37.g12881 Utricularia gibba HOM05D007131 ORTHO05D009026 1.6e-49 200.3 211 50.7
FAN27G0491 Fragaria x ananassa HOM05D007131 ORTHO05D009026 1.3e-48 197.2 247 49.8
FAN24G0325 Fragaria x ananassa HOM05D007131 ORTHO05D009026 1.7e-48 196.8 248 50.4
Atru.chr6.1589 Acer truncatum HOM05D007131 ORTHO05D009026 3.0e-48 196.1 219 53.4
Manes.12G051500 Manihot esculenta HOM05D007131 ORTHO05D009026 1.9e-47 193.4 196 56.6
Os12g0233300 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 5.6e-47 191.8 214 46.7
Nn1g09828 Nelumbo nucifera HOM05D007131 ORTHO05D009026 2.1e-46 189.9 144 63.9
Pp3c1_40870 Physcomitrium patens HOM05D007131 ORTHO05D009026 3.1e-45 186.0 138 64.5
CDE08G0780 Ceratophyllum demersum HOM05D007131 ORTHO05D009026 6.8e-45 184.9 178 58.4
AT5G48545 Arabidopsis thaliana HOM05D007131 ORTHO05D009026 1.5e-44 183.7 159 61.6
AagrBONN_evm.TU.Sc2ySwM_368.401 Anthoceros agrestis HOM05D007131 ORTHO05D009026 3.4e-44 182.6 140 57.9
VMungo1383G1151 Vigna mungo HOM05D007131 ORTHO05D009026 1.3e-43 180.6 217 49.3
SMO201G0137 Selaginella moellendorffii HOM05D007131 ORTHO05D009026 4.9e-43 178.7 118 64.4
Gohir.D11G147600 Gossypium hirsutum HOM05D007131 ORTHO05D009026 2.1e-41 173.3 159 58.5
CBR_g28074 Chara braunii HOM05D007131 ORTHO05D009026 1.9e-39 166.8 151 52.3
CBR_g41484 Chara braunii HOM05D007131 ORTHO05D009026 2.5e-39 166.4 145 55.2
SalBow3G2460 Salvia bowleyana HOM05D007131 ORTHO05D009026 4.0e-37 159.1 293 37.2
Phvul.008G134700 Phaseolus vulgaris HOM05D007131 ORTHO05D009026 5.8e-36 155.2 127 63.0
Sopen06g002490 Solanum pennellii HOM05D007131 ORTHO05D009026 1.7e-35 153.7 122 63.9
GSVIVG01002500001 Vitis vinifera HOM05D007131 ORTHO05D009026 4.6e-33 145.6 104 71.2
AUR62022148 Chenopodium quinoa HOM05D007131 ORTHO05D009026 1.1e-31 141.0 265 36.2
Thhalv10005043m.g Eutrema salsugineum HOM05D007131 ORTHO05D009026 8.1e-30 134.8 139 52.5
CARHR183470 Cardamine hirsuta HOM05D007131 ORTHO05D009026 9.3e-26 121.3 119 55.5
arahy.Tifrunner.gnm1.ann1.YI3R6M Arachis hypogaea HOM05D007131 ORTHO05D009026 6.0e-25 118.6 172 41.9
Lj2A1119T34 Lonicera japonica HOM05D007131 ORTHO05D009026 8.7e-24 114.8 123 52.8
CiPaw.14G045900 Carya illinoinensis HOM05D007131 ORTHO05D009026 3.6e-22 109.4 75 73.3
MCO06G116 Micromonas commoda HOM05D007131 ORTHO05D009026 9.0e-21 104.8 109 44.0
SEGI_25619 Sequoiadendron giganteum HOM05D007131 ORTHO05D009026 7.6e-20 101.7 84 59.5
QL09p048378 Quercus lobata HOM05D007131 ORTHO05D009026 3.8e-19 99.4 66 71.2
AUR62001177 Chenopodium quinoa HOM05D007131 ORTHO05D009026 1.4e-18 97.4 198 36.9
Cpa.g.sc8.95 Carica papaya HOM05D007131 ORTHO05D009026 1.0e-16 91.3 104 50.0
QL09p048788 Quercus lobata HOM05D002652 ORTHO05D002739 1.8e-13 80.5 112 42.0
Os11g0295000 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 1.2e-12 77.8 60 63.3
CBR_g50359 Chara braunii HOM05D002397 ORTHO05D002667 5.1e-08 62.4 105 30.5
DCAR_001310 Daucus carota HOM05D002397 ORTHO05D009673 6.7e-08 62.0 154 28.6
Sabra15G0139200 Salix brachista HOM05D002397 ORTHO05D002667 8.7e-08 61.6 135 28.9
Lj2A349T11 Lonicera japonica HOM05D002397 ORTHO05D002667 1.1e-07 61.2 104 31.7
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 1.9e-07 60.5 87 31.0
Lsat_1_v5_gn_2_62881 Lactuca sativa HOM05D002397 ORTHO05D002667 3.3e-07 59.7 104 30.8
Carub.0001s2956 Capsella rubella HOM05D002397 ORTHO05D002667 4.3e-07 59.3 106 34.0
Nitab4.5_0001288g0140 Nicotiana tabacum HOM05D002397 ORTHO05D002667 4.3e-07 59.3 102 32.4
Haze_26654 Corylus avellana HOM05D002397 ORTHO05D002667 7.4e-07 58.5 102 29.4
Solyc02g068700.3 Solanum lycopersicum HOM05D002397 ORTHO05D002667 7.4e-07 58.5 104 30.8
Sopen02g017870 Solanum pennellii HOM05D002397 ORTHO05D002667 7.4e-07 58.5 104 30.8
CANSAT35G0509 Cannabis sativa HOM05D002397 ORTHO05D002667 9.6e-07 58.2 107 31.8
CAN.G149.10 Capsicum annuum HOM05D002397 ORTHO05D002667 9.6e-07 58.2 104 29.8
Mapoly0066s0117 Marchantia polymorpha HOM05D002397 ORTHO05D002667 9.6e-07 58.2 105 28.6
Ca_18753_v3 Cicer arietinum L. HOM05D002397 ORTHO05D002667 1.3e-06 57.8 106 31.1
ECA238G1645 Erigeron canadensis HOM05D002397 ORTHO05D002667 1.3e-06 57.8 104 29.8
AagrBONN_evm.TU.Sc2ySwM_228.4317 Anthoceros agrestis HOM05D002397 ORTHO05D002667 2.1e-06 57.0 109 30.3
SEGI_32624 Sequoiadendron giganteum HOM05D002397 ORTHO05D002667 2.1e-06 57.0 130 27.7
vmacro03528 Vaccinium macrocarpon HOM05D002397 ORTHO05D002667 2.1e-06 57.0 101 30.7
Cc00_g11370 Coffea canephora HOM05D002397 ORTHO05D002667 2.8e-06 56.6 105 31.4
COL.COLO4_17651 Corchorus olitorius HOM05D002397 ORTHO05D002667 2.8e-06 56.6 104 28.8
PGR142G3425 Punica granatum HOM05D002397 ORTHO05D002667 2.8e-06 56.6 111 29.7
Hund19045 Selenicereus undatus HOM05D002397 ORTHO05D002667 3.7e-06 56.2 105 30.5
MD05G1250300 Malus domestica HOM05D002397 ORTHO05D002667 4.8e-06 55.8 104 28.8
Peaxi162Scf00149g00222 Petunia axillaris HOM05D002397 ORTHO05D002667 4.8e-06 55.8 104 28.8
Zm00001eb015330 Zea mays HOM05D002397 ORTHO05D002667 6.3e-06 55.5 105 27.6
ATR0307G077 Amborella trichopoda HOM05D002397 ORTHO05D002667 8.2e-06 55.1 101 29.7
AUR62018472 Chenopodium quinoa HOM05D002397 ORTHO05D002667 8.2e-06 55.1 101 30.7
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 8.2e-06 55.1 77 36.4
RcHm_v2.0_Chr3g0494981 Rosa chinensis HOM05D002397 ORTHO05D002667 8.2e-06 55.1 105 30.5


User provided reference genes

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