Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00678 Eucalyptus grandis HOM05D007796 ORTHO05D009853 1.0e-41 172.9 83 100.0
PGR083G0658 Punica granatum HOM05D007796 ORTHO05D009853 1.9e-24 115.5 66 83.3
Gohir.A07G088800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 1.4e-19 99.4 66 66.7
Gohir.D07G093800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 5.3e-19 97.4 66 65.2
Gorai.001G100500 Gossypium raimondii HOM05D007796 ORTHO05D009853 5.3e-19 97.4 66 65.2
Aa31LG5G18120 Aethionema arabicum HOM05D007796 ORTHO05D009853 1.3e-17 92.8 70 64.3
Atru.chr6.3486 Acer truncatum HOM05D007796 ORTHO05D009853 2.9e-17 91.7 58 69.0
Haze_03600 Corylus avellana HOM05D007796 ORTHO05D009853 3.8e-17 91.3 61 63.9
THA.LOC104822455 Tarenaya hassleriana HOM05D007796 ORTHO05D009853 5.0e-17 90.9 68 63.2
A05p40630 Brassica napus HOM05D007796 ORTHO05D009853 1.1e-16 89.7 69 60.9
BraA05t22794Z Brassica rapa HOM05D007796 ORTHO05D009853 1.1e-16 89.7 69 60.9
QL09p048026 Quercus lobata HOM05D007796 ORTHO05D009853 1.1e-16 89.7 66 63.6
BcaC05g29552 Brassica carinata HOM05D000328 ORTHO05D000191 1.5e-16 89.4 67 59.7
C05p59740 Brassica napus HOM05D007796 ORTHO05D009853 1.5e-16 89.4 67 59.7
BolC5t34628H Brassica oleracea HOM05D007796 ORTHO05D009853 1.5e-16 89.4 67 59.7
CARHR082260 Cardamine hirsuta HOM05D007796 ORTHO05D009853 1.9e-16 89.0 66 62.1
Ciclev10018341m.g Citrus clementina HOM05D007796 ORTHO05D009853 1.9e-16 89.0 55 74.5
Thhalv10021850m.g Eutrema salsugineum HOM05D007796 ORTHO05D009853 1.9e-16 89.0 66 62.1
Cfa010674 Carpinus fangiana HOM05D005998 ORTHO05D007664 2.5e-16 88.6 65 61.5
Prupe.1G064700 Prunus persica HOM05D007796 ORTHO05D009853 2.5e-16 88.6 66 69.7
Sp3g06500 Schrenkiella parvula HOM05D007796 ORTHO05D009853 3.2e-16 88.2 66 62.1
Manes.12G058902 Manihot esculenta HOM05D007796 ORTHO05D009853 4.2e-16 87.8 66 59.1
AL3G18920 Arabidopsis lyrata HOM05D007796 ORTHO05D009853 5.5e-16 87.4 66 62.1
COL.COLO4_04515 Corchorus olitorius HOM05D007796 ORTHO05D009853 5.5e-16 87.4 66 59.1
MD16G1238500 Malus domestica HOM05D007796 ORTHO05D009853 5.5e-16 87.4 68 63.2
Thecc.01G204800 Theobroma cacao HOM05D007796 ORTHO05D009853 5.5e-16 87.4 66 59.1
AT3G07568 Arabidopsis thaliana HOM05D007796 ORTHO05D009853 1.2e-15 86.3 66 60.6
Carub.0003s0713 Capsella rubella HOM05D007796 ORTHO05D009853 1.2e-15 86.3 66 59.1
MD13G1233500 Malus domestica HOM05D007796 ORTHO05D009853 2.7e-15 85.1 68 60.3
CiPaw.13G057300 Carya illinoinensis HOM05D007796 ORTHO05D009853 4.7e-15 84.3 68 60.3
Nn7g37568 Nelumbo nucifera HOM05D007796 ORTHO05D009853 8.0e-15 83.6 62 62.9
MSTRG.9748 Avicennia marina HOM05D007796 ORTHO05D009853 1.0e-14 83.2 67 55.2
CANSAT35G1173 Cannabis sativa HOM05D007796 ORTHO05D009853 4.0e-14 81.3 61 62.3
TPR.G5064 Trifolium pratense HOM05D007796 ORTHO05D009853 6.8e-14 80.5 55 61.8
TWI36G1414 Tripterygium wilfordii HOM05D007796 ORTHO05D009853 6.8e-14 80.5 61 59.0
Medtr8g028085 Medicago truncatula HOM05D007796 ORTHO05D009853 2.0e-13 79.0 55 61.8
MELO3C012717.2 Cucumis melo HOM05D007796 ORTHO05D009853 2.6e-13 78.6 61 63.9
Lj3g0021991 Lotus japonicus HOM05D007796 ORTHO05D009853 2.6e-13 78.6 55 61.8
FAN07G1080 Fragaria x ananassa HOM05D007796 ORTHO05D009853 3.4e-13 78.2 66 56.1
CSS0002213 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 4.4e-13 77.8 65 53.8
CSS0009025 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 4.4e-13 77.8 65 53.8
Manes.13G057800 Manihot esculenta HOM05D007796 ORTHO05D009853 4.4e-13 77.8 66 54.5
Psat4g158920 Pisum sativum HOM05D007796 ORTHO05D009853 4.4e-13 77.8 55 58.2
Migut.G01293 Erythranthe guttata HOM05D007796 ORTHO05D009853 5.7e-13 77.4 65 53.8
FvH4_4g06110 Fragaria vesca HOM05D007796 ORTHO05D009853 7.5e-13 77.0 54 66.7
FAN12G2913 Fragaria x ananassa HOM05D007796 ORTHO05D009853 7.5e-13 77.0 54 66.7
FAN17G0402 Fragaria x ananassa HOM05D007796 ORTHO05D009853 7.5e-13 77.0 54 66.7
FAN22G0383 Fragaria x ananassa HOM05D007796 ORTHO05D009853 9.8e-13 76.6 65 55.4
Rhsim09G0018700 Rhododendron simsii HOM05D007796 ORTHO05D009853 9.8e-13 76.6 65 50.8
RcHm_v2.0_Chr4g0397691 Rosa chinensis HOM05D007796 ORTHO05D009853 9.8e-13 76.6 65 58.5
SalBow2G2954 Salvia bowleyana HOM05D007796 ORTHO05D009853 1.7e-12 75.9 65 52.3
arahy.Tifrunner.gnm1.ann1.M2QILT Arachis hypogaea HOM05D007796 ORTHO05D009853 2.2e-12 75.5 58 58.6
Hma1.2p1_0487F.1_g163590 Hydrangea macrophylla HOM05D007796 ORTHO05D009853 2.8e-12 75.1 66 53.0
Cpa.g.sc8.20 Carica papaya HOM05D007796 ORTHO05D009853 3.7e-12 74.7 57 66.7
Rhsim09G0019700 Rhododendron simsii HOM05D007796 ORTHO05D009853 3.7e-12 74.7 65 49.2
Actinidia27090 Actinidia chinensis HOM05D007796 ORTHO05D009853 4.8e-12 74.3 61 55.7
Ca_23572_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 4.8e-12 74.3 55 60.0
Ca_23581_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 4.8e-12 74.3 55 60.0
Lsat_1_v5_gn_2_38801 Lactuca sativa HOM05D007796 ORTHO05D009853 6.3e-12 73.9 56 58.9
Oeu022686.1 Olea europaea HOM05D007796 ORTHO05D009853 6.3e-12 73.9 82 43.9
vmacro00674 Vaccinium macrocarpon HOM05D007796 ORTHO05D009853 8.3e-12 73.6 63 49.2
PSO017G5834 Papaver somniferum HOM05D007796 ORTHO05D009853 1.1e-11 73.2 56 62.5
Rhsim09G0019400 Rhododendron simsii HOM05D007796 ORTHO05D009853 1.1e-11 73.2 63 49.2
Potri.014G197400 Populus trichocarpa HOM05D007796 ORTHO05D009853 1.4e-11 72.8 67 53.7
CsaV3_7G027090 Cucumis sativus L. HOM05D007796 ORTHO05D009853 3.1e-11 71.6 93 50.5
Lalb_Chr17g0342271 Lupinus albus HOM05D007796 ORTHO05D009853 5.4e-11 70.9 55 54.5
CiPaw.14G044700 Carya illinoinensis HOM05D007796 ORTHO05D009853 4.5e-10 67.8 64 54.7
Nitab4.5_0000242g0120 Nicotiana tabacum HOM05D007796 ORTHO05D009853 1.3e-09 66.2 59 47.5
DCAR_005469 Daucus carota HOM05D007796 ORTHO05D009853 1.7e-09 65.9 65 49.2
Nitab4.5_0012444g0010 Nicotiana tabacum HOM05D007796 ORTHO05D009853 2.2e-09 65.5 59 45.8
unitig_0.g2392 Utricularia gibba HOM05D007796 ORTHO05D009853 2.2e-09 65.5 67 37.3
ATR0743G114 Amborella trichopoda HOM05D007796 ORTHO05D009853 2.9e-09 65.1 62 50.0
Nitab4.5_0001521g0060 Nicotiana tabacum HOM05D007796 ORTHO05D009853 3.8e-09 64.7 59 45.8
Glyma.07G059400 Glycine max HOM05D007796 ORTHO05D009853 6.5e-09 63.9 63 49.2
Sed0024779 Sechium edule HOM05D007796 ORTHO05D009853 6.5e-09 63.9 58 58.6
Sopen08g004900 Solanum pennellii HOM05D007796 ORTHO05D009853 6.5e-09 63.9 55 49.1
AUR62023828 Chenopodium quinoa HOM05D007796 ORTHO05D009853 8.5e-09 63.5 57 56.1
MBI07_g07943_MAGBIO Magnolia biondii HOM05D007796 ORTHO05D009853 1.9e-08 62.4 77 45.5
AUR62002357 Chenopodium quinoa HOM05D007796 ORTHO05D009853 2.5e-08 62.0 57 56.1
EL10Ac3g06021 Beta vulgaris HOM05D007796 ORTHO05D009853 4.2e-08 61.2 56 51.8
GSVIVG01004106001 Vitis vinifera HOM05D007796 ORTHO05D009853 4.2e-08 61.2 61 47.5
HanXRQChr12g0382011 Helianthus annuus HOM05D007796 ORTHO05D009853 1.2e-07 59.7 60 46.7
Phvul.010G110050 Phaseolus vulgaris HOM05D007796 ORTHO05D009853 2.7e-07 58.5 67 49.3
SHI10202 Sapria himalayana HOM05D007796 ORTHO05D009853 4.7e-07 57.8 39 64.1
Glyma.16G028300 Glycine max HOM05D007796 ORTHO05D009853 1.8e-06 55.8 65 47.7
Peaxi162Scf00075g01546 Petunia axillaris HOM05D007796 ORTHO05D009853 1.8e-06 55.8 65 40.0
Phvul.010G110100 Phaseolus vulgaris HOM05D007796 ORTHO05D009853 3.0e-06 55.1 67 46.3


User provided reference genes

Program Settings