Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 3.8e-103 378.3 199 100.0
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 2.2e-79 299.3 205 80.0
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 1.9e-78 296.2 202 80.2
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 3.2e-78 295.4 199 80.4
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 1.3e-76 290.0 202 76.2
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 3.0e-76 288.9 202 76.2
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 1.6e-74 283.1 198 77.8
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 2.1e-74 282.7 210 74.8
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 3.7e-74 282.0 222 72.5
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 3.7e-74 282.0 230 69.1
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 6.3e-74 281.2 198 76.8
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 1.1e-73 280.4 205 78.0
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.4e-73 280.0 163 93.9
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 4.1e-73 278.5 203 77.3
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 9.0e-73 277.3 202 76.7
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 1.5e-72 276.6 214 73.4
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 1.3e-71 273.5 207 73.9
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 2.2e-71 272.7 159 93.1
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 5.0e-71 271.6 203 74.4
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 1.9e-70 269.6 219 69.9
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 7.2e-70 267.7 203 71.4
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.2e-69 266.9 199 74.9
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 1.6e-69 266.5 203 73.4
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 1.6e-69 266.5 203 73.4
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 4.6e-69 265.0 205 73.7
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 1.3e-68 263.5 209 73.7
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 1.8e-68 263.1 223 67.7
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 1.8e-68 263.1 198 72.7
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 3.0e-68 262.3 207 71.5
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 6.7e-68 261.2 220 68.6
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 8.7e-68 260.8 226 67.7
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 3.3e-67 258.8 213 68.1
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 5.7e-67 258.1 226 68.6
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 1.3e-66 256.9 201 71.1
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 2.2e-66 256.1 206 72.3
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 4.8e-66 255.0 220 69.5
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 1.2e-64 250.4 206 69.9
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 1.0e-63 247.3 241 64.3
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 1.3e-63 246.9 219 66.7
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 2.2e-63 246.1 216 69.0
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 5.0e-63 245.0 222 66.7
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 6.5e-63 244.6 210 69.0
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 1.4e-62 243.4 223 65.0
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 1.9e-62 243.0 143 88.1
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 3.2e-62 242.3 214 68.7
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 9.4e-62 240.7 212 65.1
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 9.4e-62 240.7 230 62.6
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 1.6e-61 240.0 220 64.5
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 4.6e-61 238.4 215 66.5
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 1.8e-60 236.5 252 59.1
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 1.8e-60 236.5 199 69.3
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 3.9e-60 235.3 268 56.0
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 3.9e-60 235.3 237 59.9
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 5.1e-60 235.0 202 66.8
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 5.1e-60 235.0 205 65.4
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 1.5e-59 233.4 223 62.8
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.6e-59 232.6 205 65.9
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 8.2e-58 227.6 207 65.2
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 1.4e-57 226.9 259 55.6
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 2.6e-56 222.6 203 65.5
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 1.7e-55 219.9 218 60.1
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 1.1e-54 217.2 199 60.3
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 5.5e-54 214.9 162 77.8
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 1.6e-53 213.4 202 60.4
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 1.0e-52 210.7 210 61.9
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 1.4e-52 210.3 170 71.8
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 3.7e-50 202.2 164 72.0
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 3.7e-50 202.2 201 60.2
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 2.4e-49 199.5 159 71.1
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 5.3e-49 198.4 202 59.9
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 2.6e-48 196.1 173 67.1
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 4.5e-48 195.3 209 56.9
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 2.2e-47 193.0 180 63.3
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 5.0e-47 191.8 171 64.9
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 6.5e-47 191.4 201 57.7
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 2.3e-44 183.0 92 98.9
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 3.0e-44 182.6 92 97.8
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 3.0e-44 182.6 92 97.8
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 4.0e-44 182.2 92 96.7
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 6.7e-44 181.4 92 96.7
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 6.7e-44 181.4 114 81.6
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 1.5e-43 180.3 97 92.8
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 1.5e-43 180.3 180 64.4
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 2.0e-43 179.9 172 65.1
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 2.0e-43 179.9 92 97.8
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 1.3e-42 177.2 92 96.7
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 3.7e-42 175.6 218 53.7
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 3.7e-42 175.6 92 95.7
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 1.1e-41 174.1 93 94.6
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 9.1e-41 171.0 266 45.5
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 3.5e-40 169.1 271 44.6
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 1.5e-38 163.7 92 90.2
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 1.5e-38 163.7 92 90.2
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 7.2e-38 161.4 165 58.8
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 1.2e-37 160.6 95 92.6
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 5.2e-36 155.2 125 63.2
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 5.2e-36 155.2 206 50.5
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 3.4e-35 152.5 222 47.3
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 6.3e-34 148.3 238 47.5
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 6.3e-34 148.3 199 47.7
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 9.1e-33 144.4 182 55.5
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 5.0e-31 138.7 286 40.9
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 6.5e-31 138.3 309 38.2
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 2.8e-29 132.9 207 46.9
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 4.0e-28 129.0 100 73.0
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 6.8e-28 128.3 107 70.1
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 1.7e-26 123.6 144 61.1
MD06G1000100 Malus domestica HOM05D005752 ORTHO05D006959 5.4e-25 118.6 63 90.5
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 1.0e-23 114.4 169 47.9
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 1.3e-23 114.0 156 49.4
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 3.8e-23 112.5 281 35.9
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 6.6e-23 111.7 201 40.8
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 1.6e-21 107.1 176 42.0
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 1.0e-20 104.4 157 49.0
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 4.4e-19 99.0 52 94.2
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 3.7e-18 95.9 119 51.3
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 3.7e-18 95.9 115 54.8
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 4.6e-16 89.0 159 42.1
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 4.6e-16 89.0 159 42.1
GSVIVG01024241001 Vitis vinifera HOM05D005752 ORTHO05D006959 8.6e-15 84.7 40 97.5
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 4.7e-13 79.0 106 53.8
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 8.0e-13 78.2 54 75.9
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 1.1e-12 77.8 169 35.5
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 6.8e-12 75.1 135 45.2
AL2G33130 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 4.4e-11 72.4 41 87.8
Sopen06g028430 Solanum pennellii HOM05D005752 ORTHO05D006959 9.8e-11 71.2 106 46.2
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 1.2e-08 64.3 42 81.0
SGA_v2.0_scaffold21G09651 Striga asiatica HOM05D005752 ORTHO05D006959 3.5e-08 62.8 40 75.0
SGA_v2.0_scaffold25G10718 Striga asiatica HOM05D005752 ORTHO05D006959 6.0e-08 62.0 118 38.1
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.3e-07 60.8 35 88.6
CsaV3_1G005260 Cucumis sativus L. HOM05D005752 ORTHO05D006959 3.0e-07 59.7 81 50.6


User provided reference genes

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