Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 3.2e-153 545.0 277 100.0
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 9.6e-97 357.5 301 62.1
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 2.1e-96 356.3 274 67.2
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 2.8e-96 355.9 302 61.6
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 2.8e-96 355.9 298 62.1
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 8.1e-96 354.4 302 60.9
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.1e-95 354.0 302 61.3
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.1e-95 354.0 302 61.9
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 1.1e-95 354.0 302 62.3
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 1.4e-95 353.6 302 61.9
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 3.1e-95 352.4 302 61.6
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 4.0e-95 352.1 302 61.9
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 4.0e-95 352.1 298 62.1
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 4.0e-95 352.1 298 62.1
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 5.2e-95 351.7 302 61.3
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 5.2e-95 351.7 302 61.6
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 5.2e-95 351.7 302 61.9
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 6.8e-95 351.3 302 61.6
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 6.8e-95 351.3 302 61.3
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 8.9e-95 350.9 302 61.3
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 1.2e-94 350.5 302 61.6
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.2e-94 350.5 302 62.3
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 2.0e-94 349.7 302 61.9
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 2.0e-94 349.7 302 60.9
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 2.0e-94 349.7 297 62.3
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 2.6e-94 349.4 302 61.3
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 2.6e-94 349.4 302 61.3
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 2.6e-94 349.4 302 61.6
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 2.6e-94 349.4 302 61.6
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 3.4e-94 349.0 302 61.3
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 4.4e-94 348.6 298 60.4
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 4.4e-94 348.6 302 60.6
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 4.4e-94 348.6 302 60.9
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 5.8e-94 348.2 302 61.6
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 5.8e-94 348.2 302 61.6
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 7.6e-94 347.8 302 61.3
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 7.6e-94 347.8 302 60.6
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 7.6e-94 347.8 302 60.6
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 9.9e-94 347.4 302 61.3
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 9.9e-94 347.4 302 61.6
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 1.3e-93 347.1 297 60.6
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 1.3e-93 347.1 302 61.9
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 1.3e-93 347.1 302 61.9
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 1.3e-93 347.1 302 60.6
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 1.7e-93 346.7 302 60.6
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.7e-93 346.7 301 60.5
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 1.7e-93 346.7 302 60.9
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 1.7e-93 346.7 302 59.9
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.7e-93 346.7 302 61.6
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 2.2e-93 346.3 297 60.9
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 2.9e-93 345.9 302 60.6
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.9e-93 345.9 302 60.3
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 2.9e-93 345.9 302 61.3
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 3.8e-93 345.5 302 59.9
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 3.8e-93 345.5 302 60.3
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 3.8e-93 345.5 302 59.6
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 3.8e-93 345.5 302 61.6
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 4.9e-93 345.1 302 60.9
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 6.4e-93 344.7 302 60.3
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 6.4e-93 344.7 298 62.1
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 6.4e-93 344.7 302 60.3
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 8.4e-93 344.4 302 60.6
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 8.4e-93 344.4 302 60.9
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 1.1e-92 344.0 302 60.9
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 1.1e-92 344.0 302 59.9
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.4e-92 343.6 302 60.6
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 1.9e-92 343.2 302 59.9
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 2.4e-92 342.8 302 60.3
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 2.4e-92 342.8 302 60.3
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 2.4e-92 342.8 302 60.3
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 2.4e-92 342.8 302 60.3
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 3.2e-92 342.4 302 60.6
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 3.2e-92 342.4 302 59.3
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 3.2e-92 342.4 302 59.3
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 3.2e-92 342.4 297 60.3
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 3.2e-92 342.4 297 60.6
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 4.2e-92 342.0 302 60.9
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 4.2e-92 342.0 302 60.9
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 5.4e-92 341.7 302 58.9
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 5.4e-92 341.7 298 60.7
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 5.4e-92 341.7 302 60.3
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 7.1e-92 341.3 302 60.6
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 7.1e-92 341.3 302 59.6
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 9.3e-92 340.9 301 60.1
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 9.3e-92 340.9 297 60.6
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 1.2e-91 340.5 302 59.6
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 1.2e-91 340.5 302 59.3
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 1.6e-91 340.1 302 58.9
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 1.6e-91 340.1 302 58.9
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.6e-91 340.1 302 59.6
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 1.6e-91 340.1 302 60.3
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 2.7e-91 339.3 290 62.4
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 2.7e-91 339.3 302 59.3
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 3.5e-91 339.0 302 60.3
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 6.0e-91 338.2 302 58.9
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 6.0e-91 338.2 299 58.9
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 6.0e-91 338.2 302 58.6
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 7.8e-91 337.8 302 58.9
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 7.8e-91 337.8 302 59.3
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 7.8e-91 337.8 302 59.3
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 7.8e-91 337.8 302 58.9
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 1.3e-90 337.0 302 59.6
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 1.3e-90 337.0 297 59.3
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 1.7e-90 336.7 302 58.9
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 1.7e-90 336.7 302 58.9
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 1.7e-90 336.7 302 59.3
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 2.3e-90 336.3 297 59.9
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 3.0e-90 335.9 302 58.9
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 3.0e-90 335.9 302 58.6
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 3.0e-90 335.9 298 59.1
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 5.1e-90 335.1 303 57.8
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 6.6e-90 334.7 295 60.7
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 1.1e-89 334.0 302 57.9
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 1.1e-89 334.0 302 57.9
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.5e-89 333.6 298 59.7
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 2.5e-89 332.8 298 58.7
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 4.3e-89 332.0 300 58.3
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 9.6e-89 330.9 298 56.7
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 1.3e-88 330.5 302 57.6
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 1.6e-88 330.1 302 57.6
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 2.1e-88 329.7 301 56.5
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 8.1e-88 327.8 324 55.6
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 1.1e-87 327.4 302 57.0
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 1.1e-87 327.4 302 57.0
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 3.1e-87 325.9 274 63.5
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 1.5e-86 323.6 302 55.6
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 2.6e-86 322.8 298 57.7
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 1.9e-84 316.6 298 55.0
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 5.4e-84 315.1 302 55.0
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 4.6e-83 312.0 229 69.0
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 3.0e-82 309.3 298 55.7
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.1e-81 307.4 229 68.1
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 1.9e-81 306.6 272 58.5
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 2.5e-81 306.2 303 53.5
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 4.3e-81 305.4 229 67.7
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.6e-80 303.5 298 54.0
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 2.8e-80 302.8 255 60.8
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 6.2e-80 301.6 299 54.2
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 6.9e-79 298.1 302 53.3
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 1.2e-78 297.4 302 54.6
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 3.4e-78 295.8 304 51.6
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.9e-76 290.0 298 53.4
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.2e-75 287.3 304 50.7
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.2e-75 287.3 304 50.7
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 1.0e-61 241.1 221 59.7
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 2.2e-61 240.0 278 47.5
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 3.7e-56 222.6 158 70.3
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.7e-53 213.8 269 42.0
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 9.1e-47 191.4 301 42.2
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 9.1e-47 191.4 180 56.7
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.4e-44 184.1 127 71.7
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.3e-29 134.4 157 47.1
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 3.6e-27 126.3 134 51.5
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 1.0e-26 124.8 114 57.9
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 2.2e-24 117.1 80 68.8
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 3.1e-23 113.2 102 56.9
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 9.5e-20 101.7 62 72.6
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.7e-14 83.6 84 53.6
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 2.3e-13 80.5 62 56.5


User provided reference genes

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