Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 2296.5 1179 100.0
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1434.5 1186 64.8
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1419.4 1178 64.3
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1408.3 1159 64.4
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1371.7 1176 63.5
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1370.1 1166 63.1
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1357.8 1175 63.7
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1357.8 1160 63.0
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1354.3 1165 62.8
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1354.0 1165 62.7
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1354.0 1194 62.0
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1352.4 1163 62.9
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1351.7 1172 62.9
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1350.5 1155 63.5
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1344.3 1151 63.1
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1338.9 1195 60.5
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1333.9 1161 63.4
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1328.9 1175 61.1
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1323.5 1171 60.9
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1316.6 1176 60.4
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1313.9 1160 61.6
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1311.2 1230 58.1
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1310.4 1182 60.7
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1308.5 1040 63.7
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 1308.5 1170 60.2
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1306.6 1153 59.8
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1306.2 1189 58.2
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 1305.4 1172 60.1
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1302.0 1172 60.6
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1301.2 1167 60.2
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1301.2 1171 60.4
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1300.0 1169 60.5
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1298.1 1172 59.3
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1284.6 1165 60.1
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1283.9 1175 59.1
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1283.1 1038 62.9
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1280.0 1177 59.2
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1278.1 1173 59.0
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1278.1 1177 59.0
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1276.5 1158 61.0
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1273.1 1172 60.3
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1260.4 1221 57.7
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1255.4 1163 58.3
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1245.0 1174 59.1
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1241.1 1173 58.5
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 0.0e+00 1233.8 1340 54.7
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1231.9 1136 58.5
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1224.9 1124 59.1
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1224.2 1237 54.9
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1221.5 1173 57.2
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1216.8 1030 59.9
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1210.7 1157 56.8
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1207.6 1082 60.8
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1197.2 1201 56.9
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1182.9 1142 57.4
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 0.0e+00 1181.8 1182 55.2
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1180.6 1161 56.0
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 0.0e+00 1177.5 1158 54.9
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 0.0e+00 1167.9 1648 45.0
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1165.2 1124 57.1
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1164.8 1158 55.4
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1160.6 1159 56.9
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 0.0e+00 1160.6 1159 56.9
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1153.7 1178 53.9
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1151.0 946 61.9
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 0.0e+00 1150.6 1174 53.3
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 0.0e+00 1148.3 1033 56.2
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 0.0e+00 1147.5 1138 56.2
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1145.2 1146 54.8
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1142.1 1128 55.9
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 1136.3 1208 53.1
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 0.0e+00 1129.4 1164 55.1
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 0.0e+00 1128.2 1144 55.2
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1123.2 995 57.6
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1119.4 1158 55.2
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 0.0e+00 1115.5 1151 54.5
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1108.2 1149 54.4
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1104.0 995 58.5
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 0.0e+00 1103.2 1142 55.2
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 0.0e+00 1078.2 1042 54.6
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 6.3e-307 1057.7 1153 52.0
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 3.1e-306 1055.4 1048 55.5
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 1.0e-301 1040.4 1147 49.3
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 3.0e-293 1012.3 1150 49.5
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 1.4e-290 1003.4 1241 47.1
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 3.4e-268 929.1 980 53.0
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 5.1e-264 915.2 1150 46.3
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 1.1e-250 870.9 714 59.2
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 9.3e-242 841.3 1061 45.0
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 1.6e-238 830.5 1039 47.5
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 2.8e-238 829.7 727 59.8
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 3.1e-229 799.7 838 54.2
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 1.9e-223 780.4 633 61.8
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 5.9e-204 715.7 658 56.4
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 7.7e-204 715.3 655 56.6
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 8.5e-195 685.3 972 41.5
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 9.4e-194 681.8 1175 39.3
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 2.0e-191 674.1 778 51.7
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 1.6e-188 664.5 1139 38.4
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 1.9e-186 657.5 664 53.9
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 1.6e-172 611.3 1200 37.3
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 3.7e-166 590.1 1186 36.9
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 5.4e-165 586.3 489 62.8
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 8.1e-137 492.7 1229 30.7
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 5.8e-111 406.8 431 54.5
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 4.3e-98 364.0 412 54.1
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 1.1e-64 253.1 390 38.5
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 1.6e-60 239.2 179 65.4
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 8.6e-38 163.7 115 67.8
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 7.6e-26 124.0 271 31.4
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 2.6e-18 99.0 165 36.4
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 3.5e-15 88.6 84 50.0
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 3.9e-14 85.1 83 53.0
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 3.3e-13 82.0 81 53.1
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 2.4e-11 75.9 71 54.9
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 9.0e-11 73.9 61 60.7
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 2.1e-07 62.8 48 56.2
Cpa.g.sc7.124 Carica papaya HOM05D006302 ORTHO05D007960 3.0e-06 58.9 179 40.2
Medtr6g072310 Medicago truncatula HOM05D000005 ORTHO05D000012 3.0e-06 58.9 76 43.4


User provided reference genes

Program Settings