Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 3.4e-172 608.2 303 100.0
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 3.4e-95 352.4 286 62.2
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 8.6e-91 337.8 291 58.1
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 1.5e-87 327.0 294 56.5
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 9.8e-87 324.3 289 59.5
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 2.4e-85 319.7 295 57.3
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 1.2e-84 317.4 293 57.0
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 2.7e-84 316.2 292 56.5
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 2.3e-83 313.2 300 56.0
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 4.3e-82 308.9 284 57.0
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 5.6e-82 308.5 291 56.4
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 7.3e-82 308.1 284 56.7
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 7.3e-82 308.1 295 57.3
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 2.1e-81 306.6 281 58.0
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 4.7e-81 305.4 297 56.2
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 4.7e-81 305.4 295 56.3
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.5e-79 300.4 284 55.3
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 2.6e-79 299.7 291 55.7
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 5.8e-79 298.5 286 53.1
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 7.5e-79 298.1 295 55.6
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 1.3e-78 297.4 292 54.1
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 2.2e-78 296.6 308 52.6
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 6.4e-78 295.0 315 52.7
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 1.1e-77 294.3 299 50.2
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.9e-77 293.5 294 52.4
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 2.4e-77 293.1 288 53.8
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.2e-76 290.8 257 58.4
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 1.6e-76 290.4 293 52.2
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 1.6e-76 290.4 296 53.7
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 2.7e-76 289.7 257 58.0
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 4.6e-76 288.9 288 53.5
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 6.0e-76 288.5 288 54.2
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 6.0e-76 288.5 301 52.5
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 1.0e-75 287.7 301 47.8
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 1.0e-75 287.7 272 56.6
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.3e-75 287.3 337 50.1
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 3.0e-75 286.2 286 53.8
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 3.0e-75 286.2 301 51.5
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 3.0e-75 286.2 293 51.2
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 3.9e-75 285.8 291 54.0
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 6.6e-75 285.0 288 51.7
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 1.9e-74 283.5 296 51.0
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 7.3e-74 281.6 290 53.1
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 2.1e-73 280.0 289 52.9
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 3.6e-73 279.3 290 49.7
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 8.1e-73 278.1 264 58.0
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.1e-72 277.7 302 50.3
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 8.9e-72 274.6 287 50.5
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.0e-71 273.5 263 57.4
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 2.6e-71 273.1 263 57.4
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 3.4e-71 272.7 290 52.8
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 4.4e-71 272.3 289 49.1
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 9.9e-71 271.2 251 56.6
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 1.7e-70 270.4 262 55.3
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 2.2e-70 270.0 307 47.9
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 2.2e-70 270.0 296 48.0
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 3.7e-70 269.2 298 51.0
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 4.9e-70 268.9 287 53.0
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 6.4e-70 268.5 289 51.2
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 3.2e-69 266.2 289 51.2
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.6e-68 263.8 275 50.9
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 2.7e-68 263.1 232 58.6
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 4.6e-68 262.3 311 47.3
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 7.8e-68 261.5 279 52.7
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 3.9e-67 259.2 316 45.6
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 1.5e-66 257.3 255 55.7
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 4.3e-66 255.8 249 55.0
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 4.3e-66 255.8 285 49.5
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.1e-65 253.4 284 49.3
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.4e-64 250.8 301 47.2
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 1.2e-63 247.7 309 47.6
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.5e-63 247.3 242 55.8
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 4.9e-62 242.3 258 51.9
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 8.4e-62 241.5 286 42.7
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.4e-61 240.7 312 42.9
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 4.1e-61 239.2 280 48.9
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 7.1e-61 238.4 250 54.0
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 9.2e-61 238.0 259 50.6
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 9.2e-61 238.0 262 50.8
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 9.2e-61 238.0 268 50.7
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 1.6e-60 237.3 294 42.9
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.6e-60 237.3 292 42.8
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.6e-60 237.3 258 52.3
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 2.1e-60 236.9 285 44.2
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 2.7e-60 236.5 262 49.6
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 3.5e-60 236.1 282 44.7
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 3.0e-59 233.0 248 52.8
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 6.6e-59 231.9 305 44.3
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 8.7e-59 231.5 301 44.5
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 1.5e-58 230.7 262 49.6
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 2.5e-58 229.9 286 43.7
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 4.3e-58 229.2 259 48.3
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 7.3e-58 228.4 259 50.6
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 7.3e-58 228.4 405 38.3
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 7.3e-58 228.4 251 49.8
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 9.6e-58 228.0 262 49.2
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 2.8e-57 226.5 259 49.8
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.8e-57 226.5 251 49.4
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 2.8e-57 226.5 262 49.2
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 4.7e-57 225.7 290 42.1
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 4.7e-57 225.7 285 42.5
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 4.7e-57 225.7 285 42.5
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 8.1e-57 224.9 251 48.6
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 1.1e-56 224.6 251 49.0
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.8e-56 223.8 260 51.5
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 2.4e-56 223.4 285 42.1
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 6.9e-56 221.9 199 54.3
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 9.0e-56 221.5 287 42.9
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 1.5e-55 220.7 263 48.7
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 7.6e-55 218.4 293 42.3
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 9.9e-55 218.0 259 48.3
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 6.4e-54 215.3 301 43.9
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 1.4e-53 214.2 212 55.7
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 6.0e-52 208.8 251 45.0
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 5.1e-51 205.7 223 50.2
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 8.7e-51 204.9 277 43.7
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 1.1e-48 198.0 257 44.4
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 5.3e-48 195.7 204 52.5
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 9.0e-48 194.9 284 40.8
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 3.4e-47 193.0 210 52.4
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 1.9e-45 187.2 294 38.8
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 3.2e-45 186.4 218 48.6
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 1.2e-44 184.5 209 50.7
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 7.9e-44 181.8 131 68.7
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 6.7e-43 178.7 127 69.3
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 2.2e-38 163.7 308 36.0
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 2.4e-37 160.2 309 33.0
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 9.3e-37 158.3 227 41.9
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 8.7e-35 151.8 215 40.0
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 1.8e-32 144.1 179 44.1
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 5.3e-32 142.5 243 36.2
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 2.6e-31 140.2 285 34.0
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 2.2e-30 137.1 113 62.8
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 1.1e-29 134.8 146 51.4
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 1.1e-29 134.8 155 47.1
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 5.5e-29 132.5 149 48.3
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 1.2e-28 131.3 102 61.8
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 3.9e-27 126.3 173 42.2
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 1.0e-19 101.7 65 75.4
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 3.4e-15 86.7 109 45.0
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.6e-12 77.8 68 60.3
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 6.3e-09 65.9 178 31.5
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 1.7e-06 57.8 81 37.0
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.9e-06 57.0 130 33.1
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 5.0e-06 56.2 82 36.6


User provided reference genes

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