Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00310 Eucalyptus grandis HOM05D005198 ORTHO05D006839 6.1e-277 956.8 472 100.0
Eucgr.H00311 Eucalyptus grandis HOM05D005198 ORTHO05D006839 1.6e-152 543.5 468 65.2
PGR142G0872 Punica granatum HOM05D005198 ORTHO05D006839 2.8e-128 463.0 472 54.0
QL10p055731 Quercus lobata HOM05D005198 ORTHO05D006839 1.1e-124 451.1 468 51.7
Prupe.1G207000 Prunus persica HOM05D005198 ORTHO05D006839 7.0e-124 448.4 468 53.0
Eucgr.L01724 Eucalyptus grandis HOM05D005198 ORTHO05D006839 9.2e-124 448.0 427 61.6
MD15G1424000 Malus domestica HOM05D005198 ORTHO05D006839 1.0e-122 444.5 468 51.9
Hma1.2p1_0150F.1_g066860 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 1.3e-122 444.1 468 51.7
Dinv07059 Davidia involucrata HOM05D005198 ORTHO05D006839 5.0e-122 442.2 468 52.8
Manes.04G036150 Manihot esculenta HOM05D005198 ORTHO05D006839 8.6e-122 441.4 468 52.6
Atru.BG.83.p Acer truncatum HOM05D005198 ORTHO05D006839 2.5e-121 439.9 462 51.7
Haze_01365 Corylus avellana HOM05D005198 ORTHO05D006839 1.2e-120 437.6 504 48.4
Actinidia28982 Actinidia chinensis HOM05D005198 ORTHO05D006839 2.1e-120 436.8 468 51.3
Rhsim04G0106800 Rhododendron simsii HOM05D005198 ORTHO05D006839 8.0e-120 434.9 468 50.9
GSVIVG01038139001 Vitis vinifera HOM05D005198 ORTHO05D006839 8.9e-119 431.4 468 51.1
TWI63G1273 Tripterygium wilfordii HOM05D005198 ORTHO05D006839 2.0e-118 430.3 468 51.3
Potri.013G126300 Populus trichocarpa HOM05D005198 ORTHO05D006839 5.8e-118 428.7 468 51.7
Ciclev10019752m.g Citrus clementina HOM05D005198 ORTHO05D006839 3.7e-117 426.0 469 50.7
RcHm_v2.0_Chr2g0123631 Rosa chinensis HOM05D005198 ORTHO05D006839 2.4e-116 423.3 472 50.8
TAR365G0102 Trochodendron aralioides HOM05D005198 ORTHO05D006839 4.1e-116 422.5 469 51.0
Sabra13G0105600 Salix brachista HOM05D005198 ORTHO05D006839 5.4e-116 422.2 468 51.1
Thecc.01G302200 Theobroma cacao HOM05D005198 ORTHO05D006839 2.7e-115 419.9 469 51.2
CANSAT11G2028 Cannabis sativa HOM05D005198 ORTHO05D006839 1.9e-113 413.7 469 50.3
SalBow3G0226 Salvia bowleyana HOM05D005198 ORTHO05D006839 3.3e-113 412.9 484 47.3
FAN28G0627 Fragaria x ananassa HOM05D005198 ORTHO05D006839 4.3e-113 412.5 469 48.8
Aqoxy2G02750 Aquilegia oxysepala HOM05D005198 ORTHO05D006839 7.3e-113 411.8 469 49.5
Lj1g0021010 Lotus japonicus HOM05D005198 ORTHO05D006839 2.8e-112 409.8 469 48.6
arahy.Tifrunner.gnm1.ann1.A4X0ZB Arachis hypogaea HOM05D005198 ORTHO05D006839 1.4e-111 407.5 468 48.7
Glyma.07G208200 Glycine max HOM05D005198 ORTHO05D006839 1.4e-111 407.5 469 49.9
arahy.Tifrunner.gnm1.ann1.Q28JUU Arachis hypogaea HOM05D005198 ORTHO05D006839 1.8e-111 407.1 469 48.4
VMungo0251G3269 Vigna mungo HOM05D005198 ORTHO05D006839 4.0e-111 406.0 470 48.9
Lalb_Chr09g0328121 Lupinus albus HOM05D005198 ORTHO05D006839 5.2e-111 405.6 469 49.3
Oeu020813.1 Olea europaea HOM05D005198 ORTHO05D006839 1.2e-110 404.4 470 47.7
Medtr4g087280 Medicago truncatula HOM05D005198 ORTHO05D006839 9.8e-110 401.4 488 46.9
TPR.G23517 Trifolium pratense HOM05D005198 ORTHO05D006839 1.3e-109 401.0 468 48.1
ECA232G1195 Erigeron canadensis HOM05D005198 ORTHO05D006839 1.7e-109 400.6 469 49.3
Glyma.02G137200 Glycine max HOM05D005198 ORTHO05D006839 2.2e-109 400.2 469 49.0
Phvul.003G296400 Phaseolus vulgaris HOM05D005198 ORTHO05D006839 3.7e-109 399.4 469 48.8
Cpa.g.sc9.361 Carica papaya HOM05D005198 ORTHO05D006839 1.9e-108 397.1 418 52.9
Cc03_g14040 Coffea canephora HOM05D005198 ORTHO05D006839 2.4e-108 396.7 468 48.3
MELO3C017760.2 Cucumis melo HOM05D005198 ORTHO05D006839 2.4e-108 396.7 472 47.2
Migut.G01222 Erythranthe guttata HOM05D005198 ORTHO05D006839 2.4e-108 396.7 467 46.5
Solyc08g014060.4 Solanum lycopersicum HOM05D005198 ORTHO05D006839 7.0e-108 395.2 475 47.2
Gohir.A02G009975 Gossypium hirsutum HOM05D005198 ORTHO05D006839 1.2e-107 394.4 469 47.1
PSO732G0749 Papaver somniferum HOM05D005198 ORTHO05D006839 1.2e-107 394.4 469 47.1
AUR62002390 Chenopodium quinoa HOM05D005198 ORTHO05D006839 1.6e-107 394.0 486 45.7
FAN26G1320 Fragaria x ananassa HOM05D005198 ORTHO05D006839 1.6e-107 394.0 526 43.9
Gorai.005G012500 Gossypium raimondii HOM05D005198 ORTHO05D006839 4.6e-107 392.5 469 47.1
Duzib151G0783 Durio zibethinus HOM05D005198 ORTHO05D006839 6.0e-107 392.1 469 48.6
Ah.13g073540 Amaranthus hybridus HOM05D005198 ORTHO05D006839 7.8e-107 391.7 469 46.7
Lsat_1_v5_gn_9_61481 Lactuca sativa HOM05D005198 ORTHO05D006839 7.8e-107 391.7 460 48.5
ClCG07G015220 Citrullus lanatus HOM05D005198 ORTHO05D006839 1.7e-106 390.6 472 47.9
PSO675G4502 Papaver somniferum HOM05D005198 ORTHO05D006839 2.3e-106 390.2 469 46.9
Lj4A14T50 Lonicera japonica HOM05D005198 ORTHO05D006839 5.1e-106 389.0 431 49.7
CAN.G1411.3 Capsicum annuum HOM05D005198 ORTHO05D006839 6.6e-106 388.7 468 47.0
Gohir.D02G010200 Gossypium hirsutum HOM05D005198 ORTHO05D006839 1.1e-105 387.9 469 46.7
CARHR066180 Cardamine hirsuta HOM05D005198 ORTHO05D006839 7.3e-105 385.2 469 46.1
Psat7g121400 Pisum sativum HOM05D005198 ORTHO05D006839 9.5e-105 384.8 469 46.5
Sp5g28150 Schrenkiella parvula HOM05D005198 ORTHO05D006839 9.5e-105 384.8 469 45.8
vmacro09048 Vaccinium macrocarpon HOM05D005198 ORTHO05D006839 9.5e-105 384.8 316 60.1
CsaV3_4G002810 Cucumis sativus L. HOM05D005198 ORTHO05D006839 1.6e-104 384.0 501 44.7
Thhalv10018413m.g Eutrema salsugineum HOM05D005198 ORTHO05D006839 1.6e-104 384.0 469 46.5
Sopen08g004940 Solanum pennellii HOM05D005198 ORTHO05D006839 2.1e-104 383.6 479 45.9
AT1G73180 Arabidopsis thaliana HOM05D005198 ORTHO05D006839 4.7e-104 382.5 471 46.7
Aa31LG4G3470 Aethionema arabicum HOM05D005198 ORTHO05D006839 1.1e-103 381.3 471 45.6
Sed0009334 Sechium edule HOM05D005198 ORTHO05D006839 1.1e-103 381.3 472 46.6
AUR62023798 Chenopodium quinoa HOM05D005198 ORTHO05D006839 1.8e-103 380.6 466 46.8
CSS0046337 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 2.3e-103 380.2 419 51.8
COL.COLO4_23329 Corchorus olitorius HOM05D005198 ORTHO05D006839 3.1e-103 379.8 500 46.0
Hma1.2p1_0150F.1_g066870 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 3.1e-103 379.8 318 60.4
THA.LOC104813938 Tarenaya hassleriana HOM05D005198 ORTHO05D006839 3.1e-103 379.8 471 45.2
AL2G32950 Arabidopsis lyrata HOM05D005198 ORTHO05D006839 4.0e-103 379.4 471 45.6
Carub.0002s1997 Capsella rubella HOM05D005198 ORTHO05D006839 5.8e-102 375.6 469 45.8
FvH4_1g25500 Fragaria vesca HOM05D005198 ORTHO05D006839 1.3e-101 374.4 439 49.2
SGA_v2.0_scaffold12G06184 Striga asiatica HOM05D005198 ORTHO05D006839 6.4e-101 372.1 452 46.0
BolC6t38540H Brassica oleracea HOM05D005198 ORTHO05D006839 3.2e-100 369.8 472 44.3
A07p29920 Brassica napus HOM05D005198 ORTHO05D006839 4.1e-100 369.4 471 44.4
BcaC08g45664 Brassica carinata HOM05D005198 ORTHO05D006839 2.1e-99 367.1 455 45.7
BraA07t30630Z Brassica rapa HOM05D005198 ORTHO05D006839 2.1e-99 367.1 471 43.9
Hund03196 Selenicereus undatus HOM05D005198 ORTHO05D006839 2.1e-99 367.1 455 46.2
Lalb_Chr16g0384461 Lupinus albus HOM05D005198 ORTHO05D006839 2.7e-99 366.7 325 58.8
Nitab4.5_0011921g0010 Nicotiana tabacum HOM05D005198 ORTHO05D006839 6.0e-99 365.5 431 47.1
C06p34190 Brassica napus HOM05D005198 ORTHO05D006839 7.8e-99 365.2 470 44.0
FAN23G1744 Fragaria x ananassa HOM05D005198 ORTHO05D006839 5.1e-98 362.5 470 45.3
Sc25g0002780 Simmondsia chinensis HOM05D005198 ORTHO05D006839 4.3e-97 359.4 317 58.7
CDE04G2667 Ceratophyllum demersum HOM05D005198 ORTHO05D006839 1.1e-95 354.8 451 46.1
FAN19G2119 Fragaria x ananassa HOM05D005198 ORTHO05D006839 1.1e-95 354.8 497 43.5
ATR0733G245 Amborella trichopoda HOM05D005198 ORTHO05D006839 1.9e-92 344.0 470 43.0
unitig_92.g28215 Utricularia gibba HOM05D005198 ORTHO05D006839 9.2e-92 341.7 318 54.4
Peaxi162Scf00075g01544 Petunia axillaris HOM05D005198 ORTHO05D006839 6.0e-91 339.0 469 43.1
Zm00001eb246620 Zea mays HOM05D005198 ORTHO05D006839 8.7e-90 335.1 467 40.9
HanXRQChr15g0483441 Helianthus annuus HOM05D005198 ORTHO05D006839 4.0e-87 326.2 429 45.5
Nitab4.5_0000122g0140 Nicotiana tabacum HOM05D005198 ORTHO05D006839 3.8e-85 319.7 425 44.7
MBI11_g23940_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 2.7e-83 313.5 286 56.6
Atru.chr4.1402 Acer truncatum HOM05D005198 ORTHO05D006839 3.9e-82 309.7 247 61.1
Dinv33201 Davidia involucrata HOM05D005198 ORTHO05D006839 4.3e-81 306.2 310 56.1
EL10Ac3g06083 Beta vulgaris HOM05D005198 ORTHO05D006839 2.9e-77 293.5 279 53.8
CiPaw.02G100600 Carya illinoinensis HOM05D005198 ORTHO05D006839 2.9e-77 293.5 310 52.9
Nn1g09646 Nelumbo nucifera HOM05D005198 ORTHO05D006839 9.3e-76 288.5 310 52.9
DCAR_027527 Daucus carota HOM05D005198 ORTHO05D006839 3.3e-73 280.0 279 52.0
CSS0050366 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 4.0e-71 273.1 247 57.9
Mapoly0011s0080 Marchantia polymorpha HOM05D005198 ORTHO05D006839 2.5e-60 237.3 317 42.3
Pp3c6_14240 Physcomitrium patens HOM05D005198 ORTHO05D006839 1.2e-59 235.0 319 42.3
CBR_g53754 Chara braunii HOM05D005198 ORTHO05D006839 2.4e-55 220.7 325 39.4
Ca_18641_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 2.9e-53 213.8 338 37.6
Ca_25383_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 1.1e-52 211.8 157 69.4
SMO145G0177 Selaginella moellendorffii HOM05D005198 ORTHO05D006839 5.1e-50 203.0 319 38.9
SHI30329 Sapria himalayana HOM05D005198 ORTHO05D000023 1.1e-49 201.8 265 44.9
AagrBONN_evm.TU.Sc2ySwM_228.1363 Anthoceros agrestis HOM05D005198 ORTHO05D006839 3.7e-48 196.8 278 43.2
Hma1.2p1_0554F.1_g177930 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 6.3e-48 196.1 296 41.6
SEGI_32957 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 6.5e-45 186.0 167 55.7
CAN.G256.23 Capsicum annuum HOM05D005198 ORTHO05D006839 6.5e-37 159.5 117 59.8
SHI30330 Sapria himalayana HOM05D000105 ORTHO05D000023 4.1e-31 140.2 167 44.3
Nitab4.5_0009616g0020 Nicotiana tabacum HOM05D005198 ORTHO05D006839 5.9e-30 136.3 104 66.3
MCO01G167 Micromonas commoda HOM05D005198 ORTHO05D006839 1.1e-28 132.1 300 29.3
Cre08.g375900 Chlamydomonas reinhardtii HOM05D005198 ORTHO05D006839 3.6e-27 127.1 293 28.7
SEGI_27162 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 5.2e-26 123.2 141 44.0
BolC3t18675H Brassica oleracea HOM05D005198 ORTHO05D006839 7.5e-25 119.4 100 54.0
Lj3g0007177 Lotus japonicus HOM05D005198 ORTHO05D006839 1.1e-23 115.5 183 37.7
Lj6g0012253 Lotus japonicus HOM05D005198 ORTHO05D006839 1.1e-23 115.5 183 37.7
PRCOL_00000684 Prasinoderma coloniale HOM05D005198 ORTHO05D006839 7.0e-23 112.8 153 39.9
CSS0015120 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 7.2e-20 102.8 77 67.5
MBI14_g40932_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.2e-17 95.5 85 57.6
Lalb_Chr16g0384471 Lupinus albus HOM05D005198 ORTHO05D006839 9.1e-15 85.9 126 41.3
MBI11_g23941_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 5.9e-14 83.2 101 48.5
Glyma.03G132500 Glycine max HOM05D005198 ORTHO05D006839 1.0e-13 82.4 74 55.4
MBI11_g30564_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 6.6e-13 79.7 62 61.3
Dinv33202 Davidia involucrata HOM05D005198 ORTHO05D006839 8.0e-11 72.8 41 78.0
unitig_92.g28214 Utricularia gibba HOM05D005198 ORTHO05D006839 8.0e-11 72.8 73 50.7
DCAR_027526 Daucus carota HOM05D005198 ORTHO05D006839 4.9e-08 63.5 77 46.8
Os02g0606100 Oryza sativa ssp. japonica HOM05D005198 ORTHO05D006839 6.3e-08 63.2 72 51.4
MBI03_g14783_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.2e-06 58.9 66 48.5


User provided reference genes

Program Settings