Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00290 Eucalyptus grandis HOM05D000108 ORTHO05D194271 8.9e-90 333.6 166 100.0
Eucgr.L00643 Eucalyptus grandis HOM05D000108 ORTHO05D001781 2.1e-14 83.2 126 43.7
EL10Ac3g07421 Beta vulgaris HOM05D000108 ORTHO05D001781 2.0e-12 76.6 103 41.7
Thecc.04G190400 Theobroma cacao HOM05D000108 ORTHO05D001781 1.1e-10 70.9 89 48.3
AUR62020903 Chenopodium quinoa HOM05D000108 ORTHO05D001781 1.4e-10 70.5 104 41.3
AUR62018516 Chenopodium quinoa HOM05D000108 ORTHO05D001781 1.8e-10 70.1 104 41.3
Ciclev10004158m.g Citrus clementina HOM05D000108 ORTHO05D001781 2.4e-10 69.7 122 37.7
MELO3C006790.2 Cucumis melo HOM05D000108 ORTHO05D001781 2.4e-10 69.7 122 39.3
Atru.chr3.1770 Acer truncatum HOM05D000108 ORTHO05D001781 3.1e-10 69.3 46 69.6
ClCG05G007110 Citrullus lanatus HOM05D000108 ORTHO05D001781 4.1e-10 68.9 122 38.5
Duzib212G0098 Durio zibethinus HOM05D000108 ORTHO05D001781 5.3e-10 68.6 46 71.7
Duzib212G0747 Durio zibethinus HOM05D000108 ORTHO05D001781 5.3e-10 68.6 80 48.8
COL.COLO4_35968 Corchorus olitorius HOM05D000108 ORTHO05D001781 6.9e-10 68.2 77 50.6
Gohir.A10G131200 Gossypium hirsutum HOM05D000108 ORTHO05D001781 9.1e-10 67.8 134 38.1
Manes.05G198100 Manihot esculenta HOM05D000108 ORTHO05D001781 9.1e-10 67.8 46 71.7
Gohir.A05G327500 Gossypium hirsutum HOM05D000108 ORTHO05D001781 1.2e-09 67.4 134 36.6
Gohir.D10G135500 Gossypium hirsutum HOM05D000108 ORTHO05D001781 1.2e-09 67.4 133 36.8
Gorai.011G150300 Gossypium raimondii HOM05D000108 ORTHO05D001781 1.2e-09 67.4 133 36.8
Gorai.009G351600 Gossypium raimondii HOM05D000108 ORTHO05D001781 1.5e-09 67.0 123 36.6
CsaV3_3G015910 Cucumis sativus L. HOM05D000108 ORTHO05D001781 2.0e-09 66.6 123 36.6
Cpa.g.sc157.6 Carica papaya HOM05D000108 ORTHO05D001781 2.6e-09 66.2 80 45.0
Duzib268G0673 Durio zibethinus HOM05D000108 ORTHO05D001781 2.6e-09 66.2 132 36.4
FvH4_4g12770 Fragaria vesca HOM05D000108 ORTHO05D001781 2.6e-09 66.2 46 67.4
FAN07G1654 Fragaria x ananassa HOM05D000108 ORTHO05D001781 2.6e-09 66.2 46 67.4
FAN12G3779 Fragaria x ananassa HOM05D000108 ORTHO05D001781 2.6e-09 66.2 46 67.4
MD04G1023400 Malus domestica HOM05D000108 ORTHO05D001781 2.6e-09 66.2 46 67.4
Nn1g08106 Nelumbo nucifera HOM05D000108 ORTHO05D001781 2.6e-09 66.2 46 67.4
Psat5g098040 Pisum sativum HOM05D000108 ORTHO05D001781 2.6e-09 66.2 118 37.3
Sed0005082 Sechium edule HOM05D000108 ORTHO05D001781 3.4e-09 65.9 125 36.8
VMungo1383G0476 Vigna mungo HOM05D000108 ORTHO05D001781 3.4e-09 65.9 65 50.8
CDE10G1330 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 4.5e-09 65.5 51 56.9
Duzib151G0632 Durio zibethinus HOM05D000108 ORTHO05D001781 4.5e-09 65.5 46 67.4
MD13G1280700 Malus domestica HOM05D000108 ORTHO05D001781 4.5e-09 65.5 140 35.0
Prupe.1G173100 Prunus persica HOM05D000108 ORTHO05D001781 4.5e-09 65.5 159 30.8
Hund24444 Selenicereus undatus HOM05D000108 ORTHO05D001781 4.5e-09 65.5 98 38.8
Migut.G01138 Erythranthe guttata HOM05D000108 ORTHO05D001781 5.9e-09 65.1 133 34.6
RcHm_v2.0_Chr4g0412101 Rosa chinensis HOM05D000108 ORTHO05D001781 5.9e-09 65.1 46 65.2
TPR.G18094 Trifolium pratense HOM05D000108 ORTHO05D001781 5.9e-09 65.1 118 38.1
A01p31370 Brassica napus HOM05D000108 ORTHO05D001781 7.7e-09 64.7 134 35.1
BraA01t03262Z Brassica rapa HOM05D000108 ORTHO05D001781 7.7e-09 64.7 134 35.1
CANSAT78G1420 Cannabis sativa HOM05D000108 ORTHO05D001781 7.7e-09 64.7 46 63.0
Dinv32176 Davidia involucrata HOM05D000108 ORTHO05D001781 7.7e-09 64.7 89 43.8
Medtr8g080910 Medicago truncatula HOM05D000108 ORTHO05D001781 7.7e-09 64.7 119 37.0
PSO017G4009 Papaver somniferum HOM05D000108 ORTHO05D001781 7.7e-09 64.7 120 35.0
PSO675G2329 Papaver somniferum HOM05D000108 ORTHO05D001781 7.7e-09 64.7 120 35.0
Sed0004792 Sechium edule HOM05D000108 ORTHO05D001781 7.7e-09 64.7 80 46.2
Aqoxy2G03990 Aquilegia oxysepala HOM05D000108 ORTHO05D001781 1.0e-08 64.3 46 65.2
CSS0025991 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001781 1.0e-08 64.3 117 37.6
Dinv27174 Davidia involucrata HOM05D000108 ORTHO05D001781 1.0e-08 64.3 77 48.1
MBI11_g22679_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001781 1.0e-08 64.3 123 34.1
Os04g0350300 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D001781 1.0e-08 64.3 118 33.9
TAR365G0126 Trochodendron aralioides HOM05D000108 ORTHO05D001781 1.0e-08 64.3 46 65.2
Cc03_g09590 Coffea canephora HOM05D000108 ORTHO05D001781 1.3e-08 63.9 46 65.2
Sc19g0007460 Simmondsia chinensis HOM05D000108 ORTHO05D001781 1.3e-08 63.9 80 45.0
PGSC0003DMG400016627 Solanum tuberosum HOM05D000108 ORTHO05D001781 1.3e-08 63.9 80 42.5
BcaB06g26521 Brassica carinata HOM05D000108 ORTHO05D001781 1.7e-08 63.5 134 34.3
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 1.7e-08 63.5 80 45.0
Rhsim02G0069900 Rhododendron simsii HOM05D000108 ORTHO05D001781 1.7e-08 63.5 157 31.8
GSVIVG01021031001 Vitis vinifera HOM05D000108 ORTHO05D001781 1.7e-08 63.5 80 43.8
BcaC06g35554 Brassica carinata HOM05D000108 ORTHO05D001781 2.2e-08 63.2 134 34.3
C07p13580 Brassica napus HOM05D000108 ORTHO05D001781 2.2e-08 63.2 134 34.3
BolC7t41853H Brassica oleracea HOM05D000108 ORTHO05D001781 2.2e-08 63.2 134 34.3
FAN17G2619 Fragaria x ananassa HOM05D000108 ORTHO05D001781 2.2e-08 63.2 140 32.9
Manes.01G003100 Manihot esculenta HOM05D000108 ORTHO05D001781 2.2e-08 63.2 101 40.6
Medtr3g084790 Medicago truncatula HOM05D000108 ORTHO05D001781 2.2e-08 63.2 46 65.2
Peaxi162Scf00286g00077 Petunia axillaris HOM05D000108 ORTHO05D001781 2.2e-08 63.2 77 44.2
QL06p027559 Quercus lobata HOM05D000108 ORTHO05D001781 2.2e-08 63.2 140 35.0
TPR.G11836 Trifolium pratense HOM05D000108 ORTHO05D001781 2.2e-08 63.2 119 36.1
FAN22G0161 Fragaria x ananassa HOM05D000108 ORTHO05D001781 2.9e-08 62.8 140 32.9
Glyma.18G003800 Glycine max HOM05D000108 ORTHO05D001781 2.9e-08 62.8 65 50.8
Hma1.2p1_0984F.1_g244230 Hydrangea macrophylla HOM05D000108 ORTHO05D001781 2.9e-08 62.8 80 43.8
Lj3A357T49 Lonicera japonica HOM05D000108 ORTHO05D001781 2.9e-08 62.8 46 65.2
Nitab4.5_0000309g0250 Nicotiana tabacum HOM05D000108 ORTHO05D001781 2.9e-08 62.8 100 38.0
TWI09G0647 Tripterygium wilfordii HOM05D000108 ORTHO05D001781 2.9e-08 62.8 139 34.5
TWI73G0014 Tripterygium wilfordii HOM05D000108 ORTHO05D001781 2.9e-08 62.8 141 34.0
Ah.13g077770 Amaranthus hybridus HOM05D000108 ORTHO05D001781 3.8e-08 62.4 160 29.4
C01p39960 Brassica napus HOM05D000108 ORTHO05D001781 3.8e-08 62.4 134 33.6
BolC1t03951H Brassica oleracea HOM05D000108 ORTHO05D001781 3.8e-08 62.4 134 33.6
Haze_11691 Corylus avellana HOM05D000108 ORTHO05D001781 3.8e-08 62.4 140 34.3
Thhalv10002371m.g Eutrema salsugineum HOM05D000108 ORTHO05D001781 3.8e-08 62.4 134 34.3
TAR636G1537 Trochodendron aralioides HOM05D000108 ORTHO05D001781 3.8e-08 62.4 46 63.0
Carub.0003s2397 Capsella rubella HOM05D000108 ORTHO05D001781 5.0e-08 62.0 80 43.8
Solyc09g097860.4 Solanum lycopersicum HOM05D000108 ORTHO05D001781 5.0e-08 62.0 80 42.5
Sopen09g035800 Solanum pennellii HOM05D000108 ORTHO05D001781 5.0e-08 62.0 80 42.5
THA.LOC104804780 Tarenaya hassleriana HOM05D000108 ORTHO05D001781 5.0e-08 62.0 80 43.8
AL3G38530 Arabidopsis lyrata HOM05D000108 ORTHO05D001781 6.5e-08 61.6 134 33.6
A07p08750 Brassica napus HOM05D000108 ORTHO05D001781 6.5e-08 61.6 134 33.6
Phvul.001G264500 Phaseolus vulgaris HOM05D000108 ORTHO05D001781 6.5e-08 61.6 99 37.4
Potri.014G149000 Populus trichocarpa HOM05D000108 ORTHO05D001781 6.5e-08 61.6 128 33.6
AT3G23670 Arabidopsis thaliana HOM05D000108 ORTHO05D001781 8.5e-08 61.2 134 33.6
Cfa008671 Carpinus fangiana HOM05D000108 ORTHO05D001781 8.5e-08 61.2 141 36.2
CiPaw.01G112300 Carya illinoinensis HOM05D000108 ORTHO05D001781 8.5e-08 61.2 140 33.6
Glyma.11G253200 Glycine max HOM05D000108 ORTHO05D001781 8.5e-08 61.2 139 31.7
Lalb_Chr23g0278261 Lupinus albus HOM05D000108 ORTHO05D001781 8.5e-08 61.2 119 35.3
Nitab4.5_0010381g0020 Nicotiana tabacum HOM05D000108 ORTHO05D001781 8.5e-08 61.2 46 60.9
SGA_v2.0_scaffold17G08030 Striga asiatica HOM05D000108 ORTHO05D001781 8.5e-08 61.2 80 41.2
Aa31LG8G10220 Aethionema arabicum HOM05D000108 ORTHO05D001781 1.1e-07 60.8 80 42.5
CAN.G1325.2 Capsicum annuum HOM05D000108 ORTHO05D001781 1.1e-07 60.8 82 41.5
Ca_16435_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001781 1.1e-07 60.8 116 37.1
Aa31LG8G10230 Aethionema arabicum HOM05D000108 ORTHO05D001781 1.4e-07 60.5 80 42.5
arahy.Tifrunner.gnm1.ann1.5VKK0P Arachis hypogaea HOM05D000108 ORTHO05D001781 1.9e-07 60.1 119 32.8
CiPaw.02G062000 Carya illinoinensis HOM05D000108 ORTHO05D001781 1.9e-07 60.1 136 31.6
Lj6A347T39 Lonicera japonica HOM05D000108 ORTHO05D001781 1.9e-07 60.1 77 45.5
Sp7g12020 Schrenkiella parvula HOM05D000108 ORTHO05D001781 1.9e-07 60.1 140 31.4
Actinidia13835 Actinidia chinensis HOM05D000108 ORTHO05D001781 2.5e-07 59.7 144 31.9
ATR0561G153 Amborella trichopoda HOM05D000108 ORTHO05D001781 2.5e-07 59.7 46 60.9
PGR142G1031 Punica granatum HOM05D000108 ORTHO05D001781 2.5e-07 59.7 139 34.5
SGA_v2.0_scaffold12G06123 Striga asiatica HOM05D000108 ORTHO05D001781 3.2e-07 59.3 44 59.1
MSTRG.4273 Avicennia marina HOM05D000108 ORTHO05D001781 4.2e-07 58.9 46 56.5
BraA07t28663Z Brassica rapa HOM05D000108 ORTHO05D001781 4.2e-07 58.9 134 32.8
Sp3g21390 Schrenkiella parvula HOM05D000108 ORTHO05D001781 4.2e-07 58.9 80 42.5
unitig_747.g21701 Utricularia gibba HOM05D000108 ORTHO05D001781 4.2e-07 58.9 64 43.8
CARHR099650 Cardamine hirsuta HOM05D000108 ORTHO05D001781 5.5e-07 58.5 123 32.5
Sabra14G0112400 Salix brachista HOM05D000108 ORTHO05D001781 5.5e-07 58.5 136 32.4
HPP92_011789 Vanilla planifolia HOM05D000108 ORTHO05D001781 5.5e-07 58.5 124 33.1
arahy.Tifrunner.gnm1.ann1.GXD1I8 Arachis hypogaea HOM05D001375 ORTHO05D001781 7.2e-07 58.2 119 31.9
arahy.Tifrunner.gnm1.ann1.Q869IZ Arachis hypogaea HOM05D000108 ORTHO05D001781 7.2e-07 58.2 46 58.7
Zm00001eb420500 Zea mays HOM05D000108 ORTHO05D001781 9.4e-07 57.8 144 31.9
AL7G42230 Arabidopsis lyrata HOM05D000108 ORTHO05D001781 1.2e-06 57.4 80 40.0
THA.LOC104808676 Tarenaya hassleriana HOM05D000108 ORTHO05D001781 1.2e-06 57.4 134 32.1
AT4G14150 Arabidopsis thaliana HOM05D000108 ORTHO05D001781 1.6e-06 57.0 140 30.7
arahy.Tifrunner.gnm1.ann1.X8LLQZ Arachis hypogaea HOM05D000108 ORTHO05D001781 1.6e-06 57.0 80 41.2
Lalb_Chr12g0205941 Lupinus albus HOM05D000108 ORTHO05D001781 1.6e-06 57.0 46 56.5
SalBow2G3643 Salvia bowleyana HOM05D000108 ORTHO05D001781 1.6e-06 57.0 46 54.3
vmacro15595 Vaccinium macrocarpon HOM05D000108 ORTHO05D001781 1.6e-06 57.0 157 28.7
Potri.002G235500 Populus trichocarpa HOM05D000108 ORTHO05D001781 2.1e-06 56.6 119 33.6
Actinidia29186 Actinidia chinensis HOM05D000108 ORTHO05D001781 2.7e-06 56.2 46 58.7
Thhalv10024229m.g Eutrema salsugineum HOM05D000108 ORTHO05D001781 3.6e-06 55.8 136 31.6
HanXRQChr01g0021961 Helianthus annuus HOM05D000108 ORTHO05D001781 3.6e-06 55.8 80 40.0
Oeu034297.2 Olea europaea HOM05D000108 ORTHO05D001781 3.6e-06 55.8 81 40.7
DCAR_024118 Daucus carota HOM05D000108 ORTHO05D001781 4.7e-06 55.5 80 38.8
ECA233G2744 Erigeron canadensis HOM05D000108 ORTHO05D001781 4.7e-06 55.5 115 32.2
Lj3C375T8 Lonicera japonica HOM05D000108 ORTHO05D001781 4.7e-06 55.5 75 48.0
Lj4g0020986 Lotus japonicus HOM05D000108 ORTHO05D001781 4.7e-06 55.5 46 56.5
SEGI_27266 Sequoiadendron giganteum HOM05D000108 ORTHO05D001781 6.1e-06 55.1 46 54.3


User provided reference genes

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