Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00285 Eucalyptus grandis HOM05D007607 ORTHO05D009603 1.8e-50 202.6 129 100.0
Ciclev10022842m.g Citrus clementina HOM05D007607 ORTHO05D009603 3.2e-18 95.5 135 57.8
QL10p057428 Quercus lobata HOM05D007607 ORTHO05D009603 6.6e-16 87.8 133 53.4
QL10p057723 Quercus lobata HOM05D007607 ORTHO05D009603 6.6e-16 87.8 133 55.6
Actinidia28975 Actinidia chinensis HOM05D007607 ORTHO05D009603 8.6e-16 87.4 129 48.1
Dinv18311 Davidia involucrata HOM05D007607 ORTHO05D009603 1.9e-15 86.3 134 52.2
PGR142G0203 Punica granatum HOM05D007607 ORTHO05D009603 1.9e-15 86.3 137 54.0
Manes.05G131900 Manihot esculenta HOM05D007607 ORTHO05D009603 2.5e-15 85.9 128 54.7
Haze_01353 Corylus avellana HOM05D007607 ORTHO05D009603 3.3e-15 85.5 134 53.7
RcHm_v2.0_Chr2g0085131 Rosa chinensis HOM05D007607 ORTHO05D009603 2.1e-14 82.8 126 58.7
Cfa015274 Carpinus fangiana HOM05D007607 ORTHO05D009603 2.8e-14 82.4 137 43.1
Potri.013G128700 Populus trichocarpa HOM05D007607 ORTHO05D009603 3.6e-14 82.0 135 50.4
CiPaw.01G169900 Carya illinoinensis HOM05D007607 ORTHO05D009603 6.2e-14 81.3 133 52.6
Gohir.A10G145500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 6.2e-14 81.3 131 52.7
Gohir.D10G121500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 8.0e-14 80.9 131 52.7
Gorai.011G133600 Gossypium raimondii HOM05D007607 ORTHO05D009603 8.0e-14 80.9 131 52.7
CiPaw.02G100000 Carya illinoinensis HOM05D007607 ORTHO05D009603 1.4e-13 80.1 129 52.7
GSVIVG01038189001 Vitis vinifera HOM05D007607 ORTHO05D009603 2.3e-13 79.3 136 52.9
Duzib212G0637 Durio zibethinus HOM05D007607 ORTHO05D009603 3.1e-13 79.0 131 47.3
FvH4_1g00500 Fragaria vesca HOM05D007607 ORTHO05D009603 3.1e-13 79.0 128 54.7
Peaxi162Scf00883g00099 Petunia axillaris HOM05D007607 ORTHO05D009603 4.0e-13 78.6 126 55.6
TWI15G0968 Tripterygium wilfordii HOM05D007607 ORTHO05D009603 4.0e-13 78.6 132 53.8
CAN.G1237.5 Capsicum annuum HOM05D007607 ORTHO05D009603 1.2e-12 77.0 122 54.1
MD15G1147800 Malus domestica HOM05D007607 ORTHO05D009603 2.0e-12 76.3 104 59.6
CSS0042213 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 3.4e-12 75.5 145 53.1
CSS0037895 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 4.4e-12 75.1 142 52.8
Cc03_g14540 Coffea canephora HOM05D007607 ORTHO05D009603 4.4e-12 75.1 128 50.0
ECA233G0487 Erigeron canadensis HOM05D007607 ORTHO05D009603 4.4e-12 75.1 106 47.2
MSTRG.22043 Avicennia marina HOM05D007607 ORTHO05D009603 5.8e-12 74.7 108 54.6
Rhsim02G0085800 Rhododendron simsii HOM05D007607 ORTHO05D009603 5.8e-12 74.7 124 54.8
RhsimUnG0015300 Rhododendron simsii HOM05D007607 ORTHO05D009603 5.8e-12 74.7 132 49.2
Nitab4.5_0008331g0020 Nicotiana tabacum HOM05D001883 ORTHO05D002184 1.3e-11 73.6 119 55.5
Atru.chr4.1510 Acer truncatum HOM05D007607 ORTHO05D009603 2.2e-11 72.8 83 65.1
Migut.N03053 Erythranthe guttata HOM05D007607 ORTHO05D009603 2.2e-11 72.8 81 70.4
Lj4g0023803 Lotus japonicus HOM05D007607 ORTHO05D009603 2.2e-11 72.8 129 50.4
Atru.chr4.1481 Acer truncatum HOM05D007607 ORTHO05D009603 4.9e-11 71.6 83 65.1
Thecc.04G162800 Theobroma cacao HOM05D007607 ORTHO05D009603 6.4e-11 71.2 130 46.2
CANSAT56G1551 Cannabis sativa HOM05D007607 ORTHO05D009603 8.3e-11 70.9 129 45.7
Carub.0001s2092 Capsella rubella HOM05D007607 ORTHO05D009603 8.3e-11 70.9 129 51.9
HanXRQChr02g0059081 Helianthus annuus HOM05D007607 ORTHO05D009603 8.3e-11 70.9 112 52.7
PSO017G0391 Papaver somniferum HOM05D007607 ORTHO05D009603 1.1e-10 70.5 81 54.3
Solyc12g019550.2 Solanum lycopersicum HOM05D007607 ORTHO05D009603 1.1e-10 70.5 116 56.9
Sp1g19030 Schrenkiella parvula HOM05D007607 ORTHO05D009603 1.4e-10 70.1 127 55.9
THA.LOC104813690 Tarenaya hassleriana HOM05D007607 ORTHO05D009603 1.4e-10 70.1 118 52.5
arahy.Tifrunner.gnm1.ann1.RJI6AK Arachis hypogaea HOM05D007607 ORTHO05D009603 1.9e-10 69.7 133 49.6
MSTRG.24562 Avicennia marina HOM05D007607 ORTHO05D009603 1.9e-10 69.7 79 70.9
Lsat_1_v5_gn_8_9141 Lactuca sativa HOM05D007607 ORTHO05D009603 1.9e-10 69.7 128 46.1
EL10Ac3g06110 Beta vulgaris HOM05D007607 ORTHO05D009603 3.2e-10 68.9 81 58.0
Prupe.7G267000 Prunus persica HOM05D007607 ORTHO05D009603 3.2e-10 68.9 90 62.2
Sopen12g009810 Solanum pennellii HOM05D007607 ORTHO05D009603 3.2e-10 68.9 116 55.2
Sc13g0006620 Simmondsia chinensis HOM05D007607 ORTHO05D009603 4.1e-10 68.6 79 48.1
Zm00001eb318610 Zea mays HOM05D007607 ORTHO05D009603 4.1e-10 68.6 86 57.0
TAR362G0213 Trochodendron aralioides HOM05D007607 ORTHO05D009603 5.4e-10 68.2 135 52.6
Aa31LG7G5390 Aethionema arabicum HOM05D007607 ORTHO05D009603 7.0e-10 67.8 130 50.0
BcaC06g34863 Brassica carinata HOM05D007607 ORTHO05D009603 7.0e-10 67.8 126 51.6
BolC7t42778H Brassica oleracea HOM05D007607 ORTHO05D009603 7.0e-10 67.8 126 51.6
Glyma.07G206400 Glycine max HOM05D007607 ORTHO05D009603 7.0e-10 67.8 80 65.0
Nitab4.5_0000575g0080 Nicotiana tabacum HOM05D007607 ORTHO05D009603 7.0e-10 67.8 121 55.4
Hund12359 Selenicereus undatus HOM05D007607 ORTHO05D009603 7.0e-10 67.8 78 57.7
ClCG11G013470 Citrullus lanatus HOM05D007607 ORTHO05D009603 9.2e-10 67.4 130 50.0
A07p15130 Brassica napus HOM05D007607 ORTHO05D009603 1.2e-09 67.0 127 52.0
BraA06t24849Z Brassica rapa HOM05D007607 ORTHO05D009603 1.6e-09 66.6 127 52.8
Cpa.g.sc343.4 Carica papaya HOM05D007607 ORTHO05D009603 1.6e-09 66.6 129 51.2
MELO3C011848.2 Cucumis melo HOM05D007607 ORTHO05D009603 1.6e-09 66.6 132 52.3
Glyma.02G138600 Glycine max HOM05D007607 ORTHO05D009603 1.6e-09 66.6 78 67.9
CARHR021860 Cardamine hirsuta HOM05D007607 ORTHO05D009603 2.0e-09 66.2 125 53.6
PSO675G5570 Papaver somniferum HOM05D007607 ORTHO05D009603 2.0e-09 66.2 139 44.6
SalBow6G6796 Salvia bowleyana HOM05D007607 ORTHO05D009603 2.0e-09 66.2 119 50.4
C05p20400 Brassica napus HOM05D007607 ORTHO05D009603 2.7e-09 65.9 121 52.9
MD02G1004100 Malus domestica HOM05D007607 ORTHO05D009603 2.7e-09 65.9 139 46.8
PGSC0003DMG400029159 Solanum tuberosum HOM05D007607 ORTHO05D009603 2.7e-09 65.9 125 51.2
BcaB03g14267 Brassica carinata HOM05D007607 ORTHO05D009603 3.5e-09 65.5 125 52.0
A06p17530 Brassica napus HOM05D007607 ORTHO05D009603 6.0e-09 64.7 127 52.0
DCAR_005451 Daucus carota HOM05D007607 ORTHO05D009603 6.0e-09 64.7 84 57.1
AL1G34640 Arabidopsis lyrata HOM05D007607 ORTHO05D009603 7.8e-09 64.3 125 54.4
BcaB07g32146 Brassica carinata HOM05D007607 ORTHO05D009603 7.8e-09 64.3 126 50.0
Os09g0517000 Oryza sativa ssp. japonica HOM05D007607 ORTHO05D009603 7.8e-09 64.3 38 86.8
C07p22190 Brassica napus HOM05D007607 ORTHO05D009603 1.0e-08 63.9 126 50.8
AUR62002416 Chenopodium quinoa HOM05D007607 ORTHO05D009603 1.0e-08 63.9 72 50.0
AT1G21500 Arabidopsis thaliana HOM05D007607 ORTHO05D009603 1.7e-08 63.2 125 53.6
BcaC05g26059 Brassica carinata HOM05D007607 ORTHO05D009603 1.7e-08 63.2 132 51.5
BolC5t30734H Brassica oleracea HOM05D007607 ORTHO05D009603 1.7e-08 63.2 132 51.5
Thhalv10009074m.g Eutrema salsugineum HOM05D007607 ORTHO05D009603 1.7e-08 63.2 127 51.2
MBI10_g16327_MAGBIO Magnolia biondii HOM05D007607 ORTHO05D009603 1.7e-08 63.2 128 46.9
AUR62023773 Chenopodium quinoa HOM05D007607 ORTHO05D009603 2.3e-08 62.8 72 63.9
Psat7g119360 Pisum sativum HOM05D007607 ORTHO05D009603 2.3e-08 62.8 147 47.6
TPR.G23536 Trifolium pratense HOM05D007607 ORTHO05D009603 3.0e-08 62.4 79 68.4
CsaV3_5G030090 Cucumis sativus L. HOM05D007607 ORTHO05D009603 3.9e-08 62.0 132 50.8
Lalb_Chr16g0384371 Lupinus albus HOM05D007607 ORTHO05D009603 3.9e-08 62.0 145 44.8
VMungo0251G2348 Vigna mungo HOM05D007607 ORTHO05D009603 5.0e-08 61.6 118 49.2
Sed0020904 Sechium edule HOM05D007607 ORTHO05D009603 8.6e-08 60.8 122 40.2
unitig_22.g5705 Utricularia gibba HOM05D007607 ORTHO05D009603 1.1e-07 60.5 117 44.4
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 3.3e-07 58.9 37 81.1
Medtr4g087540 Medicago truncatula HOM05D007607 ORTHO05D009603 3.3e-07 58.9 82 64.6
Nn7g37525 Nelumbo nucifera HOM05D007607 ORTHO05D009603 3.3e-07 58.9 43 81.4
Aqoxy2G03795 Aquilegia oxysepala HOM05D007607 ORTHO05D009603 2.1e-06 56.2 37 75.7


User provided reference genes

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