Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00103 Eucalyptus grandis HOM05D005430 ORTHO05D007814 3.2e-83 311.6 146 100.0
Prupe.1G058400 Prunus persica HOM05D005430 ORTHO05D007814 5.8e-53 211.1 144 66.7
RcHm_v2.0_Chr4g0396841 Rosa chinensis HOM05D005430 ORTHO05D007814 2.2e-52 209.1 144 68.1
Potri.003G175200 Populus trichocarpa HOM05D005430 ORTHO05D007814 3.2e-51 205.3 146 65.8
Cpa.g.sc59.85 Carica papaya HOM05D005430 ORTHO05D007814 5.5e-51 204.5 137 70.1
FAN17G1087 Fragaria x ananassa HOM05D005430 ORTHO05D007814 1.2e-50 203.4 145 66.9
FAN07G2372 Fragaria x ananassa HOM05D005430 ORTHO05D007814 2.1e-50 202.6 122 73.8
FvH4_4g05670 Fragaria vesca HOM05D005430 ORTHO05D007814 7.9e-50 200.7 145 65.5
MD16G1234100 Malus domestica HOM05D005430 ORTHO05D007814 7.9e-50 200.7 147 62.6
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 1.3e-49 199.9 135 68.1
Sabra03G0128400 Salix brachista HOM05D005430 ORTHO05D007814 1.3e-49 199.9 143 65.7
Duzib212G0862 Durio zibethinus HOM05D005430 ORTHO05D007814 1.8e-49 199.5 139 61.9
FAN22G2342 Fragaria x ananassa HOM05D005430 ORTHO05D007814 3.9e-49 198.4 122 72.1
Potri.001G053100 Populus trichocarpa HOM05D005430 ORTHO05D007814 3.9e-49 198.4 146 65.1
Thecc.04G212700 Theobroma cacao HOM05D005430 ORTHO05D007814 3.9e-49 198.4 143 61.5
Atru.chr4.1803 Acer truncatum HOM05D005430 ORTHO05D007814 6.7e-49 197.6 151 64.9
MD13G1228600 Malus domestica HOM05D005430 ORTHO05D007814 8.7e-49 197.2 146 63.0
FAN12G0934 Fragaria x ananassa HOM05D005430 ORTHO05D007814 1.3e-47 193.4 144 64.6
Gohir.A10G120900 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.3e-47 193.4 146 61.0
Gorai.011G162600 Gossypium raimondii HOM05D005430 ORTHO05D007814 1.3e-47 193.4 146 61.0
Dinv38286 Davidia involucrata HOM05D005430 ORTHO05D007814 1.6e-47 193.0 120 68.3
THA.LOC104821619 Tarenaya hassleriana HOM05D005430 ORTHO05D007814 2.1e-47 192.6 139 66.9
Gohir.D10G145400 Gossypium hirsutum HOM05D005430 ORTHO05D007814 2.8e-47 192.2 144 61.1
Ciclev10006174m.g Citrus clementina HOM05D005430 ORTHO05D007814 3.7e-47 191.8 146 62.3
QL06p023021 Quercus lobata HOM05D005430 ORTHO05D007814 6.2e-47 191.0 122 67.2
QL11p023894 Quercus lobata HOM05D005430 ORTHO05D007814 2.4e-46 189.1 122 66.4
COL.COLO4_34091 Corchorus olitorius HOM05D005430 ORTHO05D007814 6.9e-46 187.6 121 65.3
Manes.03G153100 Manihot esculenta HOM05D005430 ORTHO05D007814 1.2e-45 186.8 139 63.3
Cfa014874 Carpinus fangiana HOM05D005430 ORTHO05D007814 4.5e-45 184.9 139 61.9
CiPaw.01G204600 Carya illinoinensis HOM05D005430 ORTHO05D007814 4.5e-45 184.9 119 68.1
Haze_11548 Corylus avellana HOM05D005430 ORTHO05D007814 1.7e-44 183.0 145 58.6
Sed0021677 Sechium edule HOM05D005430 ORTHO05D007814 3.8e-44 181.8 145 62.1
GSVIVG01029041001 Vitis vinifera HOM05D005430 ORTHO05D007814 3.8e-44 181.8 144 59.0
CSS0041852 Camellia sinensis var. sinensis HOM05D005430 ORTHO05D007814 4.9e-44 181.4 145 60.0
Sed0020493 Sechium edule HOM05D005430 ORTHO05D007814 4.9e-44 181.4 145 62.8
Lsat_1_v5_gn_6_62741 Lactuca sativa HOM05D005430 ORTHO05D007814 8.4e-44 180.6 121 65.3
QL12p006673 Quercus lobata HOM05D005430 ORTHO05D007814 1.4e-43 179.9 139 60.4
MELO3C006342.2 Cucumis melo HOM05D005430 ORTHO05D007814 1.9e-43 179.5 146 62.3
AT3G24060 Arabidopsis thaliana HOM05D005430 ORTHO05D007814 2.5e-43 179.1 144 59.7
AL3G39310 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 4.2e-43 178.3 145 58.6
Manes.15G049100 Manihot esculenta HOM05D005430 ORTHO05D007814 4.2e-43 178.3 142 60.6
QL05p063758 Quercus lobata HOM05D005430 ORTHO05D007814 7.1e-43 177.6 114 66.7
CsaV3_3G011340 Cucumis sativus L. HOM05D005430 ORTHO05D007814 1.2e-42 176.8 142 62.0
BcaB04g20397 Brassica carinata HOM05D005430 ORTHO05D007814 2.1e-42 176.0 146 57.5
QL05p063717 Quercus lobata HOM05D005430 ORTHO05D007814 2.1e-42 176.0 114 65.8
A01p31010 Brassica napus HOM05D005430 ORTHO05D007814 2.7e-42 175.6 146 57.5
BraA01t03227Z Brassica rapa HOM05D005430 ORTHO05D007814 2.7e-42 175.6 146 57.5
TWI73G0050 Tripterygium wilfordii HOM05D005430 ORTHO05D007814 3.5e-42 175.3 150 56.7
Sed0023963 Sechium edule HOM05D005430 ORTHO05D007814 4.6e-42 174.9 127 63.0
Sp3g21900 Schrenkiella parvula HOM05D005430 ORTHO05D007814 7.9e-42 174.1 146 57.5
Thhalv10003022m.g Eutrema salsugineum HOM05D005430 ORTHO05D007814 1.0e-41 173.7 140 60.7
CANSAT78G1772 Cannabis sativa HOM05D005430 ORTHO05D007814 1.3e-41 173.3 111 67.6
CANSAT78G2053 Cannabis sativa HOM05D005430 ORTHO05D007814 1.3e-41 173.3 111 67.6
ClCG05G003630 Citrullus lanatus HOM05D005430 ORTHO05D007814 1.3e-41 173.3 118 68.6
Oeu033089.1 Olea europaea HOM05D005430 ORTHO05D007814 1.3e-41 173.3 121 62.0
Carub.0003s2446 Capsella rubella HOM05D005430 ORTHO05D007814 1.8e-41 172.9 115 66.1
MELO3C023093.2 Cucumis melo HOM05D005430 ORTHO05D007814 3.0e-41 172.2 145 57.9
Hma1.2p1_0903F.1_g235070 Hydrangea macrophylla HOM05D005430 ORTHO05D007814 3.0e-41 172.2 144 50.7
Sed0027066 Sechium edule HOM05D005430 ORTHO05D007814 3.9e-41 171.8 139 61.2
CsaV3_2G012000 Cucumis sativus L. HOM05D005430 ORTHO05D007814 6.7e-41 171.0 121 63.6
Oeu041168.1 Olea europaea HOM05D005430 ORTHO05D007814 6.7e-41 171.0 137 57.7
Rhsim06G0013100 Rhododendron simsii HOM05D005430 ORTHO05D007814 6.7e-41 171.0 118 65.3
AL8G20530 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 8.7e-41 170.6 127 60.6
CARHR100160 Cardamine hirsuta HOM05D005430 ORTHO05D007814 8.7e-41 170.6 143 55.9
CAN.G1745.2 Capsicum annuum HOM05D005430 ORTHO05D007814 5.7e-40 167.9 146 51.4
HanXRQChr07g0185851 Helianthus annuus HOM05D005430 ORTHO05D007814 7.4e-40 167.5 142 53.5
arahy.Tifrunner.gnm1.ann1.D09HZI Arachis hypogaea HOM05D005430 ORTHO05D007814 9.7e-40 167.2 132 57.6
VMungo0540G1768 Vigna mungo HOM05D005430 ORTHO05D007814 9.7e-40 167.2 145 55.2
TPR.G26356 Trifolium pratense HOM05D005430 ORTHO05D007814 1.3e-39 166.8 145 56.6
Migut.N00331 Erythranthe guttata HOM05D005430 ORTHO05D007814 2.2e-39 166.0 146 53.4
Glyma.15G129600 Glycine max HOM05D005430 ORTHO05D007814 4.8e-39 164.9 145 54.5
Sc13g0002820 Simmondsia chinensis HOM05D005430 ORTHO05D007814 4.8e-39 164.9 142 53.5
Phvul.006G128700 Phaseolus vulgaris HOM05D005430 ORTHO05D007814 8.2e-39 164.1 145 53.8
Lalb_Chr15g0088741 Lupinus albus HOM05D005430 ORTHO05D007814 1.4e-38 163.3 145 53.1
Glyma.09G023500 Glycine max HOM05D005430 ORTHO05D007814 1.8e-38 162.9 111 64.9
Psat1g167840 Pisum sativum HOM05D005430 ORTHO05D007814 1.8e-38 162.9 145 53.1
Solyc09g091360.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 2.4e-38 162.5 137 49.6
Medtr2g030100 Medicago truncatula HOM05D005430 ORTHO05D007814 6.9e-38 161.0 145 55.2
C01p39510 Brassica napus HOM05D005430 ORTHO05D007814 1.2e-37 160.2 137 55.5
CAN.G706.30 Capsicum annuum HOM05D005430 ORTHO05D007814 1.5e-37 159.8 119 60.5
HanXRQChr02g0059521 Helianthus annuus HOM05D005430 ORTHO05D007814 2.6e-37 159.1 146 48.6
Medtr2g030080 Medicago truncatula HOM05D005430 ORTHO05D007814 2.6e-37 159.1 138 54.3
SalBow3G0850 Salvia bowleyana HOM05D005430 ORTHO05D007814 2.6e-37 159.1 115 59.1
Sopen12g032930 Solanum pennellii HOM05D005430 ORTHO05D007814 2.6e-37 159.1 113 60.2
BolC1t03901H Brassica oleracea HOM05D005430 ORTHO05D007814 3.4e-37 158.7 137 54.7
PGSC0003DMG400016877 Solanum tuberosum HOM05D005430 ORTHO05D007814 3.4e-37 158.7 146 53.4
SGA_v2.0_scaffold2G00855 Striga asiatica HOM05D005430 ORTHO05D007814 4.5e-37 158.3 114 64.0
Solyc12g098110.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 5.9e-37 157.9 147 52.4
TPR.G26323 Trifolium pratense HOM05D005430 ORTHO05D007814 2.2e-36 156.0 127 54.3
vmacro22822 Vaccinium macrocarpon HOM05D005430 ORTHO05D007814 3.7e-31 138.7 118 59.3
Nitab4.5_0008614g0010 Nicotiana tabacum HOM05D005430 ORTHO05D007814 4.1e-30 135.2 119 52.9
EL10Ac3g06777 Beta vulgaris HOM05D005430 ORTHO05D007814 5.0e-28 128.3 100 58.0
SHI00018 Sapria himalayana HOM05D005430 ORTHO05D007814 4.7e-26 121.7 129 47.3
Actinidia25081 Actinidia chinensis HOM05D005430 ORTHO05D007814 7.9e-26 120.9 113 57.5
Migut.G00603 Erythranthe guttata HOM05D005430 ORTHO05D007814 1.9e-19 99.8 114 42.1
Cpa.g.sc59.81 Carica papaya HOM05D005430 ORTHO05D000119 1.1e-16 90.5 138 36.2
Duzib212G0436 Durio zibethinus HOM05D005430 ORTHO05D007814 2.6e-16 89.4 142 31.7
Nitab4.5_0003185g0070 Nicotiana tabacum HOM05D005430 ORTHO05D007814 2.6e-16 89.4 83 55.4
Cpa.g.sc12.57 Carica papaya HOM05D005430 ORTHO05D007814 2.2e-15 86.3 115 39.1
SalBow2G0067 Salvia bowleyana HOM05D005430 ORTHO05D000119 2.8e-15 85.9 135 34.1
RcHm_v2.0_Chr4g0396551 Rosa chinensis HOM05D005430 ORTHO05D000119 3.7e-15 85.5 110 38.2
Migut.G00604 Erythranthe guttata HOM05D005430 ORTHO05D007814 1.4e-14 83.6 110 36.4
Hma1.2p1_0146F.1_g065590 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 7.0e-14 81.3 124 36.3
COL.COLO4_34097 Corchorus olitorius HOM05D005430 ORTHO05D007814 9.1e-14 80.9 135 31.1
Hma1.2p1_0146F.1_g065570 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 1.2e-13 80.5 120 39.2
Migut.H02432 Erythranthe guttata HOM05D005430 ORTHO05D000119 2.0e-13 79.7 116 34.5
Oeu024845.1 Olea europaea HOM05D005430 ORTHO05D007814 2.0e-13 79.7 118 35.6
Hma1.2p1_0903F.1_g234940 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 4.5e-13 78.6 116 36.2
Hma1.2p1_1359F.1_g278080 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 4.5e-13 78.6 116 36.2
SGA_v2.0_scaffold57G20177 Striga asiatica HOM05D005430 ORTHO05D000119 7.7e-13 77.8 129 31.8
Hma1.2p1_0170F.1_g075380 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 1.7e-12 76.6 148 33.1
Gohir.D09G053020 Gossypium hirsutum HOM05D005430 ORTHO05D007814 2.2e-12 76.3 142 31.7
Gorai.006G055200 Gossypium raimondii HOM05D005430 ORTHO05D007814 3.8e-12 75.5 95 34.7
Hma1.2p1_1359F.1_g278050 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 3.8e-12 75.5 141 33.3
Hma1.2p1_0785F.1_g217560 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 5.0e-12 75.1 117 34.2
Potri.001G053300 Populus trichocarpa HOM05D005430 ORTHO05D007814 5.0e-12 75.1 142 31.7
Gohir.A09G053500 Gossypium hirsutum HOM05D005430 ORTHO05D000119 6.5e-12 74.7 95 34.7
Gorai.006G055400 Gossypium raimondii HOM05D005430 ORTHO05D007814 6.5e-12 74.7 142 31.0
Gohir.D09G053032 Gossypium hirsutum HOM05D005430 ORTHO05D007814 8.5e-12 74.3 95 34.7
COL.COLO4_34098 Corchorus olitorius HOM05D000048 ORTHO05D000207 1.1e-11 73.9 84 36.9
Gohir.A09G053300 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.1e-11 73.9 142 30.3
COL.COLO4_34096 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.5e-11 73.6 147 28.6
COL.COLO4_05733 Corchorus olitorius HOM05D005430 ORTHO05D007814 4.2e-11 72.0 141 30.5
Gorai.009G341000 Gossypium raimondii HOM05D005430 ORTHO05D007814 5.5e-11 71.6 111 34.2
Rhsim09G0049800 Rhododendron simsii HOM05D000256 ORTHO05D000119 5.5e-11 71.6 97 39.2
Migut.F01972 Erythranthe guttata HOM05D000256 ORTHO05D000119 7.2e-11 71.2 108 38.0
Potri.003G201300 Populus trichocarpa HOM05D005430 ORTHO05D000119 9.4e-11 70.9 115 33.0
COL.COLO4_05734 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.2e-10 70.5 123 30.9
Gohir.D05G318200 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.2e-10 70.5 111 33.3
Duzib151G1037 Durio zibethinus HOM05D005430 ORTHO05D007814 1.6e-10 70.1 136 29.4
Rhsim03G0222400 Rhododendron simsii HOM05D005430 ORTHO05D007814 1.6e-10 70.1 142 28.9
Migut.G00616 Erythranthe guttata HOM05D000256 ORTHO05D000119 2.7e-10 69.3 97 40.2
COL.COLO4_05736 Corchorus olitorius HOM05D005430 ORTHO05D007814 3.6e-10 68.9 113 34.5
Hma1.2p1_0453F.1_g156140 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 4.7e-10 68.6 116 36.2
Migut.F01649 Erythranthe guttata HOM05D000256 ORTHO05D000119 6.1e-10 68.2 109 33.9
Migut.J01121 Erythranthe guttata HOM05D000256 ORTHO05D000119 6.1e-10 68.2 121 29.8
Thecc.04G215700 Theobroma cacao HOM05D005430 ORTHO05D007814 1.0e-09 67.4 111 31.5
Phvul.011G169266 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 1.4e-09 67.0 78 43.6
SalBow2G2503 Salvia bowleyana HOM05D005430 ORTHO05D000119 1.4e-09 67.0 98 35.7
COL.COLO4_05731 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.8e-09 66.6 151 29.1
SGA_v2.0_scaffold1G00733 Striga asiatica HOM05D000256 ORTHO05D000119 1.8e-09 66.6 120 34.2
Migut.G00680 Erythranthe guttata HOM05D005430 ORTHO05D000119 3.0e-09 65.9 94 37.2
PGR083G1564 Punica granatum HOM05D005430 ORTHO05D007814 6.7e-09 64.7 124 33.1
Solyc11g071900.1 Solanum lycopersicum HOM05D000256 ORTHO05D000119 6.7e-09 64.7 97 37.1
CAN.G884.1 Capsicum annuum HOM05D000256 ORTHO05D000119 1.5e-08 63.5 98 33.7
SGA_v2.0_scaffold268G46205 Striga asiatica HOM05D000256 ORTHO05D000119 2.0e-08 63.2 114 36.0
Migut.N00481 Erythranthe guttata HOM05D000256 ORTHO05D000119 2.6e-08 62.8 105 33.3
Nitab4.5_0004762g0080 Nicotiana tabacum HOM05D000256 ORTHO05D000119 3.3e-08 62.4 108 31.5
Gohir.A05G316800 Gossypium hirsutum HOM05D005430 ORTHO05D007814 5.7e-08 61.6 111 30.6
Migut.G00700 Erythranthe guttata HOM05D000256 ORTHO05D000119 7.5e-08 61.2 129 31.0
Hma1.2p1_2329F.1_g320010 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 7.5e-08 61.2 111 36.0
Migut.N00479 Erythranthe guttata HOM05D000256 ORTHO05D000119 9.7e-08 60.8 99 34.3
Sabra03G0128300 Salix brachista HOM05D008849 ORTHO05D010556 9.7e-08 60.8 132 31.8
Phvul.011G169288 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 1.7e-07 60.1 78 39.7
HanXRQChr02g0059401 Helianthus annuus HOM05D000256 ORTHO05D000119 2.2e-07 59.7 154 31.8
Nitab4.5_0000128g0100 Nicotiana tabacum HOM05D000256 ORTHO05D000119 2.2e-07 59.7 114 34.2
COL.COLO4_05730 Corchorus olitorius HOM05D005430 ORTHO05D007814 3.7e-07 58.9 115 28.7
FAN17G1524 Fragaria x ananassa HOM05D008849 ORTHO05D010556 3.7e-07 58.9 108 32.4
Migut.N01483 Erythranthe guttata HOM05D000256 ORTHO05D000119 4.8e-07 58.5 119 29.4
Phvul.011G171500 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 8.2e-07 57.8 78 39.7
C02p02520 Brassica napus HOM05D000256 ORTHO05D000119 1.1e-06 57.4 90 33.3
Potri.001G053200 Populus trichocarpa HOM05D008849 ORTHO05D010556 1.1e-06 57.4 143 30.8
PGR044G1572 Punica granatum HOM05D000256 ORTHO05D000119 1.1e-06 57.4 115 31.3
BolC2t06216H Brassica oleracea HOM05D000256 ORTHO05D000119 1.4e-06 57.0 90 33.3
BraA02t04863Z Brassica rapa HOM05D000256 ORTHO05D000119 1.4e-06 57.0 90 33.3
MELO3C021041.2 Cucumis melo HOM05D000256 ORTHO05D000119 1.4e-06 57.0 109 31.2
Rhsim09G0046300 Rhododendron simsii HOM05D000256 ORTHO05D000119 1.4e-06 57.0 147 29.3
RhsimUnG0178100 Rhododendron simsii HOM05D000256 ORTHO05D000119 1.4e-06 57.0 147 29.3
RhsimUnG0182200 Rhododendron simsii HOM05D000256 ORTHO05D000119 1.4e-06 57.0 147 29.3
Migut.G00698 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.8e-06 56.6 87 36.8
Rhsim04G0228300 Rhododendron simsii HOM05D005430 ORTHO05D000119 2.4e-06 56.2 100 31.0
Cfa002530 Carpinus fangiana HOM05D000256 ORTHO05D000119 3.1e-06 55.8 101 30.7
Migut.F01927 Erythranthe guttata HOM05D000256 ORTHO05D000119 3.1e-06 55.8 139 28.8
HanXRQChr10g0312631 Helianthus annuus HOM05D000256 ORTHO05D000119 3.1e-06 55.8 104 32.7
RcHm_v2.0_Chr4g0396831 Rosa chinensis HOM05D008849 ORTHO05D010556 3.1e-06 55.8 138 31.9
Cc04_g12620 Coffea canephora HOM05D000256 ORTHO05D000119 5.3e-06 55.1 92 34.8
Lsat_1_v5_gn_8_12180 Lactuca sativa HOM05D000256 ORTHO05D000119 5.3e-06 55.1 108 35.2
PGSC0003DMG400037544 Solanum tuberosum HOM05D000256 ORTHO05D000119 5.3e-06 55.1 104 32.7
Thecc.04G096600 Theobroma cacao HOM05D000256 ORTHO05D000119 5.3e-06 55.1 97 35.1
Carub.0002s1136 Capsella rubella HOM05D000256 ORTHO05D000119 7.0e-06 54.7 122 27.9
MELO3C021040.2 Cucumis melo HOM05D000256 ORTHO05D000119 7.0e-06 54.7 106 30.2
Peaxi162Scf00047g01539 Petunia axillaris HOM05D000256 ORTHO05D000119 9.1e-06 54.3 139 30.9


User provided reference genes

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