Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 9.1e-295 1016.1 508 100.0
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 9.0e-210 733.8 510 72.4
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 3.8e-208 728.4 510 71.0
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 1.1e-207 726.9 509 70.5
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.6e-206 723.0 510 71.0
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 2.1e-206 722.6 490 73.9
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 2.3e-205 719.2 513 70.8
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 3.0e-205 718.8 511 70.6
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.1e-205 718.0 510 70.4
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 8.7e-205 717.2 514 71.2
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 2.5e-204 715.7 509 71.7
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 3.7e-203 711.8 510 70.2
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.8e-202 709.5 513 69.8
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 5.3e-202 708.0 511 70.1
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.5e-201 706.4 518 68.7
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 1.5e-201 706.4 511 69.3
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 4.5e-201 704.9 514 71.0
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 1.3e-200 703.4 506 70.8
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 2.2e-200 702.6 513 69.6
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 7.1e-199 697.6 509 68.8
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 9.3e-199 697.2 513 69.0
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 6.0e-198 694.5 509 69.7
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 1.8e-197 693.0 514 69.1
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 3.0e-197 692.2 510 67.8
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 6.7e-197 691.0 513 66.7
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.1e-196 690.3 511 68.1
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 2.5e-196 689.1 510 68.2
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 7.4e-196 687.6 511 68.5
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.6e-195 686.4 511 67.1
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.2e-195 686.0 512 67.6
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.2e-195 686.0 511 67.7
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 2.8e-195 685.6 511 67.1
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 3.7e-195 685.3 534 66.3
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 4.8e-195 684.9 509 68.0
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 4.8e-195 684.9 509 68.0
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 1.1e-194 683.7 508 66.1
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 1.8e-194 682.9 511 67.7
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.4e-194 682.6 511 66.7
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 9.0e-194 680.6 573 62.5
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 3.4e-193 678.7 509 66.8
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 3.4e-193 678.7 509 65.8
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 2.9e-192 675.6 508 67.1
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 2.9e-192 675.6 524 65.3
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 5.5e-191 671.4 509 66.0
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 5.5e-191 671.4 509 64.8
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 9.4e-191 670.6 510 65.9
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 6.1e-190 667.9 508 65.6
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 3.0e-189 665.6 510 64.7
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 3.0e-189 665.6 504 65.1
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 1.1e-188 663.7 594 60.3
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.5e-188 663.3 510 65.3
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 5.7e-188 661.4 515 65.6
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 4.8e-187 658.3 518 65.3
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 6.3e-187 657.9 459 70.4
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 8.2e-187 657.5 512 64.6
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 1.4e-186 656.8 509 64.6
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 1.4e-186 656.8 512 64.8
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 1.4e-186 656.8 509 63.9
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 4.5e-185 651.7 514 63.8
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.0e-184 650.6 509 64.2
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 3.2e-183 645.6 502 65.3
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 5.5e-183 644.8 519 64.2
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 5.5e-183 644.8 504 64.1
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 9.4e-183 644.0 517 63.2
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 1.6e-182 643.3 515 63.5
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 2.7e-182 642.5 515 65.4
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 3.6e-182 642.1 454 69.8
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 4.7e-182 641.7 516 63.0
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 7.9e-182 641.0 515 64.9
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 8.8e-181 637.5 515 64.5
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 1.1e-180 637.1 514 64.8
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 1.1e-180 637.1 573 59.3
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 2.0e-180 636.3 510 65.1
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 4.4e-180 635.2 508 65.0
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 5.7e-180 634.8 514 64.2
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 9.7e-180 634.0 514 63.8
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 1.3e-179 633.6 514 64.2
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 1.3e-179 633.6 498 65.9
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 4.8e-179 631.7 511 63.4
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 6.3e-179 631.3 506 63.8
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 8.2e-179 630.9 514 63.2
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-178 630.6 439 70.4
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 2.4e-178 629.4 461 67.9
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 9.1e-178 627.5 507 63.5
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 1.2e-177 627.1 456 67.3
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.5e-177 626.7 492 65.7
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 1.0e-176 624.0 515 62.1
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 2.2e-176 622.9 455 67.0
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 2.9e-176 622.5 515 62.3
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 6.5e-176 621.3 491 65.4
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 8.5e-176 620.9 432 69.0
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 1.1e-175 620.5 500 62.6
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 7.2e-175 617.8 456 66.2
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 4.7e-174 615.1 433 68.8
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 6.1e-174 614.8 515 60.6
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 1.1e-172 610.5 488 62.9
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 1.1e-170 604.0 452 64.6
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 8.5e-168 594.3 426 69.2
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 1.9e-167 593.2 491 61.7
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 4.7e-166 588.6 511 61.6
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.8e-165 586.6 520 57.9
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 6.7e-165 584.7 464 63.6
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.9e-160 569.3 414 68.4
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 2.8e-155 552.7 355 76.9
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 2.2e-147 526.6 371 70.1
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 1.0e-144 517.7 477 54.9
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 5.0e-144 515.4 415 63.1
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 3.4e-140 502.7 384 66.1
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 6.4e-139 498.4 509 54.8
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.6e-134 483.8 452 57.5
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 3.1e-125 453.0 384 60.7
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 7.3e-119 431.8 481 48.6
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.2e-115 420.2 367 57.8
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 8.4e-115 418.3 452 50.4
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 2.1e-113 413.7 436 49.5
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 2.3e-112 410.2 391 57.0
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.7e-105 386.7 495 44.8
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 6.0e-105 385.6 286 66.1
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 2.9e-99 366.7 328 58.2
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 3.1e-77 293.5 675 33.3
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 2.5e-74 283.9 490 36.7
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 2.7e-73 280.4 464 38.4
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 1.4e-66 258.1 447 38.5
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 2.3e-64 250.8 367 39.2
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 8.2e-62 242.3 244 55.3
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 2.8e-54 217.2 220 55.0
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 3.1e-53 213.8 157 68.2
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 5.3e-53 213.0 489 32.9
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 1.2e-39 168.7 206 43.2
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 1.3e-38 165.2 249 40.2
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.9e-35 154.1 102 75.5
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 4.7e-33 146.7 152 54.6
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 2.3e-27 127.9 123 58.5
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 8.9e-24 115.9 343 26.2
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 2.5e-18 97.8 111 53.2
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 4.9e-14 83.6 58 70.7
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 1.3e-11 75.5 49 75.5
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 8.6e-11 72.8 44 68.2
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 2.5e-10 71.2 68 60.3


User provided reference genes

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