Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 3.0e-235 818.1 417 100.0
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 1.1e-189 666.8 417 79.1
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 4.4e-186 654.8 411 76.9
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 7.7e-183 644.0 414 76.1
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 1.7e-182 642.9 414 76.1
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 4.2e-181 638.3 410 76.6
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 7.2e-181 637.5 414 74.4
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 9.4e-181 637.1 414 74.4
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 2.7e-180 635.6 421 74.3
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 3.6e-180 635.2 405 75.3
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 6.1e-180 634.4 414 74.2
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 3.0e-179 632.1 436 71.3
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 3.3e-178 628.6 414 73.2
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 7.5e-178 627.5 411 75.2
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 6.3e-177 624.4 413 74.6
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 1.1e-176 623.6 411 74.2
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 1.1e-176 623.6 411 74.0
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 3.1e-176 622.1 411 74.2
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 4.1e-176 621.7 414 72.9
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 2.0e-175 619.4 414 72.5
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 2.7e-175 619.0 414 72.5
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 4.5e-175 618.2 408 75.2
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 1.0e-174 617.1 404 75.7
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 3.8e-174 615.1 420 73.1
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 3.2e-173 612.1 411 73.2
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 4.2e-173 611.7 414 71.7
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 3.6e-172 608.6 410 72.0
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 8.0e-172 607.4 414 71.3
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.4e-171 606.7 457 67.8
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 2.0e-170 602.8 406 71.2
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 5.7e-170 601.3 407 71.3
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 7.5e-170 600.9 421 70.5
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 2.2e-169 599.4 414 71.0
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 4.8e-169 598.2 410 70.7
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 8.3e-169 597.4 405 70.6
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 1.4e-168 596.7 413 68.8
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 5.4e-168 594.7 408 70.1
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 9.1e-168 594.0 416 69.2
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 1.6e-167 593.2 410 70.5
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 1.6e-167 593.2 414 69.3
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 2.7e-167 592.4 414 68.8
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 3.5e-167 592.0 420 68.6
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 5.9e-167 591.3 414 68.8
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 1.0e-166 590.5 414 69.1
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 2.9e-166 589.0 409 70.9
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 3.8e-166 588.6 411 69.1
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 5.0e-166 588.2 411 69.6
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 5.0e-166 588.2 411 69.3
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 6.5e-166 587.8 407 70.0
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 1.1e-165 587.0 411 69.3
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 9.5e-165 583.9 414 70.0
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 6.1e-164 581.3 408 71.3
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 1.4e-163 580.1 408 68.6
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 4.0e-163 578.6 414 69.1
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 6.8e-163 577.8 443 65.0
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 8.8e-163 577.4 443 65.2
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 8.8e-163 577.4 443 64.8
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 1.5e-162 576.6 414 67.6
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 2.0e-162 576.2 408 68.1
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 2.6e-162 575.9 406 70.2
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 1.3e-161 573.5 410 69.3
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 1.7e-161 573.2 414 68.8
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 4.9e-161 571.6 421 67.7
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 2.4e-160 569.3 414 68.1
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 3.1e-160 568.9 413 67.8
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 3.1e-160 568.9 414 68.1
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 4.1e-160 568.5 414 68.6
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 2.0e-159 566.2 407 68.1
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 1.0e-158 563.9 462 62.3
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.5e-157 560.1 444 64.6
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 4.3e-157 558.5 415 66.0
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 2.1e-156 556.2 409 67.7
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 8.0e-156 554.3 414 65.0
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.8e-155 553.1 437 66.1
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 5.2e-155 551.6 461 61.8
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 7.0e-152 541.2 455 60.9
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 7.8e-151 537.7 408 65.0
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 8.6e-150 534.3 408 64.5
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 1.9e-149 533.1 422 63.3
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 6.2e-148 528.1 441 61.7
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 1.8e-147 526.6 408 64.2
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 5.2e-147 525.0 379 70.2
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 7.0e-144 514.6 445 59.6
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 1.0e-142 510.8 331 74.6
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 1.0e-142 510.8 455 57.4
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 1.3e-142 510.4 411 64.0
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 2.3e-142 509.6 409 60.1
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 1.6e-140 503.4 484 55.4
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 6.8e-139 498.0 411 62.0
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 1.5e-138 496.9 412 63.1
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 3.7e-137 492.3 360 67.2
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 4.9e-137 491.9 342 71.3
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 3.2e-136 489.2 304 78.0
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 1.6e-135 486.9 464 56.2
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 1.5e-133 480.3 409 58.7
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 8.1e-132 474.6 419 57.5
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 5.6e-125 451.8 327 71.6
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 2.7e-119 433.0 406 58.1
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 2.3e-110 403.3 281 70.1
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 9.9e-106 387.9 409 52.8
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 1.8e-102 377.1 262 69.1
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 1.6e-100 370.5 280 65.0
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 2.8e-100 369.8 420 46.7
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 3.7e-100 369.4 238 75.2
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 1.8e-99 367.1 383 50.4
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 7.6e-98 361.7 215 83.7
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 5.5e-96 355.5 211 83.9
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 1.0e-94 351.3 263 68.1
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 1.1e-93 347.8 416 47.4
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 1.1e-88 331.3 318 55.7
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 8.2e-84 315.1 242 62.0
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 3.2e-80 303.1 360 49.4
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 3.6e-79 299.7 412 42.2
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 2.3e-78 297.0 310 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 2.6e-74 283.5 375 44.5
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 8.5e-65 251.9 225 55.6
Thecc.06G067600 Theobroma cacao HOM05D005638 ORTHO05D006913 7.5e-61 238.8 142 78.9
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 2.2e-60 237.3 166 69.3
MD13G1032600 Malus domestica HOM05D005638 ORTHO05D006913 1.5e-53 214.5 153 69.9
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 2.0e-53 214.2 397 35.8
Hma1.2p1_0882F.1_g232190 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 7.5e-53 212.2 137 74.5
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 1.0e-49 201.8 179 55.3
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 1.3e-49 201.4 125 77.6
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 5.5e-48 196.1 403 34.5
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 2.6e-37 160.6 306 36.3
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 1.7e-33 147.9 106 71.7
Rhsim11G0032000 Rhododendron simsii HOM05D005638 ORTHO05D006913 1.7e-33 147.9 157 52.2
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 6.2e-31 139.4 87 78.2
TPR.G7417 Trifolium pratense HOM05D005638 ORTHO05D006913 4.0e-30 136.7 94 71.3
CDE11G0802 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 8.9e-30 135.6 97 63.9
Cfa022174 Carpinus fangiana HOM05D005638 ORTHO05D006913 4.4e-21 106.7 360 28.6
Cre17.g726500 Chlamydomonas reinhardtii HOM05D005638 ORTHO05D006913 4.9e-20 103.2 220 32.3
Rhsim09G0101800 Rhododendron simsii HOM05D005638 ORTHO05D006913 1.1e-19 102.1 116 53.4
SEGI_29357 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 3.2e-19 100.5 97 52.6
FAN28G2655 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.0e-17 95.5 65 70.8
SHI16222 Sapria himalayana HOM05D000030 ORTHO05D007344 2.8e-15 87.4 67 68.7
Rhsim09G0101700 Rhododendron simsii HOM05D005638 ORTHO05D006913 3.1e-14 84.0 79 53.2


User provided reference genes

Program Settings