Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 7.2e-92 340.5 165 100.0
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.4e-15 87.0 66 62.1
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 3.2e-15 85.9 69 59.4
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 5.5e-15 85.1 66 59.1
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 2.7e-14 82.8 66 57.6
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 3.5e-14 82.4 48 75.0
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 3.5e-14 82.4 66 59.1
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 3.5e-14 82.4 67 58.2
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 3.5e-14 82.4 64 60.9
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 4.6e-14 82.0 66 59.1
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 6.0e-14 81.6 65 60.0
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 7.9e-14 81.3 66 60.6
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 1.0e-13 80.9 66 60.6
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 1.0e-13 80.9 66 60.6
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.0e-13 80.9 67 56.7
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.3e-13 80.5 67 61.2
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 1.3e-13 80.5 67 62.7
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 1.3e-13 80.5 66 59.1
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 1.3e-13 80.5 66 56.1
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 1.3e-13 80.5 71 59.2
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 1.8e-13 80.1 50 70.0
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 1.8e-13 80.1 65 56.9
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.8e-13 80.1 65 56.9
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.8e-13 80.1 65 56.9
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 1.8e-13 80.1 66 57.6
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 1.8e-13 80.1 66 57.6
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.3e-13 79.7 65 56.9
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.3e-13 79.7 65 60.0
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 3.0e-13 79.3 48 72.9
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 3.0e-13 79.3 66 60.6
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 3.9e-13 79.0 66 56.1
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 3.9e-13 79.0 64 59.4
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 3.9e-13 79.0 71 56.3
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 3.9e-13 79.0 64 60.9
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 3.9e-13 79.0 67 55.2
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 5.1e-13 78.6 66 59.1
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 5.1e-13 78.6 66 60.6
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 5.1e-13 78.6 66 57.6
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 5.1e-13 78.6 66 53.0
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 5.1e-13 78.6 66 57.6
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 5.1e-13 78.6 64 54.7
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 5.1e-13 78.6 66 60.6
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 5.1e-13 78.6 66 59.1
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 6.7e-13 78.2 70 50.0
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 6.7e-13 78.2 61 59.0
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 8.7e-13 77.8 67 55.2
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 8.7e-13 77.8 67 55.2
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 1.1e-12 77.4 68 55.9
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.1e-12 77.4 61 55.7
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 1.5e-12 77.0 66 57.6
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 1.5e-12 77.0 66 56.1
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 1.9e-12 76.6 66 59.1
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 1.9e-12 76.6 62 58.1
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 1.9e-12 76.6 51 66.7
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.9e-12 76.6 72 58.3
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.5e-12 76.3 59 64.4
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 3.3e-12 75.9 67 52.2
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 3.3e-12 75.9 72 55.6
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 3.3e-12 75.9 72 59.7
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 3.3e-12 75.9 72 55.6
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 3.3e-12 75.9 72 58.3
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 3.3e-12 75.9 72 58.3
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 4.3e-12 75.5 66 56.1
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 4.3e-12 75.5 55 58.2
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 4.3e-12 75.5 66 56.1
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 4.3e-12 75.5 66 56.1
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.3e-12 75.5 72 56.9
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 4.3e-12 75.5 72 56.9
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 5.6e-12 75.1 72 56.9
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 7.4e-12 74.7 45 62.2
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 7.4e-12 74.7 67 52.2
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 7.4e-12 74.7 67 50.7
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 7.4e-12 74.7 67 50.7
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 7.4e-12 74.7 64 54.7
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 7.4e-12 74.7 72 58.3
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 7.4e-12 74.7 72 58.3
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 9.6e-12 74.3 45 64.4
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 1.3e-11 73.9 67 50.7
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 1.3e-11 73.9 67 50.7
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.3e-11 73.9 63 54.0
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 1.3e-11 73.9 66 51.5
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.3e-11 73.9 61 57.4
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 1.6e-11 73.6 70 50.0
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 1.6e-11 73.6 72 52.8
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 2.1e-11 73.2 45 60.0
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 2.1e-11 73.2 67 49.3
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 2.1e-11 73.2 67 49.3
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 2.1e-11 73.2 67 49.3
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 2.1e-11 73.2 67 49.3
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 2.1e-11 73.2 45 62.2
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 2.1e-11 73.2 72 56.9
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.1e-11 73.2 63 54.0
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 2.8e-11 72.8 64 53.1
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 2.8e-11 72.8 49 63.3
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 2.8e-11 72.8 62 56.5
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 2.8e-11 72.8 67 56.7
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 3.7e-11 72.4 67 49.3
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 4.8e-11 72.0 66 53.0
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 4.8e-11 72.0 73 47.9
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 6.2e-11 71.6 63 50.8
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 8.1e-11 71.2 45 62.2
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 8.1e-11 71.2 61 50.8
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 8.1e-11 71.2 43 65.1
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 1.1e-10 70.9 70 45.7
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.1e-10 70.9 45 62.2
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 1.4e-10 70.5 67 43.3
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 1.8e-10 70.1 45 57.8
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 1.8e-10 70.1 43 62.8
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.8e-10 70.1 45 62.2
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 2.4e-10 69.7 46 63.0
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 2.4e-10 69.7 43 65.1
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 3.1e-10 69.3 45 62.2
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 3.1e-10 69.3 70 48.6
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 4.0e-10 68.9 47 55.3
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 5.3e-10 68.6 67 47.8
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 5.3e-10 68.6 66 48.5
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 5.3e-10 68.6 43 62.8
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 6.9e-10 68.2 66 50.0
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 6.9e-10 68.2 72 44.4
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 9.0e-10 67.8 48 58.3
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 9.0e-10 67.8 60 50.0
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 1.2e-09 67.4 66 45.5
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.5e-09 67.0 45 60.0
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.5e-09 67.0 45 57.8
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 2.0e-09 66.6 47 51.1
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 2.0e-09 66.6 64 51.6
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.6e-09 66.2 64 48.4
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 2.6e-09 66.2 70 47.1
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 3.4e-09 65.9 53 50.9
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 1.3e-08 63.9 45 53.3
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 1.3e-08 63.9 45 53.3
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 1.7e-08 63.5 45 53.3
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 2.2e-08 63.2 45 51.1
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 2.2e-08 63.2 45 51.1
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 2.2e-08 63.2 45 51.1
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 2.2e-08 63.2 45 51.1
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 2.2e-08 63.2 45 51.1
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 2.2e-08 63.2 40 70.0
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 2.2e-08 63.2 48 52.1
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 2.2e-08 63.2 45 53.3
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 3.8e-08 62.4 40 70.0
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 4.9e-08 62.0 57 47.4
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 6.5e-08 61.6 36 77.8
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 1.1e-07 60.8 47 48.9
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 1.4e-07 60.5 67 40.3
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.9e-07 60.1 55 54.5
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 5.5e-07 58.5 67 40.3
MBI16_g37211_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 7.1e-07 58.2 63 49.2
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 2.7e-06 56.2 48 56.2
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 4.6e-06 55.5 51 51.0


User provided reference genes

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