Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 4.1e-128 461.5 241 100.0
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 7.9e-47 191.4 242 51.7
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 2.9e-41 172.9 272 46.0
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 8.5e-41 171.4 225 51.1
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 1.1e-40 171.0 273 45.1
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 1.9e-40 170.2 275 45.8
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 7.2e-40 168.3 262 45.8
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 9.3e-40 167.9 259 45.9
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 9.3e-40 167.9 267 44.2
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 4.6e-39 165.6 245 47.3
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 6.1e-39 165.2 156 59.0
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 6.1e-39 165.2 263 45.2
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 1.0e-38 164.5 283 42.4
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 3.9e-38 162.5 235 47.2
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 6.7e-38 161.8 253 44.7
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 6.7e-38 161.8 253 44.7
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 6.7e-38 161.8 241 44.8
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 8.7e-38 161.4 243 46.1
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 1.1e-37 161.0 228 49.6
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 1.1e-37 161.0 275 43.3
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 2.8e-36 156.4 164 56.7
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 3.7e-36 156.0 262 41.2
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 4.8e-36 155.6 270 43.0
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 4.8e-36 155.6 278 41.4
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 8.2e-36 154.8 284 39.8
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 8.2e-36 154.8 250 46.4
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 1.4e-35 154.1 245 46.9
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 2.4e-35 153.3 278 41.0
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 3.1e-35 152.9 248 46.0
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 4.1e-35 152.5 225 48.0
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 4.1e-35 152.5 296 40.2
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 9.0e-35 151.4 160 56.9
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 1.2e-34 151.0 263 44.9
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 2.0e-34 150.2 230 45.7
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 2.6e-34 149.8 250 45.6
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 2.6e-34 149.8 186 50.5
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 7.7e-34 148.3 229 46.7
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 1.3e-33 147.5 150 55.3
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.3e-33 147.5 150 55.3
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.3e-33 147.5 150 55.3
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 6.5e-33 145.2 186 50.0
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 1.9e-32 143.7 300 38.7
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 1.9e-32 143.7 224 45.5
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 1.9e-32 143.7 241 44.8
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 3.2e-32 142.9 178 49.4
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 5.5e-32 142.1 155 56.8
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 9.4e-32 141.4 198 47.0
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 1.2e-31 141.0 252 42.5
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 1.2e-31 141.0 241 44.4
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 2.1e-31 140.2 260 39.6
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 2.7e-31 139.8 217 46.1
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 4.6e-31 139.0 233 45.1
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 4.6e-31 139.0 313 37.7
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 1.0e-30 137.9 277 39.4
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 6.7e-30 135.2 222 44.6
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 2.6e-29 133.3 234 41.5
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 3.3e-29 132.9 221 43.0
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 4.4e-29 132.5 319 38.6
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 7.4e-29 131.7 275 37.5
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 1.7e-28 130.6 214 42.5
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 2.8e-28 129.8 337 33.5
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 3.7e-28 129.4 203 42.4
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 6.3e-28 128.6 123 56.1
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 1.1e-27 127.9 250 42.0
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 1.1e-27 127.9 264 37.5
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 1.4e-27 127.5 283 38.9
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 3.1e-27 126.3 268 40.3
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 6.9e-27 125.2 128 53.1
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 1.2e-26 124.4 273 38.5
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 1.5e-26 124.0 234 41.9
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 2.6e-26 123.2 296 38.2
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 4.5e-26 122.5 238 39.1
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 5.9e-26 122.1 127 52.0
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.0e-25 121.3 149 51.7
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 2.2e-25 120.2 149 52.3
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 3.8e-25 119.4 125 57.6
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 3.8e-25 119.4 320 32.5
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 1.4e-24 117.5 225 42.7
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 1.4e-24 117.5 169 46.7
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 2.5e-24 116.7 188 45.2
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 3.2e-24 116.3 239 41.0
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 5.5e-24 115.5 214 41.1
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 5.5e-24 115.5 137 51.8
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 7.2e-24 115.2 253 37.2
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 9.4e-24 114.8 194 46.4
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 1.6e-23 114.0 129 54.3
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 2.7e-23 113.2 168 45.2
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 3.6e-23 112.8 331 32.0
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 4.7e-23 112.5 226 39.8
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 1.8e-22 110.5 189 41.8
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 2.3e-22 110.2 127 51.2
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 2.3e-22 110.2 127 51.2
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 2.3e-22 110.2 228 39.5
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 5.2e-22 109.0 141 48.2
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 6.7e-22 108.6 196 37.8
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 6.7e-22 108.6 209 43.5
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 8.8e-22 108.2 209 41.6
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 1.5e-21 107.5 130 51.5
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 3.3e-21 106.3 242 37.6
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 4.4e-21 105.9 168 44.6
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 5.7e-21 105.5 242 39.7
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 7.4e-21 105.1 241 39.4
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 7.4e-21 105.1 301 33.2
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 9.7e-21 104.8 209 42.6
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 9.7e-21 104.8 173 43.4
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 4.8e-20 102.4 205 40.0
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 6.3e-20 102.1 201 39.8
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 2.4e-19 100.1 242 38.0
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.4e-19 100.1 321 33.0
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 5.3e-19 99.0 239 36.0
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 1.2e-18 97.8 255 38.0
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 1.6e-18 97.4 245 37.1
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 4.5e-18 95.9 229 37.1
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 5.9e-18 95.5 176 40.9
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 2.9e-17 93.2 175 38.3
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 2.9e-17 93.2 168 39.9
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 8.5e-17 91.7 184 40.8
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 1.1e-16 91.3 150 44.7
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 1.9e-16 90.5 142 45.1
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 1.9e-16 90.5 140 44.3
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 4.2e-16 89.4 349 29.2
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 5.5e-16 89.0 92 59.8
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.0e-14 84.7 213 35.7
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 1.8e-14 84.0 309 29.4
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 4.0e-14 82.8 156 39.1
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 5.2e-14 82.4 114 43.9
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 5.7e-13 79.0 57 66.7
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 7.5e-13 78.6 92 47.8
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 6.3e-12 75.5 64 60.9
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 1.1e-11 74.7 66 60.6
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 1.6e-10 70.9 228 34.2
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 1.6e-10 70.9 161 39.1
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 2.9e-09 66.6 108 43.5
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 1.2e-07 61.2 136 38.2
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 1.6e-07 60.8 223 31.4
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 1.6e-07 60.8 86 46.5
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 6.1e-07 58.9 90 44.4
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 8.0e-07 58.5 77 44.2
BcaB03g16455 Brassica carinata HOM05D004489 ORTHO05D005643 1.8e-06 57.4 83 47.0


User provided reference genes

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