Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 1.3e-132 476.5 257 100.0
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 2.3e-92 342.8 257 73.2
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 1.6e-90 336.7 264 67.4
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 1.8e-89 333.2 258 67.8
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 6.8e-89 331.3 180 88.3
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 1.5e-88 330.1 187 84.0
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 2.0e-88 329.7 232 73.3
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 2.0e-88 329.7 264 67.8
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 2.0e-88 329.7 257 67.7
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 2.0e-88 329.7 181 86.7
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 2.6e-88 329.3 186 83.9
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 4.4e-88 328.6 180 86.7
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 1.7e-87 326.6 257 67.7
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 4.9e-87 325.1 256 67.6
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 4.9e-87 325.1 181 85.1
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 6.4e-87 324.7 180 86.1
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 8.3e-87 324.3 219 73.5
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 1.1e-86 323.9 256 64.8
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 1.9e-86 323.2 180 85.0
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 4.1e-86 322.0 257 69.3
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 4.1e-86 322.0 182 83.0
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 5.4e-86 321.6 186 82.3
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 7.0e-86 321.2 257 65.4
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 9.2e-86 320.9 257 67.3
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 2.7e-85 319.3 178 84.8
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 2.7e-85 319.3 289 59.5
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 3.5e-85 318.9 257 65.0
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 4.6e-85 318.5 212 75.0
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 4.6e-85 318.5 220 73.6
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 6.0e-85 318.2 228 70.2
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 6.0e-85 318.2 180 83.9
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 6.0e-85 318.2 257 65.8
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 7.8e-85 317.8 255 66.3
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 1.0e-84 317.4 257 66.9
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 1.7e-84 316.6 178 84.3
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 2.3e-84 316.2 178 83.1
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 2.3e-84 316.2 257 64.6
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 2.3e-84 316.2 255 63.9
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 5.0e-84 315.1 180 83.3
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 6.6e-84 314.7 179 85.5
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 6.6e-84 314.7 311 55.6
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 6.6e-84 314.7 257 64.2
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.1e-83 313.9 259 64.5
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 4.3e-83 312.0 181 81.8
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 4.3e-83 312.0 219 73.1
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 5.6e-83 311.6 318 53.5
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 7.3e-83 311.2 266 62.4
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 1.2e-82 310.5 219 72.6
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 1.6e-82 310.1 181 82.3
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 2.1e-82 309.7 182 78.6
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.8e-82 309.3 304 58.2
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 2.8e-82 309.3 288 59.4
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 8.1e-82 307.8 257 63.4
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 1.1e-81 307.4 258 62.4
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 3.1e-81 305.8 267 61.0
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 5.2e-81 305.1 256 60.5
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 1.2e-80 303.9 256 60.5
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 1.2e-80 303.9 168 84.5
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 2.0e-80 303.1 256 61.7
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 3.4e-80 302.4 284 64.8
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 9.8e-80 300.8 275 56.7
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 9.8e-80 300.8 257 59.5
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 1.3e-79 300.4 257 60.3
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 1.3e-79 300.4 311 57.6
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 1.7e-79 300.1 182 79.7
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 2.2e-79 299.7 182 79.7
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 2.9e-79 299.3 168 83.9
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 1.1e-78 297.4 256 58.6
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 1.4e-78 297.0 257 59.1
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 3.2e-78 295.8 263 58.6
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 1.2e-77 293.9 256 57.8
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 1.2e-77 293.9 256 57.8
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 1.2e-77 293.9 179 80.4
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.1e-77 293.1 169 83.4
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.1e-77 293.1 170 82.9
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 1.0e-76 290.8 264 57.2
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 1.3e-76 290.4 190 72.6
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 4.3e-75 285.4 286 53.8
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 1.4e-73 280.4 169 77.5
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 3.4e-72 275.8 212 67.0
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 1.3e-71 273.9 249 59.8
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 2.4e-70 269.6 260 55.8
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 9.2e-70 267.7 309 48.2
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 9.2e-70 267.7 253 58.5
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 6.0e-69 265.0 151 82.1
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 1.1e-67 260.8 150 82.7
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 1.9e-67 260.0 145 83.4
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 3.1e-65 252.7 180 66.1
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 8.9e-65 251.1 146 80.1
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 1.2e-64 250.8 240 58.8
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 9.9e-64 247.7 196 62.8
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 2.2e-63 246.5 225 56.0
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 5.4e-62 241.9 255 56.1
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 1.3e-60 237.3 400 40.8
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 4.0e-57 225.7 190 65.8
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 6.9e-57 224.9 297 49.5
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 1.2e-56 224.2 383 38.9
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 2.4e-54 216.5 125 80.8
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 6.7e-52 208.4 187 54.5
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 1.1e-51 207.6 154 68.2
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 7.4e-51 204.9 276 45.7
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 8.1e-50 201.4 131 73.3
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 2.4e-49 199.9 102 91.2
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 1.0e-44 184.5 115 78.3
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 2.6e-40 169.9 129 62.8
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 1.1e-38 164.5 113 67.3
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 1.2e-37 161.0 145 60.7
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 1.3e-36 157.5 98 76.5
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 2.9e-31 139.8 81 79.0
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 9.7e-27 124.8 107 61.7
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 1.0e-23 114.8 99 61.6
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 4.2e-22 109.4 112 54.5
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 1.7e-15 87.4 133 39.8
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 1.2e-08 64.7 113 54.9
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 1.6e-08 64.3 34 85.3
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 2.6e-08 63.5 53 66.0
Ca_23889_v3 Cicer arietinum L. HOM05D006852 ORTHO05D008585 1.9e-06 57.4 29 89.7


User provided reference genes

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