Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.3e-25 119.4 81 100.0
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 6.6e-14 80.5 88 71.6
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 1.9e-13 79.0 84 69.0
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 3.3e-13 78.2 88 60.2
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 3.6e-12 74.7 84 61.9
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 8.1e-12 73.6 86 48.8
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 1.8e-11 72.4 86 73.3
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 1.8e-11 72.4 86 65.1
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 4.0e-11 71.2 86 69.8
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 4.0e-11 71.2 94 42.6
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 4.0e-11 71.2 83 45.8
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 1.5e-10 69.3 80 62.5
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 3.4e-10 68.2 84 66.7
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 4.4e-10 67.8 81 59.3
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 5.8e-10 67.4 88 64.8
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 1.7e-09 65.9 84 63.1
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 2.2e-09 65.5 80 70.0
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 3.7e-09 64.7 79 45.6
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 4.9e-09 64.3 30 90.0
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 4.9e-09 64.3 30 93.3
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 4.9e-09 64.3 80 52.5
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 6.4e-09 63.9 85 60.0
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 1.1e-08 63.2 30 90.0
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 1.1e-08 63.2 30 90.0
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 1.4e-08 62.8 30 90.0
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 1.4e-08 62.8 30 90.0
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 1.4e-08 62.8 30 90.0
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 1.4e-08 62.8 30 90.0
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 1.4e-08 62.8 30 90.0
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.4e-08 62.8 83 43.4
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.4e-08 62.8 30 90.0
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.4e-08 62.8 30 90.0
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.4e-08 62.8 82 43.9
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.4e-08 62.8 30 90.0
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 1.4e-08 62.8 30 90.0
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 1.9e-08 62.4 30 86.7
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 1.9e-08 62.4 30 83.3
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 1.9e-08 62.4 30 90.0
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 1.9e-08 62.4 30 86.7
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 1.9e-08 62.4 30 90.0
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 2.4e-08 62.0 30 86.7
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 2.4e-08 62.0 30 86.7
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 2.4e-08 62.0 30 86.7
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 2.4e-08 62.0 30 86.7
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 2.4e-08 62.0 30 86.7
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 2.4e-08 62.0 30 86.7
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 2.4e-08 62.0 92 42.4
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 2.4e-08 62.0 30 86.7
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 2.4e-08 62.0 30 86.7
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 2.4e-08 62.0 30 86.7
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 2.4e-08 62.0 30 86.7
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 3.2e-08 61.6 30 86.7
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 3.2e-08 61.6 30 90.0
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 3.2e-08 61.6 30 90.0
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.2e-08 61.6 87 43.7
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.2e-08 61.6 30 86.7
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 3.2e-08 61.6 30 83.3
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 3.2e-08 61.6 30 83.3
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 3.2e-08 61.6 85 37.6
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 4.1e-08 61.2 30 86.7
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 4.1e-08 61.2 30 86.7
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 4.1e-08 61.2 30 86.7
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 5.4e-08 60.8 29 93.1
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 5.4e-08 60.8 30 86.7
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 7.1e-08 60.5 30 83.3
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 7.1e-08 60.5 30 83.3
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 7.1e-08 60.5 30 83.3
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 7.1e-08 60.5 30 83.3
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 7.1e-08 60.5 30 83.3
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 7.1e-08 60.5 30 83.3
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 7.1e-08 60.5 30 83.3
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 7.1e-08 60.5 30 83.3
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 7.1e-08 60.5 30 83.3
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 7.1e-08 60.5 30 86.7
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 7.1e-08 60.5 30 83.3
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 9.2e-08 60.1 29 86.2
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 9.2e-08 60.1 30 83.3
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 9.2e-08 60.1 30 83.3
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 9.2e-08 60.1 30 83.3
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 9.2e-08 60.1 30 83.3
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 9.2e-08 60.1 30 83.3
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 9.2e-08 60.1 30 83.3
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 9.2e-08 60.1 30 83.3
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 9.2e-08 60.1 30 80.0
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 9.2e-08 60.1 30 83.3
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 9.2e-08 60.1 30 83.3
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 9.2e-08 60.1 30 83.3
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 9.2e-08 60.1 30 83.3
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 9.2e-08 60.1 30 80.0
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 9.2e-08 60.1 29 89.7
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 1.2e-07 59.7 30 80.0
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 1.2e-07 59.7 30 83.3
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 1.2e-07 59.7 30 83.3
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 1.2e-07 59.7 30 83.3
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 1.2e-07 59.7 30 80.0
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 1.2e-07 59.7 30 83.3
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 1.2e-07 59.7 30 83.3
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 1.2e-07 59.7 30 83.3
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 1.2e-07 59.7 30 83.3
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.6e-07 59.3 30 86.7
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.6e-07 59.3 30 86.7
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.6e-07 59.3 30 80.0
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 1.6e-07 59.3 30 83.3
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 2.1e-07 58.9 30 86.7
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.1e-07 58.9 30 80.0
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.1e-07 58.9 30 80.0
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 2.1e-07 58.9 30 80.0
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.1e-07 58.9 30 83.3
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.1e-07 58.9 30 80.0
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 2.1e-07 58.9 30 80.0
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 2.1e-07 58.9 30 80.0
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 2.7e-07 58.5 30 80.0
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 2.7e-07 58.5 80 41.2
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 3.5e-07 58.2 30 83.3
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.5e-07 58.2 30 76.7
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.5e-07 58.2 30 76.7
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 3.5e-07 58.2 29 82.8
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 4.6e-07 57.8 81 44.4
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.6e-07 57.8 30 73.3
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.6e-07 57.8 89 42.7
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 4.6e-07 57.8 30 80.0
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 4.6e-07 57.8 30 80.0
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 4.6e-07 57.8 30 80.0
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 4.6e-07 57.8 30 80.0
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 6.0e-07 57.4 30 80.0
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 6.0e-07 57.4 30 80.0
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 6.0e-07 57.4 30 80.0
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 6.0e-07 57.4 30 80.0
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 6.0e-07 57.4 30 80.0
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 6.0e-07 57.4 30 80.0
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 7.8e-07 57.0 30 80.0
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 1.0e-06 56.6 80 40.0
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.0e-06 56.6 30 76.7
Potri.006G050800 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.0e-06 56.6 83 60.2
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 1.0e-06 56.6 30 76.7
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 1.3e-06 56.2 30 80.0
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.3e-06 56.2 30 80.0
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 1.3e-06 56.2 30 80.0
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.7e-06 55.8 30 80.0
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.7e-06 55.8 30 76.7
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 1.7e-06 55.8 30 80.0
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.0e-06 55.1 30 80.0
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 8.6e-06 53.5 30 73.3


User provided reference genes

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