Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.5e-62 242.7 119 100.0
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 2.5e-33 145.6 90 75.6
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 3.7e-29 131.7 80 81.2
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.1e-25 120.2 125 52.8
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 2.1e-24 115.9 64 82.8
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 5.1e-23 111.3 62 83.9
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 2.5e-22 109.0 62 80.6
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 4.3e-22 108.2 62 80.6
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 1.3e-21 106.7 64 75.0
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.8e-20 102.8 117 51.3
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 4.1e-20 101.7 117 49.6
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 6.9e-20 100.9 117 50.4
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 9.0e-20 100.5 117 49.6
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 9.0e-20 100.5 117 49.6
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 9.0e-20 100.5 117 49.6
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 1.2e-19 100.1 118 49.2
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 2.6e-19 99.0 74 67.6
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 3.4e-19 98.6 117 48.7
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 4.5e-19 98.2 117 49.6
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 5.9e-19 97.8 57 77.2
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 7.7e-19 97.4 117 47.9
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 1.0e-18 97.1 117 48.7
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 1.3e-18 96.7 119 47.1
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 2.2e-18 95.9 114 49.1
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.2e-18 95.9 117 47.9
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 5.0e-18 94.7 116 48.3
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 6.5e-18 94.4 137 41.6
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 8.5e-18 94.0 116 48.3
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 8.5e-18 94.0 117 47.9
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 1.1e-17 93.6 116 45.7
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 1.1e-17 93.6 117 46.2
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 1.1e-17 93.6 117 46.2
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 1.4e-17 93.2 123 43.9
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 1.9e-17 92.8 117 46.2
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 2.5e-17 92.4 115 46.1
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.5e-17 92.4 116 47.4
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 7.2e-17 90.9 148 40.5
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 9.4e-17 90.5 113 48.7
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 1.2e-16 90.1 64 68.8
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 1.6e-16 89.7 52 76.9
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.6e-16 89.7 113 48.7
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 2.7e-16 89.0 120 45.0
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.7e-16 89.0 120 45.0
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.7e-16 89.0 120 45.0
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.7e-16 89.0 120 45.0
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 2.7e-16 89.0 51 76.5
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 6.1e-16 87.8 120 44.2
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 7.9e-16 87.4 111 46.8
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 1.0e-15 87.0 111 45.9
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 1.0e-15 87.0 116 44.0
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 2.3e-15 85.9 49 79.6
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 3.0e-15 85.5 106 46.2
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 3.0e-15 85.5 106 46.2
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 3.0e-15 85.5 123 40.7
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 3.0e-15 85.5 111 45.0
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 3.0e-15 85.5 111 45.0
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 5.1e-15 84.7 105 46.7
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 5.1e-15 84.7 105 46.7
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 5.1e-15 84.7 105 46.7
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 6.7e-15 84.3 106 46.2
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 6.7e-15 84.3 110 46.4
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 6.7e-15 84.3 110 44.5
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 8.8e-15 84.0 105 45.7
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 8.8e-15 84.0 105 45.7
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 8.8e-15 84.0 111 45.9
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 8.8e-15 84.0 120 45.0
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 1.1e-14 83.6 113 44.2
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 1.1e-14 83.6 113 43.4
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 1.5e-14 83.2 113 43.4
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 2.0e-14 82.8 107 45.8
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 2.0e-14 82.8 113 42.5
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 3.3e-14 82.0 103 46.6
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 4.3e-14 81.6 105 45.7
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 5.7e-14 81.3 103 46.6
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 5.7e-14 81.3 105 44.8
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 7.4e-14 80.9 155 34.2
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 7.4e-14 80.9 137 38.7
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 9.7e-14 80.5 50 70.0
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 9.7e-14 80.5 50 70.0
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 9.7e-14 80.5 50 70.0
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 9.7e-14 80.5 110 41.8
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 9.7e-14 80.5 45 80.0
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 9.7e-14 80.5 45 80.0
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 9.7e-14 80.5 45 80.0
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 1.3e-13 80.1 107 45.8
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 1.3e-13 80.1 105 44.8
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 1.7e-13 79.7 45 80.0
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 1.7e-13 79.7 111 44.1
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 2.2e-13 79.3 110 41.8
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 2.2e-13 79.3 103 45.6
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 2.2e-13 79.3 103 45.6
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 2.2e-13 79.3 45 77.8
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 2.2e-13 79.3 103 45.6
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 2.8e-13 79.0 103 44.7
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 3.7e-13 78.6 45 77.8
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 4.8e-13 78.2 105 42.9
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 4.8e-13 78.2 103 44.7
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 6.3e-13 77.8 45 77.8
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 6.3e-13 77.8 103 44.7
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 6.3e-13 77.8 103 44.7
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 6.3e-13 77.8 103 44.7
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 6.3e-13 77.8 103 44.7
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 6.3e-13 77.8 103 44.7
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 8.2e-13 77.4 103 44.7
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 8.2e-13 77.4 45 77.8
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 1.1e-12 77.0 117 38.5
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 1.4e-12 76.6 45 75.6
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 1.8e-12 76.3 45 73.3
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 3.1e-12 75.5 103 43.7
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 4.1e-12 75.1 46 71.7
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 5.3e-12 74.7 45 73.3
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 9.1e-12 73.9 45 71.1
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 9.1e-12 73.9 113 39.8
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 9.1e-12 73.9 115 37.4
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 1.2e-11 73.6 102 41.2
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 1.5e-11 73.2 102 41.2
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 2.6e-11 72.4 113 38.1
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 3.4e-11 72.0 45 66.7
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 4.5e-11 71.6 45 73.3
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 5.9e-11 71.2 114 37.7
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 5.9e-11 71.2 114 37.7
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 1.7e-10 69.7 119 37.0
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 1.7e-10 69.7 119 37.0
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 2.9e-10 68.9 100 41.0
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 3.8e-10 68.6 101 38.6
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 8.5e-10 67.4 119 36.1
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 8.5e-10 67.4 99 41.4
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 8.5e-10 67.4 122 35.2
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 8.5e-10 67.4 65 46.2
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 1.1e-09 67.0 100 38.0
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 1.1e-09 67.0 100 38.0
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 1.1e-09 67.0 100 38.0
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 1.1e-09 67.0 100 38.0
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 1.1e-09 67.0 100 38.0
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 1.1e-09 67.0 100 38.0
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 1.4e-09 66.6 119 36.1
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 1.9e-09 66.2 97 42.3
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 2.5e-09 65.9 39 74.4
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 3.2e-09 65.5 99 39.4
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 4.2e-09 65.1 42 64.3
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 4.2e-09 65.1 39 74.4
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 4.2e-09 65.1 39 74.4
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 4.2e-09 65.1 39 74.4
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 5.5e-09 64.7 137 34.3
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 2.7e-08 62.4 73 39.7
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 4.7e-08 61.6 41 61.0
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 6.1e-08 61.2 39 64.1
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 6.1e-08 61.2 37 73.0
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 1.8e-07 59.7 89 41.6
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 3.0e-07 58.9 39 64.1
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 1.5e-06 56.6 104 36.5
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 2.0e-06 56.2 45 51.1
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 5.7e-06 54.7 109 34.9
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 7.4e-06 54.3 37 56.8


User provided reference genes

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