Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 2.2e-120 435.6 219 100.0
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 7.1e-63 244.6 213 58.2
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 1.6e-62 243.4 212 59.9
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 3.5e-62 242.3 213 57.7
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 4.6e-62 241.9 215 60.0
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 3.9e-61 238.8 215 59.1
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 6.7e-61 238.0 212 60.8
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 8.7e-61 237.7 218 58.3
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 3.3e-60 235.7 212 57.5
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 5.7e-60 235.0 213 60.1
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 9.6e-60 234.2 217 57.6
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 9.6e-60 234.2 211 57.8
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 4.8e-59 231.9 213 57.3
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 1.4e-58 230.3 212 56.1
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 1.8e-58 229.9 216 56.0
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 5.3e-58 228.4 210 58.1
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 5.9e-57 224.9 214 57.5
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 1.0e-56 224.2 216 56.9
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.3e-56 223.8 212 55.7
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 2.9e-56 222.6 216 55.1
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 8.5e-56 221.1 214 57.0
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 1.9e-55 219.9 215 54.4
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.2e-55 218.8 216 51.9
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 7.2e-55 218.0 211 57.3
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 7.2e-55 218.0 214 56.1
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 9.3e-55 217.6 215 54.9
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 2.1e-54 216.5 217 53.0
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 2.7e-54 216.1 219 55.7
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 6.1e-54 214.9 215 54.9
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 5.1e-53 211.8 214 54.2
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 5.1e-53 211.8 217 53.5
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 5.1e-53 211.8 215 52.1
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 2.5e-52 209.5 232 47.4
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 3.3e-52 209.1 213 53.1
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 3.3e-52 209.1 216 50.9
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 3.3e-52 209.1 214 53.3
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 4.3e-52 208.8 217 53.0
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 5.7e-52 208.4 216 54.6
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 7.4e-52 208.0 214 52.3
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 9.7e-52 207.6 210 53.8
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 1.3e-51 207.2 216 50.0
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 2.2e-51 206.5 215 50.7
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 2.8e-51 206.1 215 51.6
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 1.1e-50 204.1 220 52.7
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 2.4e-50 203.0 215 52.6
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 4.1e-50 202.2 169 58.0
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 5.3e-50 201.8 216 52.3
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 1.2e-49 200.7 186 55.4
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 2.6e-49 199.5 218 51.8
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 4.5e-49 198.7 217 50.2
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 5.9e-49 198.4 214 50.0
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 5.9e-49 198.4 215 50.2
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 7.7e-49 198.0 172 58.1
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 7.7e-49 198.0 216 52.3
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 3.8e-48 195.7 215 49.8
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 1.9e-47 193.4 214 48.6
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 2.5e-47 193.0 214 48.6
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 7.2e-47 191.4 217 48.4
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 1.2e-46 190.7 216 48.1
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 3.9e-45 185.7 216 49.1
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 5.1e-45 185.3 173 54.3
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 8.8e-45 184.5 184 49.5
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 1.5e-44 183.7 220 49.1
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 5.7e-44 181.8 168 54.8
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 1.3e-43 180.6 217 45.6
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 1.5e-41 173.7 209 48.3
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 1.5e-41 173.7 219 44.3
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 2.0e-41 173.3 207 47.3
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 4.5e-41 172.2 209 46.9
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 7.7e-41 171.4 215 48.8
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 1.0e-40 171.0 165 55.2
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 1.3e-40 170.6 212 48.1
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 2.2e-40 169.9 207 46.4
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 6.5e-40 168.3 299 35.8
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 2.5e-39 166.4 215 45.1
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 4.2e-39 165.6 174 51.1
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 2.1e-38 163.3 218 42.7
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 4.7e-38 162.2 212 43.9
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 6.1e-38 161.8 176 49.4
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 7.9e-38 161.4 209 45.5
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 1.0e-37 161.0 141 58.2
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.4e-37 160.6 216 43.1
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 1.8e-37 160.2 163 50.9
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 2.3e-37 159.8 207 44.4
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 3.0e-37 159.5 212 47.2
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 5.2e-37 158.7 218 42.2
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 8.8e-37 157.9 139 59.0
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 1.1e-36 157.5 194 45.4
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 4.4e-36 155.6 216 42.6
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 2.2e-35 153.3 212 42.5
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 3.7e-35 152.5 215 43.7
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 2.4e-34 149.8 173 50.3
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 2.4e-34 149.8 178 46.6
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 9.1e-34 147.9 139 57.6
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 9.1e-34 147.9 177 46.3
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.2e-33 147.5 216 41.2
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 1.6e-33 147.1 139 57.6
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 3.5e-33 146.0 176 45.5
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 5.9e-33 145.2 219 40.2
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 7.7e-33 144.8 176 44.9
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 3.8e-32 142.5 217 39.2
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 1.5e-31 140.6 212 37.7
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 2.5e-31 139.8 120 57.5
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 4.2e-31 139.0 217 38.2
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 4.2e-31 139.0 222 37.8
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 5.5e-31 138.7 211 38.9
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 7.2e-31 138.3 181 42.5
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 9.4e-31 137.9 174 43.1
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 1.2e-30 137.5 145 48.3
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 2.1e-30 136.7 182 45.1
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 2.1e-30 136.7 215 37.7
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 3.6e-30 136.0 164 46.3
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 4.7e-30 135.6 152 43.4
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 8.0e-30 134.8 182 43.4
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 1.0e-29 134.4 154 46.1
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 2.3e-29 133.3 121 56.2
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 4.0e-29 132.5 212 36.8
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 5.2e-29 132.1 153 44.4
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 5.2e-29 132.1 164 44.5
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 5.2e-29 132.1 191 42.9
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 6.7e-29 131.7 197 40.1
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 8.8e-29 131.3 218 35.3
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 1.5e-28 130.6 175 37.7
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 2.6e-28 129.8 137 47.4
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 3.3e-28 129.4 168 42.9
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 5.7e-28 128.6 150 43.3
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 1.7e-27 127.1 164 42.7
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 2.8e-27 126.3 115 56.5
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 4.8e-27 125.6 163 42.3
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 1.1e-26 124.4 181 38.7
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 1.4e-26 124.0 171 37.4
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 3.1e-26 122.9 195 37.9
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 4.1e-26 122.5 139 46.8
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 5.3e-26 122.1 215 36.3
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 5.3e-26 122.1 134 52.2
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 2.2e-24 116.7 151 41.7
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.8e-24 115.9 129 49.6
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 8.5e-24 114.8 125 48.0
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 1.5e-23 114.0 209 35.9
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 9.4e-23 111.3 95 55.8
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 2.1e-22 110.2 130 43.1
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 6.1e-22 108.6 103 48.5
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 1.8e-21 107.1 213 33.3
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.0e-20 103.6 232 34.5
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 4.4e-20 102.4 157 38.9
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 3.1e-18 96.3 64 70.3
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 2.0e-17 93.6 137 38.7
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 3.5e-17 92.8 84 54.8
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 5.0e-16 89.0 115 40.0
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 5.5e-15 85.5 176 34.1
FvH4_3g19550 Fragaria vesca HOM05D004603 ORTHO05D005244 2.8e-14 83.2 87 49.4
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 4.7e-14 82.4 82 50.0
FAN11G0237 Fragaria x ananassa HOM05D004603 ORTHO05D005244 6.1e-14 82.0 87 49.4
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 1.4e-13 80.9 95 47.4
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 1.2e-12 77.8 121 38.0
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 2.6e-12 76.6 107 40.2
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 3.4e-12 76.3 78 48.7
ECA248G0821 Erigeron canadensis HOM05D004603 ORTHO05D005244 7.5e-12 75.1 98 41.8
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 2.8e-11 73.2 113 32.7
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 1.1e-10 71.2 153 31.4
Dinv31495 Davidia involucrata HOM05D004603 ORTHO05D005244 1.4e-10 70.9 73 52.1
Sabra03G0149000 Salix brachista HOM05D004603 ORTHO05D005244 1.6e-09 67.4 221 29.9
BraA09t38742Z Brassica rapa HOM05D000499 ORTHO05D002825 3.3e-07 59.7 101 34.7
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 3.3e-07 59.7 39 66.7
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 7.3e-07 58.5 104 29.8
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 9.5e-07 58.2 91 35.2
MCO07G134 Micromonas commoda HOM05D004603 ORTHO05D005244 3.6e-06 56.2 69 39.1
Aa31LG2G13200 Aethionema arabicum HOM05D000404 ORTHO05D001765 4.7e-06 55.8 50 52.0


User provided reference genes

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