Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 2.6e-172 608.6 301 100.0
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 1.1e-101 374.0 191 95.3
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 1.4e-101 373.6 242 80.6
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 3.1e-101 372.5 191 95.3
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 1.2e-100 370.5 191 94.2
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 2.6e-100 369.4 189 95.2
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 2.6e-100 369.4 191 93.7
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 2.6e-100 369.4 194 92.8
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 3.4e-100 369.0 191 93.2
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 3.4e-100 369.0 191 93.7
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 3.4e-100 369.0 191 93.7
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 4.5e-100 368.6 191 93.7
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 5.9e-100 368.2 192 92.7
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 1.0e-99 367.5 191 93.7
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 1.0e-99 367.5 191 92.1
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 1.0e-99 367.5 191 92.7
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 1.0e-99 367.5 191 93.2
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.3e-99 367.1 191 93.7
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 1.3e-99 367.1 191 93.2
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 2.2e-99 366.3 191 92.1
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 2.2e-99 366.3 191 92.7
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 2.2e-99 366.3 190 92.6
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 2.2e-99 366.3 190 92.6
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 2.9e-99 365.9 188 94.1
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 2.9e-99 365.9 191 92.1
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 5.0e-99 365.2 191 92.7
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 5.0e-99 365.2 192 91.1
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 6.5e-99 364.8 191 91.6
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 6.5e-99 364.8 191 93.2
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 8.5e-99 364.4 191 91.6
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 1.1e-98 364.0 190 91.6
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 1.4e-98 363.6 191 91.6
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 1.4e-98 363.6 191 92.1
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 1.9e-98 363.2 191 92.1
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 1.9e-98 363.2 189 92.6
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.9e-98 363.2 189 92.6
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.9e-98 363.2 189 92.6
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.9e-98 363.2 190 93.2
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 1.9e-98 363.2 191 91.1
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 1.9e-98 363.2 191 91.6
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 2.5e-98 362.8 191 92.7
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 2.5e-98 362.8 191 91.1
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 3.2e-98 362.5 191 91.6
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 3.2e-98 362.5 191 92.1
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 4.2e-98 362.1 191 91.6
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 5.5e-98 361.7 191 90.6
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 5.5e-98 361.7 189 92.1
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 5.5e-98 361.7 191 91.1
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 5.5e-98 361.7 191 91.1
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 7.2e-98 361.3 191 91.6
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 7.2e-98 361.3 189 92.1
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 7.2e-98 361.3 191 91.6
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 9.4e-98 360.9 188 91.0
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 9.4e-98 360.9 189 92.1
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 9.4e-98 360.9 191 91.1
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 9.4e-98 360.9 191 91.1
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 9.4e-98 360.9 189 91.5
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.6e-97 360.1 191 90.1
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 1.6e-97 360.1 188 91.5
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 2.1e-97 359.8 189 91.5
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 2.1e-97 359.8 191 90.1
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.0e-96 357.5 191 90.1
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.4e-96 357.1 195 90.8
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 1.8e-96 356.7 191 88.5
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 1.8e-96 356.7 191 89.0
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 6.7e-96 354.8 191 88.0
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 6.7e-96 354.8 191 88.5
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 8.8e-96 354.4 191 88.5
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 2.0e-95 353.2 201 86.6
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 2.6e-95 352.8 188 89.9
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 3.3e-95 352.4 192 87.5
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 3.3e-95 352.4 195 88.7
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 5.7e-95 351.7 191 87.4
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 7.4e-95 351.3 210 82.9
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 7.4e-95 351.3 216 81.9
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 9.7e-95 350.9 191 85.9
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 2.2e-94 349.7 188 91.0
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 2.8e-94 349.4 189 87.3
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 4.8e-94 348.6 188 86.7
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 6.3e-94 348.2 188 86.7
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 8.2e-94 347.8 188 86.2
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 1.1e-93 347.4 183 91.3
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 1.1e-93 347.4 191 85.9
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 1.1e-93 347.4 189 88.9
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 1.1e-93 347.4 198 85.4
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 1.1e-93 347.4 201 86.1
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 1.4e-93 347.1 188 88.8
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 4.1e-93 345.5 191 85.3
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 5.3e-93 345.1 188 86.2
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 7.0e-93 344.7 188 86.2
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 9.1e-93 344.4 191 83.8
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 9.1e-93 344.4 215 80.9
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 3.5e-92 342.4 232 75.4
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 7.7e-92 341.3 188 86.2
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 6.5e-91 338.2 191 82.7
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.9e-90 336.7 191 81.2
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 2.7e-89 332.8 173 93.1
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 5.2e-88 328.6 189 79.9
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 6.7e-88 328.2 191 79.1
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 8.8e-88 327.8 189 79.4
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.7e-86 323.6 181 88.4
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.7e-86 323.6 181 88.4
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 2.8e-86 322.8 191 77.5
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 1.1e-85 320.9 191 80.6
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 1.4e-85 320.5 173 87.3
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.7e-83 313.5 188 76.6
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 6.5e-83 311.6 188 75.5
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.9e-82 310.1 160 93.8
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 9.4e-82 307.8 167 88.6
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 4.4e-79 298.9 160 88.1
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 4.8e-78 295.4 160 88.1
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 3.5e-76 289.3 161 87.6
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 8.6e-75 284.6 171 83.0
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.4e-72 277.3 209 68.9
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 4.3e-66 255.8 188 65.4
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 4.4e-63 245.7 140 85.7
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 8.3e-62 241.5 190 62.6
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.3e-58 229.6 183 60.7
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.6e-55 219.9 206 52.4
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 4.4e-55 219.2 113 90.3
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 9.8e-55 218.0 149 73.2
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 3.2e-53 213.0 130 82.3
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 1.3e-51 207.6 112 87.5
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 6.6e-51 205.3 106 87.7
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.1e-50 204.5 109 92.7
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 5.6e-50 202.2 109 89.9
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 3.6e-49 199.5 158 63.9
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 6.2e-49 198.7 111 88.3
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 9.9e-39 164.9 80 95.0
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 9.9e-39 164.9 82 92.7
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 1.3e-38 164.5 82 92.7
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 2.9e-38 163.3 82 91.5
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 7.1e-37 158.7 81 87.7
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 3.0e-35 153.3 84 89.3
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.6e-33 146.4 157 47.1
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 6.2e-33 145.6 74 90.5
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 5.3e-32 142.5 71 91.5
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 5.3e-32 142.5 81 85.2
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 9.9e-31 138.3 71 90.1
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 8.7e-27 125.2 68 85.3
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 8.7e-27 125.2 68 85.3
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 1.1e-26 124.8 84 77.4
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 2.5e-26 123.6 68 83.8
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 1.1e-18 98.2 51 86.3
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 6.2e-17 92.4 47 87.2
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 1.8e-11 74.3 38 84.2
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 1.8e-11 74.3 38 84.2
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 1.8e-11 74.3 38 84.2
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 1.8e-11 74.3 38 84.2
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 2.3e-11 73.9 37 86.5


User provided reference genes

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