Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.0e-98 363.6 208 100.0
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 3.1e-84 315.5 224 83.9
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 3.1e-76 288.9 198 81.3
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 2.7e-35 152.9 215 48.8
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 1.1e-31 141.0 214 45.8
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 1.4e-31 140.6 213 46.9
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 1.8e-31 140.2 209 45.5
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 2.4e-31 139.8 205 49.8
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 5.2e-31 138.7 219 45.2
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 2.0e-30 136.7 212 45.8
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 5.8e-30 135.2 227 42.3
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 7.6e-30 134.8 227 42.3
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 1.7e-29 133.7 207 44.9
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 2.9e-29 132.9 228 44.7
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 4.9e-29 132.1 206 42.7
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 4.9e-29 132.1 204 44.1
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 6.4e-29 131.7 205 44.4
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 6.4e-29 131.7 204 44.1
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 1.1e-28 131.0 205 42.9
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 1.9e-28 130.2 217 41.9
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 2.4e-28 129.8 210 44.8
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 3.2e-28 129.4 224 41.1
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 7.1e-28 128.3 224 43.3
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 1.6e-27 127.1 206 44.2
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 6.0e-27 125.2 112 64.3
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 7.8e-27 124.8 109 63.3
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 1.0e-26 124.4 108 62.0
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 1.7e-26 123.6 87 69.0
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 1.7e-26 123.6 141 52.5
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 3.0e-26 122.9 99 63.6
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 3.0e-26 122.9 141 52.5
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 3.0e-26 122.9 205 43.4
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 3.0e-26 122.9 99 61.6
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 3.9e-26 122.5 142 50.7
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 3.9e-26 122.5 141 53.2
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 5.1e-26 122.1 106 59.4
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 1.1e-25 120.9 231 38.5
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 1.9e-25 120.2 142 50.0
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.9e-25 120.2 234 39.3
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 1.9e-25 120.2 209 43.5
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 1.9e-25 120.2 143 49.7
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 2.5e-25 119.8 88 69.3
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 2.5e-25 119.8 89 71.9
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 2.5e-25 119.8 89 71.9
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 2.5e-25 119.8 89 66.3
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 3.3e-25 119.4 88 70.5
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 3.3e-25 119.4 223 40.8
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 4.3e-25 119.0 210 41.9
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 7.3e-25 118.2 112 58.9
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 9.6e-25 117.9 98 62.2
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 9.6e-25 117.9 179 43.6
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.6e-24 117.1 97 63.9
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 1.6e-24 117.1 99 61.6
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 2.8e-24 116.3 112 57.1
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 2.8e-24 116.3 112 57.1
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 2.8e-24 116.3 204 42.6
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 2.8e-24 116.3 213 40.8
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 2.8e-24 116.3 213 44.1
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 3.6e-24 115.9 118 55.9
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 3.6e-24 115.9 88 67.0
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 3.6e-24 115.9 88 67.0
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 3.6e-24 115.9 88 67.0
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 3.6e-24 115.9 88 67.0
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 3.6e-24 115.9 88 67.0
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 4.7e-24 115.5 209 41.1
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 4.7e-24 115.5 209 40.7
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 6.2e-24 115.2 88 65.9
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 6.2e-24 115.2 88 65.9
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 8.1e-24 114.8 88 65.9
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 8.1e-24 114.8 229 40.2
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.1e-23 114.4 219 38.8
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 1.4e-23 114.0 98 59.2
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 1.4e-23 114.0 106 60.4
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 2.4e-23 113.2 111 60.4
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 2.4e-23 113.2 83 66.3
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 4.0e-23 112.5 149 49.0
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 5.3e-23 112.1 81 69.1
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 5.3e-23 112.1 89 61.8
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 6.9e-23 111.7 99 58.6
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 6.9e-23 111.7 99 58.6
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 6.9e-23 111.7 210 40.0
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 9.0e-23 111.3 209 40.7
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 9.0e-23 111.3 106 59.4
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 9.0e-23 111.3 115 56.5
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 1.2e-22 110.9 108 55.6
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 1.2e-22 110.9 213 40.8
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 1.2e-22 110.9 108 59.3
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.5e-22 110.5 212 41.0
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 1.5e-22 110.5 147 47.6
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 3.4e-22 109.4 215 40.5
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 3.4e-22 109.4 88 60.2
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 3.4e-22 109.4 249 37.3
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 7.6e-22 108.2 88 63.6
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 9.9e-22 107.8 77 67.5
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 9.9e-22 107.8 115 53.9
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 1.3e-21 107.5 98 59.2
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 2.9e-21 106.3 88 58.0
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 2.9e-21 106.3 241 36.5
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 3.8e-21 105.9 93 55.9
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 3.8e-21 105.9 118 49.2
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 4.9e-21 105.5 106 53.8
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 6.4e-21 105.1 82 61.0
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 1.1e-20 104.4 157 45.2
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 1.1e-20 104.4 157 45.2
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 1.1e-20 104.4 206 37.9
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 1.4e-20 104.0 217 39.2
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 1.4e-20 104.0 95 58.9
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 2.4e-20 103.2 99 56.6
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 2.4e-20 103.2 84 59.5
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 5.4e-20 102.1 122 50.0
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 5.4e-20 102.1 122 50.0
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 5.4e-20 102.1 122 50.0
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 5.4e-20 102.1 85 58.8
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 7.1e-20 101.7 106 49.1
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 1.6e-19 100.5 89 52.8
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 2.7e-19 99.8 105 53.3
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 2.7e-19 99.8 88 58.0
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 4.6e-19 99.0 65 76.9
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 5.1e-18 95.5 110 51.8
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 8.7e-18 94.7 110 53.6
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 2.5e-17 93.2 67 71.6
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 5.6e-17 92.0 92 54.3
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 2.1e-16 90.1 65 66.2
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.1e-16 90.1 73 60.3
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.1e-16 90.1 73 60.3
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 3.6e-16 89.4 75 60.0
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 4.8e-16 89.0 101 46.5
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 1.4e-15 87.4 141 38.3
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 7.1e-12 75.1 56 71.4
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 6.0e-11 72.0 41 85.4
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 9.0e-07 58.2 32 87.5


User provided reference genes

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