Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G03123 Eucalyptus grandis HOM05D007902 ORTHO05D009839 3.0e-94 348.6 186 100.0
QL08p064506 Quercus lobata HOM05D007902 ORTHO05D009839 2.2e-41 172.9 188 50.5
Dinv21823 Davidia involucrata HOM05D007902 ORTHO05D009839 5.0e-41 171.8 184 50.5
TAR623G0347 Trochodendron aralioides HOM05D007902 ORTHO05D009839 6.1e-39 164.9 157 52.9
Potri.019G049100 Populus trichocarpa HOM05D007902 ORTHO05D009839 8.0e-39 164.5 184 50.5
Sabra19G0058600 Salix brachista HOM05D007902 ORTHO05D009839 1.5e-37 160.2 183 50.3
Hma1.2p1_0292F.1_g115760 Hydrangea macrophylla HOM05D007902 ORTHO05D009839 5.7e-37 158.3 184 48.9
Manes.07G138200 Manihot esculenta HOM05D007902 ORTHO05D009839 7.5e-37 157.9 150 55.3
Cpa.g.sc19.89 Carica papaya HOM05D007902 ORTHO05D009839 1.3e-36 157.1 185 45.9
Gohir.A13G005700 Gossypium hirsutum HOM05D007902 ORTHO05D009839 2.2e-36 156.4 184 48.9
Gohir.D13G005400 Gossypium hirsutum HOM05D007902 ORTHO05D009839 8.3e-36 154.5 159 54.1
Gorai.013G006100 Gossypium raimondii HOM05D007902 ORTHO05D009839 8.3e-36 154.5 159 54.1
Haze_17334 Corylus avellana HOM05D007902 ORTHO05D009839 7.0e-35 151.4 167 50.3
CiPaw.01G304600 Carya illinoinensis HOM05D007902 ORTHO05D009839 3.5e-34 149.1 158 51.9
vmacro09979 Vaccinium macrocarpon HOM05D007902 ORTHO05D009839 4.5e-34 148.7 139 53.2
PGR142G4074 Punica granatum HOM05D007902 ORTHO05D009839 7.7e-34 147.9 186 46.8
Actinidia07804 Actinidia chinensis HOM05D007902 ORTHO05D009839 1.0e-33 147.5 184 47.8
Ciclev10032767m.g Citrus clementina HOM05D007902 ORTHO05D009839 1.7e-33 146.7 153 52.3
FvH4_7g25601 Fragaria vesca HOM05D007902 ORTHO05D009839 1.7e-33 146.7 158 52.5
COL.COLO4_26867 Corchorus olitorius HOM05D005928 ORTHO05D007500 5.0e-33 145.2 157 54.1
Nn2g10362 Nelumbo nucifera HOM05D007902 ORTHO05D009839 8.5e-33 144.4 158 49.4
Migut.F00588 Erythranthe guttata HOM05D007902 ORTHO05D009839 4.2e-32 142.1 157 48.4
FAN03G2841 Fragaria x ananassa HOM05D001122 ORTHO05D001877 4.2e-32 142.1 150 52.0
FAN01G1070 Fragaria x ananassa HOM05D001122 ORTHO05D001877 5.5e-32 141.7 150 52.0
CANSAT56G3130 Cannabis sativa HOM05D007902 ORTHO05D009839 7.2e-32 141.4 132 58.3
Aqoxy4G02352 Aquilegia oxysepala HOM05D007902 ORTHO05D009839 1.2e-31 140.6 179 45.8
HanXRQChr09g0251491 Helianthus annuus HOM05D007902 ORTHO05D009839 2.7e-31 139.4 152 49.3
RcHm_v2.0_Chr1g0371741 Rosa chinensis HOM05D007902 ORTHO05D009839 2.7e-31 139.4 162 49.4
Cc02_g05590 Coffea canephora HOM05D007902 ORTHO05D009839 4.7e-31 138.7 160 50.0
Lsat_1_v5_gn_9_59200 Lactuca sativa HOM05D007902 ORTHO05D009839 4.7e-31 138.7 162 48.8
MD01G1163300 Malus domestica HOM05D007902 ORTHO05D009839 4.7e-31 138.7 159 48.4
Prupe.2G261300 Prunus persica HOM05D007902 ORTHO05D009839 4.7e-31 138.7 162 48.1
Ca_06023_v3 Cicer arietinum L. HOM05D007902 ORTHO05D009839 8.0e-31 137.9 153 47.7
TWI53G0910 Tripterygium wilfordii HOM05D007902 ORTHO05D009839 1.8e-30 136.7 131 57.3
Peaxi162Scf00464g00015 Petunia axillaris HOM05D007902 ORTHO05D009839 6.8e-30 134.8 160 49.4
Hund13474 Selenicereus undatus HOM05D007902 ORTHO05D009839 1.3e-28 130.6 182 44.0
arahy.Tifrunner.gnm1.ann1.C7E7HV Arachis hypogaea HOM05D007902 ORTHO05D009839 1.7e-28 130.2 149 49.0
BcaB05g21722 Brassica carinata HOM05D007902 ORTHO05D009839 1.7e-28 130.2 162 46.9
BcaC03g13156 Brassica carinata HOM05D007902 ORTHO05D009839 1.7e-28 130.2 151 46.4
CAN.G591.5 Capsicum annuum HOM05D007902 ORTHO05D009839 1.7e-28 130.2 187 44.4
CARHR207920 Cardamine hirsuta HOM05D007902 ORTHO05D009839 2.2e-28 129.8 159 45.3
arahy.Tifrunner.gnm1.ann1.0H4UJT Arachis hypogaea HOM05D007902 ORTHO05D009839 2.8e-28 129.4 149 49.0
Thecc.10G175100 Theobroma cacao HOM05D007902 ORTHO05D009839 4.8e-28 128.6 158 50.0
Sp6g37500 Schrenkiella parvula HOM05D007902 ORTHO05D009839 8.3e-28 127.9 157 45.9
MD07G1231300 Malus domestica HOM05D007902 ORTHO05D009839 1.1e-27 127.5 160 46.9
BraA10t45132Z Brassica rapa HOM05D007902 ORTHO05D009839 1.8e-27 126.7 151 45.0
AT5G05330 Arabidopsis thaliana HOM05D007902 ORTHO05D009839 2.4e-27 126.3 158 44.3
C02p02280 Brassica napus HOM05D007902 ORTHO05D009839 2.4e-27 126.3 151 46.4
FAN06G1561 Fragaria x ananassa HOM05D007902 ORTHO05D009839 3.1e-27 125.9 151 50.3
BolC9t59901H Brassica oleracea HOM05D007902 ORTHO05D009839 5.4e-27 125.2 159 45.3
BraA02t04842Z Brassica rapa HOM05D007902 ORTHO05D009839 5.4e-27 125.2 151 45.7
EL10Ac2g04265 Beta vulgaris HOM05D007902 ORTHO05D009839 9.1e-27 124.4 144 47.9
C09p71380 Brassica napus HOM05D007902 ORTHO05D009839 1.6e-26 123.6 160 45.0
BcaC06g32241 Brassica carinata HOM05D007902 ORTHO05D009839 2.7e-26 122.9 160 45.0
Carub.0006s0425 Capsella rubella HOM05D007902 ORTHO05D009839 7.7e-26 121.3 158 43.7
AL6G15200 Arabidopsis lyrata HOM05D007902 ORTHO05D009839 1.3e-25 120.6 160 42.5
Rhsim09G0183800 Rhododendron simsii HOM05D007902 ORTHO05D009839 1.3e-25 120.6 185 41.1
Atru.chr12.150 Acer truncatum HOM05D005928 ORTHO05D007500 2.3e-25 119.8 182 44.5
PSO017G6410 Papaver somniferum HOM05D007902 ORTHO05D009839 8.6e-25 117.9 172 40.7
Sopen06g015820 Solanum pennellii HOM05D007902 ORTHO05D009839 2.5e-24 116.3 153 46.4
SalBow5G2004 Salvia bowleyana HOM05D007902 ORTHO05D009839 7.2e-24 114.8 154 44.2
BolC2t06195H Brassica oleracea HOM05D007902 ORTHO05D009839 9.5e-24 114.4 151 45.0
Thhalv10014946m.g Eutrema salsugineum HOM05D007902 ORTHO05D009839 8.0e-23 111.3 130 46.9
Nitab4.5_0002713g0030 Nicotiana tabacum HOM05D007902 ORTHO05D009839 5.2e-22 108.6 153 43.8
Medtr0191s0020 Medicago truncatula HOM05D007902 ORTHO05D009839 2.6e-21 106.3 148 42.6
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 1.7e-20 103.6 182 35.7
PGSC0003DMG400029078 Solanum tuberosum HOM05D007902 ORTHO05D009839 2.8e-20 102.8 114 50.0
Nitab4.5_0000263g0270 Nicotiana tabacum HOM05D007902 ORTHO05D009839 3.7e-20 102.4 153 42.5
unitig_52.g16781 Utricularia gibba HOM05D007902 ORTHO05D009839 5.4e-19 98.6 130 43.8
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 1.2e-18 97.4 144 42.4
CDE07G0481 Ceratophyllum demersum HOM05D007902 ORTHO05D009839 1.6e-18 97.1 132 42.4
Psat1g014880 Pisum sativum HOM05D007902 ORTHO05D009839 3.5e-18 95.9 145 40.0
PSO407G0011 Papaver somniferum HOM05D007902 ORTHO05D009839 5.9e-18 95.1 152 40.1
Oeu054429.1 Olea europaea HOM05D007902 ORTHO05D009839 8.6e-17 91.3 127 39.4
LjContig00357g0001230 Lotus japonicus HOM05D007902 ORTHO05D009839 1.1e-16 90.9 154 38.3
Sc10g0002880 Simmondsia chinensis HOM05D007902 ORTHO05D009839 5.6e-16 88.6 77 58.4
COL.COLO4_08802 Corchorus olitorius HOM05D000576 ORTHO05D000368 1.4e-14 84.0 58 72.4
TAR623G0840 Trochodendron aralioides HOM05D007902 ORTHO05D009839 2.3e-14 83.2 81 55.6
Lj1C1068T20 Lonicera japonica HOM05D007902 ORTHO05D009839 2.6e-13 79.7 81 49.4
Lj1A965T42 Lonicera japonica HOM05D007902 ORTHO05D009839 1.7e-12 77.0 80 48.8
MBI03_g40382_MAGBIO Magnolia biondii HOM05D034203 ORTHO05D009839 2.9e-12 76.3 72 45.8
SEGI_07762 Sequoiadendron giganteum HOM05D052445 ORTHO05D000541 3.2e-11 72.8 189 29.1
ATR0124G023 Amborella trichopoda HOM05D000727 ORTHO05D000541 5.4e-11 72.0 187 31.0
Os08g0101100 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 5.4e-11 72.0 147 32.0
Lalb_Chr17g0347071 Lupinus albus HOM05D007902 ORTHO05D009839 7.0e-11 71.6 83 41.0
Prupe.1G350700 Prunus persica HOM05D000727 ORTHO05D000541 1.6e-10 70.5 169 30.2
Aqoxy3G04324 Aquilegia oxysepala HOM05D000727 ORTHO05D000541 6.0e-10 68.6 166 28.3
TAR622G0466 Trochodendron aralioides HOM05D000727 ORTHO05D000541 6.0e-10 68.6 175 29.7
CsaV3_5G021890 Cucumis sativus L. HOM05D000727 ORTHO05D000541 1.7e-09 67.0 170 29.4
Thecc.02G153200 Theobroma cacao HOM05D000727 ORTHO05D000541 1.7e-09 67.0 202 30.2
ECA246G0005 Erigeron canadensis HOM05D000727 ORTHO05D000541 2.3e-09 66.6 174 29.9
Cc11_g04510 Coffea canephora HOM05D000727 ORTHO05D000541 3.0e-09 66.2 160 29.4
Duzib132G0609 Durio zibethinus HOM05D000727 ORTHO05D000541 3.0e-09 66.2 178 31.5
Duzib248G1122 Durio zibethinus HOM05D000727 ORTHO05D000541 3.9e-09 65.9 174 31.6
Nitab4.5_0002707g0040 Nicotiana tabacum HOM05D000727 ORTHO05D000541 3.9e-09 65.9 172 28.5
A03p43050 Brassica napus HOM05D007902 ORTHO05D009839 6.6e-09 65.1 79 41.8
HanXRQChr17g0540661 Helianthus annuus HOM05D000727 ORTHO05D000541 8.6e-09 64.7 178 31.5
A09p12450 Brassica napus HOM05D007902 ORTHO05D009839 1.1e-08 64.3 79 41.8
BraA07t29812Z Brassica rapa HOM05D007902 ORTHO05D009839 1.1e-08 64.3 79 41.8
PSO339G3557 Papaver somniferum HOM05D000727 ORTHO05D000541 1.1e-08 64.3 161 29.2
HPP92_014761 Vanilla planifolia HOM05D000727 ORTHO05D000541 1.5e-08 63.9 158 29.1
ECA232G2170 Erigeron canadensis HOM05D001122 ORTHO05D001877 1.9e-08 63.5 91 36.3
MBI03_g13448_MAGBIO Magnolia biondii HOM05D000727 ORTHO05D000541 2.5e-08 63.2 173 29.5
Sed0009333 Sechium edule HOM05D000727 ORTHO05D000541 2.5e-08 63.2 196 27.0
TWI53G1801 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 2.5e-08 63.2 152 28.9
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 3.3e-08 62.8 159 29.6
PSO206G0034 Papaver somniferum HOM05D000727 ORTHO05D000541 3.3e-08 62.8 161 28.6
Ciclev10016587m.g Citrus clementina HOM05D000727 ORTHO05D000541 4.3e-08 62.4 160 27.5
Dinv02932 Davidia involucrata HOM05D000727 ORTHO05D000541 4.3e-08 62.4 176 29.5
Sp2g23750 Schrenkiella parvula HOM05D000727 ORTHO05D000541 4.3e-08 62.4 160 28.8
Atru.chr11.63 Acer truncatum HOM05D000727 ORTHO05D000541 5.6e-08 62.0 180 27.8
Aa31LG11G2850 Aethionema arabicum HOM05D000727 ORTHO05D000541 5.6e-08 62.0 175 29.7
BcaC04g23495 Brassica carinata HOM05D000727 ORTHO05D000541 5.6e-08 62.0 175 26.9
BcaNung01853 Brassica carinata HOM05D003223 ORTHO05D014735 5.6e-08 62.0 51 58.8
A09p06950 Brassica napus HOM05D000727 ORTHO05D000541 5.6e-08 62.0 172 27.9
C09p07710 Brassica napus HOM05D000727 ORTHO05D000541 5.6e-08 62.0 175 26.9
BraA09t36343Z Brassica rapa HOM05D000727 ORTHO05D000541 5.6e-08 62.0 172 27.9
AUR62017747 Chenopodium quinoa HOM05D000727 ORTHO05D000541 5.6e-08 62.0 164 28.7
Medtr1g115220 Medicago truncatula HOM05D000727 ORTHO05D000541 5.6e-08 62.0 159 30.2
Gohir.D12G136500 Gossypium hirsutum HOM05D000727 ORTHO05D000541 7.3e-08 61.6 160 28.1
Gorai.008G147700 Gossypium raimondii HOM05D000727 ORTHO05D000541 7.3e-08 61.6 160 28.1
TWI74G1375 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 7.3e-08 61.6 158 29.1
Carub.0006s2120 Capsella rubella HOM05D000727 ORTHO05D000541 9.5e-08 61.2 185 27.6
Gohir.A12G133000 Gossypium hirsutum HOM05D000727 ORTHO05D000541 9.5e-08 61.2 160 28.1
GSVIVG01034361001 Vitis vinifera HOM05D000727 ORTHO05D000541 9.5e-08 61.2 192 27.1
CAN.G419.9 Capsicum annuum HOM05D000727 ORTHO05D000541 1.2e-07 60.8 158 27.8
AUR62032906 Chenopodium quinoa HOM05D000727 ORTHO05D000541 1.2e-07 60.8 164 28.7
Migut.E00666 Erythranthe guttata HOM05D000727 ORTHO05D000541 1.2e-07 60.8 178 28.1
Nn3g18557 Nelumbo nucifera HOM05D000727 ORTHO05D000541 1.6e-07 60.5 176 27.8
RhsimUnG0102400 Rhododendron simsii HOM05D000727 ORTHO05D000541 1.6e-07 60.5 182 29.1
BolC9t53688H Brassica oleracea HOM05D000727 ORTHO05D000541 2.1e-07 60.1 175 27.4
PGR044G1367 Punica granatum HOM05D000727 ORTHO05D000541 2.1e-07 60.1 180 29.4
QL01p000468 Quercus lobata HOM05D000727 ORTHO05D000541 2.1e-07 60.1 184 27.7
QL01p000554 Quercus lobata HOM05D000727 ORTHO05D000541 2.1e-07 60.1 184 27.7
Hund09512 Selenicereus undatus HOM05D000727 ORTHO05D000541 2.1e-07 60.1 177 27.1
THA.LOC104818386 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 2.1e-07 60.1 179 29.6
Ah.01g011600 Amaranthus hybridus HOM05D000727 ORTHO05D000541 3.6e-07 59.3 182 26.9
CARHR190090 Cardamine hirsuta HOM05D000727 ORTHO05D000541 3.6e-07 59.3 187 27.8
BcaNung03729 Brassica carinata HOM05D000727 ORTHO05D000541 4.7e-07 58.9 130 32.3
MD13G1001900 Malus domestica HOM05D000727 ORTHO05D000541 4.7e-07 58.9 182 26.9
SGA_v2.0_scaffold127G33972 Striga asiatica HOM05D000727 ORTHO05D000541 4.7e-07 58.9 175 28.0
Actinidia04069 Actinidia chinensis HOM05D000727 ORTHO05D000541 6.2e-07 58.5 175 26.9
AT5G23420 Arabidopsis thaliana HOM05D000727 ORTHO05D000541 6.2e-07 58.5 181 27.6
AUR62012352 Chenopodium quinoa HOM05D038520 ORTHO05D009839 6.2e-07 58.5 158 29.7
COL.COLO4_33133 Corchorus olitorius HOM05D000727 ORTHO05D000541 6.2e-07 58.5 176 28.4
DCAR_030351 Daucus carota HOM05D000727 ORTHO05D000541 6.2e-07 58.5 163 30.1
SEGI_37508 Sequoiadendron giganteum HOM05D000727 ORTHO05D000541 8.0e-07 58.2 196 26.5
Sopen04g004000 Solanum pennellii HOM05D000727 ORTHO05D000541 8.0e-07 58.2 165 30.3
Cfa018677 Carpinus fangiana HOM05D000727 ORTHO05D000541 1.1e-06 57.8 178 28.1
Haze_17405 Corylus avellana HOM05D000727 ORTHO05D000541 1.1e-06 57.8 177 27.7
Glyma.20G100600 Glycine max HOM05D000727 ORTHO05D000541 1.1e-06 57.8 178 28.1
Oeu036108.1 Olea europaea HOM05D000727 ORTHO05D000541 1.1e-06 57.8 179 28.5
PGSC0003DMG400025304 Solanum tuberosum HOM05D000727 ORTHO05D000541 1.1e-06 57.8 165 29.7
AL6G34700 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 1.4e-06 57.4 180 27.8
BcaB04g19869 Brassica carinata HOM05D000727 ORTHO05D000541 1.4e-06 57.4 150 27.3
Thhalv10004817m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 1.4e-06 57.4 170 24.7
FAN07G1889 Fragaria x ananassa HOM05D000727 ORTHO05D000541 1.4e-06 57.4 174 28.2
Glyma.10G288300 Glycine max HOM05D000727 ORTHO05D000541 1.8e-06 57.0 162 27.8
A02p40980 Brassica napus HOM05D000727 ORTHO05D000541 2.3e-06 56.6 160 27.5
Hma1.2p1_0513F.1_g169510 Hydrangea macrophylla HOM05D000727 ORTHO05D000541 2.3e-06 56.6 179 26.8
Lalb_Chr02g0144141 Lupinus albus HOM05D000727 ORTHO05D000541 2.3e-06 56.6 178 28.1
BraA02t09046Z Brassica rapa HOM05D000727 ORTHO05D000541 3.1e-06 56.2 184 27.2
Eucgr.J00336 Eucalyptus grandis HOM05D000727 ORTHO05D000541 3.1e-06 56.2 185 27.6
Pp3c17_7580 Physcomitrium patens HOM05D000727 ORTHO05D000541 3.1e-06 56.2 182 28.0
Solyc04g008820.3 Solanum lycopersicum HOM05D000727 ORTHO05D000541 4.0e-06 55.8 190 26.3
VMungo0720G2558 Vigna mungo HOM05D000727 ORTHO05D000541 4.0e-06 55.8 182 28.6
MSTRG.2077 Avicennia marina HOM05D000727 ORTHO05D000541 5.2e-06 55.5 177 26.6
SalBow2G1580 Salvia bowleyana HOM05D000727 ORTHO05D000541 5.2e-06 55.5 160 27.5
Dinv17654 Davidia involucrata HOM05D000727 ORTHO05D000541 6.8e-06 55.1 176 28.4
FAN17G1781 Fragaria x ananassa HOM05D000727 ORTHO05D000541 6.8e-06 55.1 174 27.6
MBI18_g32335_MAGBIO Magnolia biondii HOM05D034203 ORTHO05D009839 6.8e-06 55.1 64 39.1
ClCG01G007990 Citrullus lanatus HOM05D000727 ORTHO05D000541 8.9e-06 54.7 157 28.0
FvH4_4g37280 Fragaria vesca HOM05D000727 ORTHO05D000541 8.9e-06 54.7 180 26.1
Phvul.007G012700 Phaseolus vulgaris HOM05D000727 ORTHO05D000541 8.9e-06 54.7 178 27.5


User provided reference genes

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