Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G03069 Eucalyptus grandis HOM05D007530 ORTHO05D009556 7.5e-33 143.3 73 100.0
Nn2g13162 Nelumbo nucifera HOM05D007530 ORTHO05D009556 7.0e-15 83.6 46 80.4
THA.LOC109117252 Tarenaya hassleriana HOM05D007530 ORTHO05D009556 7.0e-15 83.6 46 80.4
Medtr7g068940 Medicago truncatula HOM05D007530 ORTHO05D009556 5.9e-14 80.5 45 82.2
Nitab4.5_0000770g0040 Nicotiana tabacum HOM05D007530 ORTHO05D009556 5.9e-14 80.5 44 81.8
arahy.Tifrunner.gnm1.ann1.88RA0A Arachis hypogaea HOM05D007530 ORTHO05D009556 7.8e-14 80.1 45 80.0
arahy.Tifrunner.gnm1.ann1.R0LR40 Arachis hypogaea HOM05D007530 ORTHO05D009556 7.8e-14 80.1 45 80.0
arahy.Tifrunner.gnm1.ann1.ZMF41F Arachis hypogaea HOM05D007530 ORTHO05D009556 7.8e-14 80.1 45 80.0
Manes.08G093800 Manihot esculenta HOM05D007530 ORTHO05D009556 7.8e-14 80.1 46 76.1
Manes.09G107300 Manihot esculenta HOM05D007530 ORTHO05D009556 7.8e-14 80.1 46 76.1
Rhsim05G0217200 Rhododendron simsii HOM05D000043 ORTHO05D005398 7.8e-14 80.1 43 83.7
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 1.0e-13 79.7 43 83.7
Solyc10g085215.1 Solanum lycopersicum HOM05D007530 ORTHO05D009556 1.0e-13 79.7 44 79.5
Sopen10g034690 Solanum pennellii HOM05D007530 ORTHO05D009556 1.0e-13 79.7 44 79.5
Nitab4.5_0004107g0030 Nicotiana tabacum HOM05D007530 ORTHO05D009556 1.3e-13 79.3 44 79.5
Potri.006G101901 Populus trichocarpa HOM05D007530 ORTHO05D009556 1.3e-13 79.3 46 73.9
Sc01g0006890 Simmondsia chinensis HOM05D007530 ORTHO05D009556 1.3e-13 79.3 45 80.0
Ca_07655_v3 Cicer arietinum L. HOM05D007530 ORTHO05D009556 2.3e-13 78.6 45 77.8
Nitab4.5_0003514g0010 Nicotiana tabacum HOM05D007530 ORTHO05D009556 2.3e-13 78.6 44 77.3
Psat3g126880 Pisum sativum HOM05D007530 ORTHO05D009556 2.3e-13 78.6 45 77.8
Hund10987 Selenicereus undatus HOM05D007530 ORTHO05D009556 2.3e-13 78.6 46 78.3
SalBow4G2966 Salvia bowleyana HOM05D007530 ORTHO05D009556 3.9e-13 77.8 44 75.0
CANSAT35G1517 Cannabis sativa HOM05D007530 ORTHO05D009556 6.6e-13 77.0 46 71.7
Sabra06G0078200 Salix brachista HOM05D007530 ORTHO05D009556 6.6e-13 77.0 46 71.7
TAR623G0260 Trochodendron aralioides HOM05D007530 ORTHO05D009556 6.6e-13 77.0 43 83.7
GSVIVG01011181001 Vitis vinifera HOM05D007530 ORTHO05D009556 6.6e-13 77.0 43 79.1
Cc06_g01140 Coffea canephora HOM05D007530 ORTHO05D009556 8.6e-13 76.6 41 82.9
Nitab4.5_0000444g0050 Nicotiana tabacum HOM05D007530 ORTHO05D009556 1.1e-12 76.3 44 75.0
Thecc.05G013400 Theobroma cacao HOM05D007530 ORTHO05D009556 1.1e-12 76.3 46 73.9
Aa31LG5G18900 Aethionema arabicum HOM05D007530 ORTHO05D009556 1.5e-12 75.9 46 71.7
CiPaw.10G157500 Carya illinoinensis HOM05D007530 ORTHO05D009556 1.5e-12 75.9 43 76.7
Hma1.2p1_0362F.1_g136440 Hydrangea macrophylla HOM05D007530 ORTHO05D009556 1.5e-12 75.9 44 77.3
Potri.016G118800 Populus trichocarpa HOM05D007530 ORTHO05D009556 1.5e-12 75.9 43 76.7
PGSC0003DMG400011024 Solanum tuberosum HOM05D007530 ORTHO05D009556 1.5e-12 75.9 44 75.0
PGR142G0763 Punica granatum HOM05D007530 ORTHO05D009556 1.9e-12 75.5 46 73.9
Duzib106G1059 Durio zibethinus HOM05D007530 ORTHO05D009556 4.3e-12 74.3 46 71.7
Lalb_Chr01g0023151 Lupinus albus HOM05D007530 ORTHO05D009556 4.3e-12 74.3 41 78.0
Lalb_Chr19g0124461 Lupinus albus HOM05D007530 ORTHO05D009556 4.3e-12 74.3 41 78.0
CSS0025168 Camellia sinensis var. sinensis HOM05D007530 ORTHO05D009556 5.6e-12 73.9 43 76.7
Gohir.A04G092400 Gossypium hirsutum HOM05D007530 ORTHO05D009556 5.6e-12 73.9 44 75.0
Gohir.D04G131700 Gossypium hirsutum HOM05D007530 ORTHO05D009556 5.6e-12 73.9 44 75.0
Gorai.012G115500 Gossypium raimondii HOM05D007530 ORTHO05D009556 5.6e-12 73.9 44 75.0
Duzib093G1475 Durio zibethinus HOM05D007530 ORTHO05D009556 7.3e-12 73.6 46 69.6
Migut.L02025 Erythranthe guttata HOM05D007530 ORTHO05D009556 7.3e-12 73.6 44 70.5
Thhalv10015199m.g Eutrema salsugineum HOM05D007530 ORTHO05D009556 1.2e-11 72.8 44 75.0
Glyma.16G098900 Glycine max HOM05D007530 ORTHO05D009556 1.2e-11 72.8 44 79.5
MBI15_g24380_MAGBIO Magnolia biondii HOM05D007530 ORTHO05D009556 1.2e-11 72.8 43 74.4
AL6G10780 Arabidopsis lyrata HOM05D007530 ORTHO05D009556 1.6e-11 72.4 44 77.3
AT5G01350 Arabidopsis thaliana HOM05D007530 ORTHO05D009556 1.6e-11 72.4 44 77.3
Carub.0006s0047 Capsella rubella HOM05D007530 ORTHO05D009556 1.6e-11 72.4 44 77.3
ClCG10G022290 Citrullus lanatus HOM05D007530 ORTHO05D009556 1.6e-11 72.4 43 74.4
Glyma.18G203200 Glycine max HOM05D007530 ORTHO05D009556 1.6e-11 72.4 44 77.3
Phvul.008G096700 Phaseolus vulgaris HOM05D007530 ORTHO05D009556 2.1e-11 72.0 44 77.3
Sp6g40660 Schrenkiella parvula HOM05D007530 ORTHO05D009556 2.1e-11 72.0 44 72.7
PGSC0003DMG400019174 Solanum tuberosum HOM05D007530 ORTHO05D009556 2.8e-11 71.6 44 70.5
unitig_37.g12653 Utricularia gibba HOM05D007530 ORTHO05D009556 2.8e-11 71.6 45 71.1
BcaB01g06225 Brassica carinata HOM05D007530 ORTHO05D009556 3.6e-11 71.2 44 72.7
A03p00350 Brassica napus HOM05D000406 ORTHO05D006918 3.6e-11 71.2 44 72.7
C03p00510 Brassica napus HOM05D000406 ORTHO05D006918 3.6e-11 71.2 44 72.7
BolC3t12617H Brassica oleracea HOM05D000406 ORTHO05D006918 3.6e-11 71.2 44 72.7
BraA03t09426Z Brassica rapa HOM05D000406 ORTHO05D006918 3.6e-11 71.2 44 72.7
HPP92_021352 Vanilla planifolia HOM05D007530 ORTHO05D009556 3.6e-11 71.2 43 76.7
EL10Ac5g12543 Beta vulgaris HOM05D007530 ORTHO05D009556 6.1e-11 70.5 45 68.9
CARHR211730 Cardamine hirsuta HOM05D007530 ORTHO05D009556 6.1e-11 70.5 44 72.7
Glyma.07G152100 Glycine max HOM05D007530 ORTHO05D009556 8.0e-11 70.1 44 77.3
Sed0024664 Sechium edule HOM05D007530 ORTHO05D009556 8.0e-11 70.1 43 69.8
HPP92_021347 Vanilla planifolia HOM05D007530 ORTHO05D009556 1.0e-10 69.7 43 74.4
Aa31LG1G23010 Aethionema arabicum HOM05D007530 ORTHO05D009556 1.8e-10 68.9 46 69.6
CsaV3_3G033590 Cucumis sativus L. HOM05D007530 ORTHO05D009556 1.8e-10 68.9 43 69.8
PSO384G0267 Papaver somniferum HOM05D007530 ORTHO05D009556 1.8e-10 68.9 44 75.0
MELO3C009149.2 Cucumis melo HOM05D007530 ORTHO05D009556 3.1e-10 68.2 43 67.4
ECA247G1901 Erigeron canadensis HOM05D007530 ORTHO05D009556 3.1e-10 68.2 45 68.9
HanXRQChr10g0294071 Helianthus annuus HOM05D007530 ORTHO05D009556 5.2e-10 67.4 46 67.4
Lsat_1_v5_gn_9_35161 Lactuca sativa HOM05D007530 ORTHO05D009556 5.2e-10 67.4 47 63.8
Prupe.6G279800 Prunus persica HOM05D007530 ORTHO05D009556 6.8e-10 67.0 47 66.0
FvH4_6g11210 Fragaria vesca HOM05D007530 ORTHO05D009556 8.9e-10 66.6 44 65.9
FAN02G2108 Fragaria x ananassa HOM05D007530 ORTHO05D009556 8.9e-10 66.6 44 65.9
FAN05G2692 Fragaria x ananassa HOM05D007530 ORTHO05D009556 8.9e-10 66.6 44 65.9
FAN09G3168 Fragaria x ananassa HOM05D007530 ORTHO05D009556 8.9e-10 66.6 44 65.9
FAN14G2496 Fragaria x ananassa HOM05D007530 ORTHO05D009556 8.9e-10 66.6 44 65.9
FAN14G3881 Fragaria x ananassa HOM05D007530 ORTHO05D009556 8.9e-10 66.6 44 65.9
RcHm_v2.0_Chr3g0462691 Rosa chinensis HOM05D007530 ORTHO05D009556 8.9e-10 66.6 44 65.9
COL.COLO4_14508 Corchorus olitorius HOM05D002620 ORTHO05D006469 1.2e-09 66.2 44 63.6
TWI74G1090 Tripterygium wilfordii HOM05D007530 ORTHO05D009556 1.5e-09 65.9 46 65.2
TPR.G2527 Trifolium pratense HOM05D007530 ORTHO05D009556 3.4e-09 64.7 43 69.8
ATR0681G213 Amborella trichopoda HOM05D007530 ORTHO05D009556 4.4e-09 64.3 44 72.7
Aqoxy2G00850 Aquilegia oxysepala HOM05D007530 ORTHO05D009556 5.8e-09 63.9 46 60.9
Haze_21023 Corylus avellana HOM05D002620 ORTHO05D006469 3.7e-08 61.2 65 49.2
Mapoly0015s0144 Marchantia polymorpha HOM05D007530 ORTHO05D009556 1.9e-07 58.9 43 62.8
MD12G1171600 Malus domestica HOM05D007530 ORTHO05D009556 2.4e-07 58.5 43 62.8
Pp3c21_22550 Physcomitrium patens HOM05D007530 ORTHO05D009556 3.2e-07 58.2 43 58.1
Os04g0508100 Oryza sativa ssp. japonica HOM05D007530 ORTHO05D009556 4.1e-07 57.8 41 65.9
Zm00001eb426270 Zea mays HOM05D007530 ORTHO05D009556 1.6e-06 55.8 43 62.8
AagrBONN_evm.TU.Sc2ySwM_117.3278 Anthoceros agrestis HOM05D007530 ORTHO05D009556 6.0e-06 53.9 43 58.1
Peaxi162Scf00009g01523 Petunia axillaris HOM05D007530 ORTHO05D009556 7.8e-06 53.5 26 92.3
Zm00001eb077870 Zea mays HOM05D007530 ORTHO05D009556 7.8e-06 53.5 37 64.9


User provided reference genes

Program Settings