Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.2e-237 825.5 503 100.0
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 5.4e-90 335.9 336 58.6
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 1.5e-87 327.8 336 57.4
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 2.1e-86 323.9 338 55.3
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 4.0e-85 319.7 324 56.5
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 5.2e-85 319.3 337 56.1
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 3.4e-84 316.6 330 56.1
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 5.8e-84 315.8 337 52.8
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 9.9e-84 315.1 336 53.9
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 1.3e-83 314.7 339 54.9
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 2.2e-83 313.9 337 54.3
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.9e-83 313.5 337 54.6
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 6.4e-83 312.4 337 53.4
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 8.4e-83 312.0 337 54.3
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.4e-82 311.2 324 54.9
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 1.9e-82 310.8 325 54.8
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 1.9e-82 310.8 324 55.2
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 1.9e-82 310.8 337 53.1
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 5.4e-82 309.3 337 52.5
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 9.2e-82 308.5 312 56.1
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 9.2e-82 308.5 324 54.3
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 1.2e-81 308.1 337 52.5
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 1.2e-81 308.1 337 51.3
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.1e-81 307.4 324 54.6
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 4.6e-81 306.2 337 53.1
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 4.6e-81 306.2 337 54.0
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 6.0e-81 305.8 338 52.1
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 6.0e-81 305.8 337 53.1
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 7.8e-81 305.4 337 52.5
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 1.3e-80 304.7 337 53.4
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 1.7e-80 304.3 337 53.4
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 3.0e-80 303.5 344 52.0
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 8.7e-80 302.0 337 52.5
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 8.7e-80 302.0 325 52.9
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.1e-79 301.6 337 54.0
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.1e-79 301.6 340 52.1
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.9e-79 300.8 312 55.4
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.9e-79 300.8 339 50.7
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.3e-79 300.1 337 53.4
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 3.3e-79 300.1 341 53.4
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.3e-79 299.7 337 53.1
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 4.3e-79 299.7 325 53.8
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 3.6e-78 296.6 337 50.7
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 6.2e-78 295.8 337 51.0
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.1e-77 295.0 337 52.5
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 1.1e-77 295.0 338 49.7
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.4e-77 294.7 336 53.0
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.8e-77 294.3 336 50.9
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.4e-77 293.9 336 53.0
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 4.0e-77 293.1 338 52.1
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 5.2e-77 292.7 280 57.1
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 9.0e-77 292.0 337 52.5
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.2e-76 291.6 336 52.7
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 1.2e-76 291.6 339 51.3
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.5e-76 291.2 337 51.0
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 2.0e-76 290.8 317 52.4
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.6e-76 290.4 337 51.9
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 4.4e-76 289.7 336 49.4
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 4.4e-76 289.7 337 50.7
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 8.4e-75 285.4 337 50.7
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 4.2e-74 283.1 277 54.9
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 5.4e-74 282.7 337 50.1
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 1.2e-73 281.6 338 49.1
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 3.0e-72 276.9 337 49.6
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 1.1e-71 275.0 336 49.1
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.3e-70 271.6 327 48.0
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 1.6e-70 271.2 341 48.1
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 2.8e-70 270.4 340 48.2
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 1.8e-69 267.7 317 50.8
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 2.4e-69 267.3 338 46.7
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 3.1e-69 266.9 338 45.3
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.1e-69 266.9 274 52.6
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.2e-68 265.0 278 52.5
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 9.9e-68 261.9 277 50.2
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 9.9e-68 261.9 337 45.1
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 2.2e-67 260.8 337 46.9
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 6.4e-67 259.2 311 48.9
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 3.2e-66 256.9 336 46.7
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.2e-65 255.0 330 46.7
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 2.1e-65 254.2 340 46.2
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 2.7e-65 253.8 343 46.4
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 4.6e-65 253.1 330 46.7
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 6.0e-65 252.7 330 47.0
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 1.0e-64 251.9 302 49.7
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 5.1e-64 249.6 317 47.3
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 8.7e-64 248.8 331 46.5
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 4.3e-63 246.5 337 45.1
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 9.6e-63 245.4 274 50.4
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.6e-62 244.6 274 50.0
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.6e-62 244.6 347 44.1
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.8e-62 243.8 336 45.8
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.8e-62 243.8 336 46.4
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.5e-60 238.0 261 50.6
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 4.5e-60 236.5 305 43.6
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.3e-59 235.0 329 45.6
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 2.9e-59 233.8 347 42.4
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 2.9e-59 233.8 338 43.2
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 3.8e-59 233.4 338 44.1
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 3.8e-59 233.4 337 43.9
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 6.4e-59 232.6 289 46.7
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 1.9e-58 231.1 338 44.1
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 2.4e-58 230.7 338 44.4
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 7.1e-58 229.2 305 46.6
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.2e-57 228.4 305 46.6
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 1.2e-57 228.4 284 47.2
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 2.1e-57 227.6 340 44.1
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 2.7e-57 227.3 338 43.8
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 4.6e-57 226.5 337 43.3
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 4.6e-57 226.5 325 42.2
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 6.0e-57 226.1 338 43.8
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 7.9e-57 225.7 339 44.2
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 7.9e-57 225.7 287 46.3
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 1.8e-56 224.6 248 49.2
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 1.8e-56 224.6 284 45.1
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 3.0e-56 223.8 338 43.2
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 5.1e-56 223.0 342 41.8
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 8.7e-56 222.2 339 45.1
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 8.7e-56 222.2 307 44.0
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 2.5e-55 220.7 337 43.3
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 4.3e-55 219.9 345 41.2
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 7.4e-55 219.2 337 40.9
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 7.4e-55 219.2 338 43.5
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.3e-54 218.4 337 43.0
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 1.6e-54 218.0 337 41.8
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 2.8e-54 217.2 346 42.2
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 4.8e-54 216.5 338 39.6
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 2.4e-53 214.2 341 40.8
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.1e-53 213.8 276 44.9
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 6.9e-53 212.6 337 40.9
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 6.9e-53 212.6 337 40.9
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 9.0e-53 212.2 338 42.9
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 1.2e-52 211.8 337 40.7
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 3.4e-52 210.3 292 43.5
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 3.4e-52 210.3 183 61.7
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 5.8e-52 209.5 338 42.6
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 5.8e-52 209.5 334 40.1
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 7.6e-52 209.1 338 42.3
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-51 208.4 338 42.3
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-51 208.4 338 42.3
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 2.9e-51 207.2 292 43.2
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 6.5e-51 206.1 292 42.8
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 6.5e-51 206.1 292 42.8
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 8.4e-51 205.7 337 39.5
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 8.4e-51 205.7 275 42.9
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.4e-50 204.9 262 46.2
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 1.9e-50 204.5 337 39.2
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 2.5e-50 204.1 338 38.5
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.7e-49 200.7 271 41.0
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 8.7e-48 195.7 280 38.9
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.8e-46 190.7 280 38.9
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.7e-46 190.3 280 38.2
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 5.9e-44 183.0 169 59.2
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 5.9e-44 183.0 169 59.2
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.0e-43 179.9 279 37.6
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.5e-39 168.3 279 36.9
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 8.2e-38 162.5 226 45.6
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 3.4e-36 157.1 337 35.9
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.7e-19 101.7 120 48.3
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 8.0e-17 92.8 120 47.5
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 4.8e-14 83.6 149 37.6
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 8.5e-11 72.8 154 36.4
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 4.0e-08 63.9 99 36.4
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 2.2e-06 58.2 61 42.6
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 2.8e-06 57.8 61 42.6


User provided reference genes

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