Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 0.0e+00 1317.4 696 100.0
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 4.4e-191 672.2 656 61.3
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 4.9e-190 668.7 705 56.3
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 7.3e-186 654.8 672 56.4
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 2.3e-184 649.8 651 56.7
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 2.9e-182 642.9 673 53.8
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 2.1e-180 636.7 701 54.2
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 3.5e-180 636.0 700 54.3
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 6.0e-180 635.2 709 54.4
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 3.0e-179 632.9 668 55.4
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 8.6e-179 631.3 704 53.7
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 1.4e-176 624.0 694 53.7
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 1.8e-176 623.6 699 54.5
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 2.3e-176 623.2 657 54.3
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 3.1e-176 622.9 702 54.3
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 2.0e-175 620.2 656 55.6
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 5.8e-175 618.6 699 53.4
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 1.7e-174 617.1 687 53.7
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 1.7e-174 617.1 678 53.5
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 1.4e-173 614.0 705 54.0
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.9e-173 613.6 676 55.3
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.4e-173 613.2 626 54.8
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 3.2e-173 612.8 656 53.0
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.2e-172 610.9 676 55.2
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 2.1e-172 610.1 657 53.1
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.7e-171 607.1 656 52.4
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 2.3e-171 606.7 701 53.5
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 3.0e-171 606.3 678 55.8
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 3.0e-171 606.3 678 55.8
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 3.0e-171 606.3 636 56.1
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.9e-170 603.6 704 53.8
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 2.5e-170 603.2 732 50.4
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 5.6e-170 602.1 675 54.2
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 4.7e-169 599.0 702 53.7
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 5.2e-168 595.5 703 51.9
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.3e-166 590.9 696 52.4
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 1.6e-164 583.9 614 56.0
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.5e-162 576.6 707 48.8
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 2.1e-161 573.5 708 51.3
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 2.2e-158 563.5 645 51.6
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 6.0e-156 555.4 689 49.5
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 5.1e-155 552.4 674 51.2
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 6.6e-155 552.0 614 53.3
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.5e-154 550.8 613 53.3
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 2.5e-154 550.1 663 51.4
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.4e-152 544.3 673 50.1
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 1.4e-152 544.3 608 52.6
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 1.8e-152 543.9 689 50.7
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 1.3e-150 537.7 677 50.7
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 2.2e-150 537.0 665 51.7
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 5.4e-149 532.3 731 46.8
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 6.0e-148 528.9 670 50.7
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 1.8e-147 527.3 669 48.7
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 2.3e-147 526.9 626 50.0
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 3.9e-147 526.2 681 49.6
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 8.7e-147 525.0 693 47.3
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 3.3e-146 523.1 656 49.2
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 1.3e-145 521.2 744 46.5
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 2.8e-145 520.0 657 49.2
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 9.0e-144 515.0 652 49.8
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 1.5e-143 514.2 721 46.3
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 1.3e-142 511.1 665 47.8
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.3e-142 511.1 716 45.5
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 3.8e-142 509.6 615 51.1
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 7.9e-140 501.9 706 47.7
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.3e-139 501.1 690 47.5
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.3e-139 500.4 729 46.4
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 1.5e-138 497.7 570 51.9
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 3.3e-138 496.5 570 53.3
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 1.3e-137 494.6 771 43.1
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 4.0e-136 489.6 517 55.1
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 3.4e-135 486.5 620 49.0
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 5.8e-135 485.7 616 48.2
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 1.3e-134 484.6 684 45.9
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 2.2e-134 483.8 579 50.3
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 2.9e-134 483.4 683 48.2
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 2.9e-134 483.4 579 50.1
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 2.5e-133 480.3 676 46.9
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 2.5e-130 470.3 613 48.3
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 7.4e-130 468.8 653 47.6
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 1.3e-129 468.0 719 45.9
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 2.8e-129 466.8 689 45.4
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 1.4e-128 464.5 696 44.1
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 2.9e-126 456.8 678 44.0
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 9.7e-122 441.8 678 42.9
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.8e-120 437.6 619 46.4
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 7.7e-119 432.2 647 44.8
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 2.2e-118 430.6 662 45.2
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 5.1e-115 419.5 699 42.5
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 1.5e-114 417.9 670 43.3
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 9.7e-114 415.2 677 40.6
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 1.1e-112 411.8 603 45.4
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 1.8e-112 411.0 688 41.9
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 3.1e-112 410.2 666 43.7
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 7.0e-112 409.1 658 42.9
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 6.3e-105 386.0 556 46.2
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 8.2e-105 385.6 620 43.2
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 1.2e-103 381.7 668 41.9
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 3.5e-103 380.2 640 41.7
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 3.5e-103 380.2 640 41.7
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 2.1e-100 370.9 716 39.4
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 1.0e-99 368.6 504 48.0
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 2.0e-95 354.4 616 41.6
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 2.9e-94 350.5 706 38.8
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 9.4e-93 345.5 531 43.7
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 1.6e-92 344.7 628 42.2
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 1.0e-91 342.0 460 48.0
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 9.8e-90 335.5 578 41.9
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 3.7e-89 333.6 508 42.9
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 4.5e-87 326.6 495 45.1
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 2.5e-85 320.9 603 39.1
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 4.4e-82 310.1 235 65.1
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 1.0e-75 288.9 487 41.7
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 2.5e-69 267.7 617 37.6
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 9.5e-69 265.8 192 68.8
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 3.2e-64 250.8 534 36.3
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 9.5e-61 239.2 262 51.1
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 5.1e-54 216.9 258 47.3
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 4.0e-51 207.2 266 45.1
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 3.0e-46 191.0 283 39.9
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 6.2e-44 183.3 214 48.6
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 1.8e-43 181.8 201 44.3
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 4.4e-42 177.2 165 60.6
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 5.8e-42 176.8 133 66.2
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 1.3e-41 175.6 455 33.6
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 4.3e-37 160.6 437 34.6
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 6.2e-36 156.8 122 62.3
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 4.0e-35 154.1 237 41.8
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 5.3e-35 153.7 282 38.7
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 4.9e-33 147.1 163 52.1
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 2.4e-32 144.8 133 59.4
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 7.9e-31 139.8 144 58.3
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 1.3e-30 139.0 137 54.7
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 1.5e-29 135.6 130 56.9
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 2.9e-25 121.3 186 45.2
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 2.7e-23 114.8 86 67.4
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 3.0e-22 111.3 430 30.5
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 1.1e-19 102.8 74 62.2
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 5.5e-16 90.5 124 47.6
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 7.9e-15 86.7 73 56.2
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 9.7e-13 79.7 79 50.6
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 3.7e-12 77.8 59 62.7
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 2.2e-09 68.6 48 70.8
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 3.2e-08 64.7 126 42.9
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 3.6e-07 61.2 42 61.9
Oeu061605.1 Olea europaea HOM05D004806 ORTHO05D005397 6.1e-07 60.5 55 49.1
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 5.1e-06 57.4 438 23.7
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 6.7e-06 57.0 55 52.7
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 6.7e-06 57.0 51 56.9


User provided reference genes

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