Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 7.4e-42 173.3 80 100.0
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 2.5e-37 158.3 80 90.0
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.0e-14 83.2 74 52.7
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.0e-14 83.2 74 52.7
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 6.5e-14 80.5 71 53.5
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 4.2e-13 77.8 80 50.0
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.6e-12 75.9 75 49.3
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 2.7e-12 75.1 81 45.7
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 2.7e-12 75.1 78 47.4
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.7e-12 74.3 76 50.0
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 6.1e-12 73.9 75 45.3
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 6.1e-12 73.9 68 52.9
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 1.0e-11 73.2 76 44.7
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.8e-11 72.4 74 50.0
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 3.0e-11 71.6 80 50.0
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 3.0e-11 71.6 76 48.7
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 4.0e-11 71.2 72 47.2
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 8.8e-11 70.1 70 50.0
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.1e-10 69.7 68 48.5
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 4.4e-10 67.8 69 49.3
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 4.4e-10 67.8 78 44.9
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 5.7e-10 67.4 73 46.6
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.7e-10 67.4 79 44.3
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.7e-10 67.4 79 44.3
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 5.7e-10 67.4 79 44.3
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 7.5e-10 67.0 83 42.2
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 1.7e-09 65.9 43 58.1
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 1.7e-09 65.9 69 47.8
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.2e-09 65.5 71 47.9
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 2.2e-09 65.5 67 49.3
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 2.2e-09 65.5 68 42.6
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 2.2e-09 65.5 68 42.6
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 2.2e-09 65.5 69 42.0
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.2e-09 65.5 74 45.9
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 2.2e-09 65.5 79 38.0
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 2.8e-09 65.1 90 45.6
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 2.8e-09 65.1 68 42.6
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 2.8e-09 65.1 68 41.2
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 2.8e-09 65.1 68 41.2
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 3.7e-09 64.7 69 44.9
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 3.7e-09 64.7 57 54.4
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 3.7e-09 64.7 77 42.9
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 3.7e-09 64.7 80 38.8
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.7e-09 64.7 75 48.0
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 3.7e-09 64.7 75 48.0
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 4.8e-09 64.3 81 42.0
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 4.8e-09 64.3 68 39.7
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 4.8e-09 64.3 68 41.2
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 8.2e-09 63.5 70 44.3
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 8.2e-09 63.5 83 39.8
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 8.2e-09 63.5 75 37.3
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 8.2e-09 63.5 68 42.6
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 8.2e-09 63.5 69 44.9
Cpa.g.sc19.256 Carica papaya HOM05D006892 ORTHO05D008592 1.4e-08 62.8 74 43.2
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 1.8e-08 62.4 68 42.6
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 1.8e-08 62.4 68 42.6
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 1.8e-08 62.4 76 43.4
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 1.8e-08 62.4 79 40.5
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.4e-08 62.0 44 61.4
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 2.4e-08 62.0 82 40.2
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 2.4e-08 62.0 68 39.7
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 2.4e-08 62.0 68 42.6
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 3.1e-08 61.6 79 46.8
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 3.1e-08 61.6 68 39.7
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 3.1e-08 61.6 77 42.9
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 4.1e-08 61.2 36 63.9
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 5.3e-08 60.8 74 47.3
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 5.3e-08 60.8 44 61.4
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 5.3e-08 60.8 69 42.0
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 7.0e-08 60.5 79 41.8
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 7.0e-08 60.5 37 64.9
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 7.0e-08 60.5 70 40.0
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 1.2e-07 59.7 71 35.2
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 1.2e-07 59.7 68 42.6
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 1.2e-07 59.7 69 43.5
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 2.0e-07 58.9 47 53.2
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.0e-07 58.9 80 38.8
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.0e-07 58.9 77 41.6
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.7e-07 58.5 72 44.4
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 4.5e-07 57.8 84 38.1
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 4.5e-07 57.8 38 55.3
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 5.9e-07 57.4 81 40.7
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 7.7e-07 57.0 79 35.4
arahy.Tifrunner.gnm1.ann1.J5YN7E Arachis hypogaea HOM05D006892 ORTHO05D008592 1.0e-06 56.6 78 37.2
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 1.0e-06 56.6 46 54.3
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 1.0e-06 56.6 46 54.3
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.3e-06 56.2 67 40.3
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 1.7e-06 55.8 79 39.2
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 1.7e-06 55.8 67 40.3
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 1.7e-06 55.8 85 37.6
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 1.7e-06 55.8 47 53.2
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 2.2e-06 55.5 73 41.1
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 2.9e-06 55.1 40 52.5
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.9e-06 55.1 39 56.4
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.9e-06 55.1 43 53.5
TPR.G33720 Trifolium pratense HOM05D006892 ORTHO05D008592 2.9e-06 55.1 37 59.5
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 3.8e-06 54.7 43 51.2
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 3.8e-06 54.7 40 52.5
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 3.8e-06 54.7 73 42.5
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 3.8e-06 54.7 46 50.0
arahy.Tifrunner.gnm1.ann1.F5D7CA Arachis hypogaea HOM05D006892 ORTHO05D008592 6.5e-06 53.9 78 35.9
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 6.5e-06 53.9 79 39.2
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 8.5e-06 53.5 82 36.6


User provided reference genes

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