Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02933 Eucalyptus grandis HOM05D004167 ORTHO05D005012 3.3e-192 674.9 336 100.0
TWI15G0568 Tripterygium wilfordii HOM05D004167 ORTHO05D005012 4.6e-162 574.7 336 81.8
PGR142G3800 Punica granatum HOM05D004167 ORTHO05D005012 3.3e-160 568.5 333 80.5
QL08p059807 Quercus lobata HOM05D004167 ORTHO05D005012 3.3e-160 568.5 333 81.4
Potri.008G055700 Populus trichocarpa HOM05D004167 ORTHO05D005012 4.3e-160 568.2 336 81.8
Potri.010G204000 Populus trichocarpa HOM05D004167 ORTHO05D005012 2.1e-159 565.8 336 80.4
Atru.chr12.475 Acer truncatum HOM05D004167 ORTHO05D005012 1.4e-158 563.1 333 81.4
Atru.chr12.453 Acer truncatum HOM05D004167 ORTHO05D005012 1.8e-158 562.8 333 81.4
Cfa001475 Carpinus fangiana HOM05D004167 ORTHO05D005012 1.8e-158 562.8 331 82.2
Gohir.A05G301600 Gossypium hirsutum HOM05D004167 ORTHO05D005012 4.0e-158 561.6 336 80.7
Thecc.10G042500 Theobroma cacao HOM05D004167 ORTHO05D005012 4.0e-158 561.6 336 80.1
Gorai.009G319400 Gossypium raimondii HOM05D004167 ORTHO05D005012 6.9e-158 560.8 336 80.4
Gohir.D05G301300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 5.8e-157 557.8 336 80.1
Ciclev10032053m.g Citrus clementina HOM05D004167 ORTHO05D005012 1.3e-156 556.6 336 78.3
CiPaw.02G183800 Carya illinoinensis HOM05D004167 ORTHO05D005012 1.7e-156 556.2 336 80.1
Prupe.2G235200 Prunus persica HOM05D004167 ORTHO05D005012 6.5e-156 554.3 333 80.5
Nitab4.5_0010256g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 1.6e-154 549.7 336 77.7
Gohir.D10G228300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 1.8e-153 546.2 336 78.9
Oeu064382.1 Olea europaea HOM05D004167 ORTHO05D005012 3.9e-153 545.0 336 76.8
Dinv03048 Davidia involucrata HOM05D004167 ORTHO05D005012 5.1e-153 544.7 331 78.9
Gorai.011G260700 Gossypium raimondii HOM05D004167 ORTHO05D005012 5.1e-153 544.7 336 78.9
Peaxi162Scf00015g01117 Petunia axillaris HOM05D004167 ORTHO05D005012 1.1e-152 543.5 336 76.5
GSVIVG01016551001 Vitis vinifera HOM05D004167 ORTHO05D005012 1.1e-152 543.5 337 78.3
MD07G1198100 Malus domestica HOM05D004167 ORTHO05D005012 1.3e-151 540.0 333 79.0
Manes.07G116100 Manihot esculenta HOM05D004167 ORTHO05D005012 6.3e-151 537.7 336 77.4
Lj1g0019937 Lotus japonicus HOM05D004167 ORTHO05D005012 6.9e-150 534.3 324 79.3
CAN.G1013.26 Capsicum annuum HOM05D004167 ORTHO05D005012 9.0e-150 533.9 336 74.1
CiPaw.01G287300 Carya illinoinensis HOM05D004167 ORTHO05D005012 1.2e-149 533.5 331 77.3
CANSAT56G0736 Cannabis sativa HOM05D004167 ORTHO05D005012 3.4e-149 531.9 331 76.7
MD01G1133900 Malus domestica HOM05D004167 ORTHO05D005012 3.4e-149 531.9 333 77.2
Ca_07311_v3 Cicer arietinum L. HOM05D004167 ORTHO05D005012 7.7e-149 530.8 324 78.7
Rhsim09G0165800 Rhododendron simsii HOM05D004167 ORTHO05D005012 7.7e-149 530.8 337 77.7
Glyma.18G291100 Glycine max HOM05D004167 ORTHO05D005012 1.0e-148 530.4 324 77.2
Lalb_Chr10g0091651 Lupinus albus HOM05D004167 ORTHO05D005012 1.7e-148 529.6 324 78.7
PGSC0003DMG400023531 Solanum tuberosum HOM05D004167 ORTHO05D005012 2.9e-148 528.9 336 74.4
CSS0037407 Camellia sinensis var. sinensis HOM05D004167 ORTHO05D005012 3.8e-148 528.5 333 77.5
MSTRG.303 Avicennia marina HOM05D004167 ORTHO05D005012 1.1e-147 526.9 337 76.0
RcHm_v2.0_Chr1g0367061 Rosa chinensis HOM05D004167 ORTHO05D005012 1.1e-147 526.9 333 77.2
SalBow6G7174 Salvia bowleyana HOM05D004167 ORTHO05D005012 1.4e-147 526.6 366 71.3
Solyc05g054460.3 Solanum lycopersicum HOM05D004167 ORTHO05D005012 1.4e-147 526.6 336 73.8
Sopen05g032950 Solanum pennellii HOM05D004167 ORTHO05D005012 1.4e-147 526.6 336 73.8
TAR623G0075 Trochodendron aralioides HOM05D004167 ORTHO05D005012 1.4e-147 526.6 337 76.6
Glyma.02G091700 Glycine max HOM05D004167 ORTHO05D005012 1.9e-147 526.2 322 77.3
arahy.Tifrunner.gnm1.ann1.A8V5RI Arachis hypogaea HOM05D004167 ORTHO05D005012 2.5e-147 525.8 324 76.2
arahy.Tifrunner.gnm1.ann1.TM884Y Arachis hypogaea HOM05D004167 ORTHO05D005012 2.5e-147 525.8 324 76.2
FvH4_7g22450 Fragaria vesca HOM05D004167 ORTHO05D005012 3.2e-147 525.4 331 77.9
FAN06G3201 Fragaria x ananassa HOM05D004167 ORTHO05D005012 3.2e-147 525.4 331 77.9
FAN06G2439 Fragaria x ananassa HOM05D004167 ORTHO05D005012 4.2e-147 525.0 331 77.6
THA.LOC104824275 Tarenaya hassleriana HOM05D004167 ORTHO05D005012 1.2e-146 523.5 336 76.2
Duzib114G0485 Durio zibethinus HOM05D004167 ORTHO05D005012 1.4e-145 520.0 311 80.1
FAN01G0242 Fragaria x ananassa HOM05D004167 ORTHO05D005012 1.8e-145 519.6 338 76.3
Phvul.008G010800 Phaseolus vulgaris HOM05D004167 ORTHO05D005012 1.8e-145 519.6 324 76.9
Sc11g0007950 Simmondsia chinensis HOM05D004167 ORTHO05D005012 2.3e-145 519.2 336 75.0
FAN01G1831 Fragaria x ananassa HOM05D004167 ORTHO05D005012 6.7e-145 517.7 338 76.0
Nn2g10367 Nelumbo nucifera HOM05D004167 ORTHO05D005012 8.8e-145 517.3 331 76.7
Sabra10G0157600 Salix brachista HOM05D004167 ORTHO05D005012 1.1e-144 516.9 350 73.4
Cc02_g07870 Coffea canephora HOM05D004167 ORTHO05D005012 2.5e-144 515.8 333 74.8
TPR.G1356 Trifolium pratense HOM05D004167 ORTHO05D005012 2.5e-144 515.8 324 76.5
FAN10G4113 Fragaria x ananassa HOM05D004167 ORTHO05D005012 7.4e-144 514.2 338 76.0
ClCG07G003290 Citrullus lanatus HOM05D004167 ORTHO05D005012 1.3e-143 513.5 336 76.2
Duzib106G0246 Durio zibethinus HOM05D004167 ORTHO05D005012 3.7e-143 511.9 307 79.8
Medtr7g026260 Medicago truncatula HOM05D004167 ORTHO05D005012 3.7e-143 511.9 324 76.5
VMungo1383G2822 Vigna mungo HOM05D004167 ORTHO05D005012 3.7e-143 511.9 295 82.0
SGA_v2.0_scaffold108G31010 Striga asiatica HOM05D004167 ORTHO05D005012 1.8e-142 509.6 336 75.0
Cpa.g.sc1.403 Carica papaya HOM05D004167 ORTHO05D005012 3.1e-142 508.8 306 81.0
CsaV3_5G026660 Cucumis sativus L. HOM05D004167 ORTHO05D005012 1.5e-141 506.5 314 77.4
Migut.F01510 Erythranthe guttata HOM05D004167 ORTHO05D005012 1.5e-141 506.5 337 73.6
EL10Ac2g04752 Beta vulgaris HOM05D004167 ORTHO05D005012 2.6e-141 505.8 327 75.2
Carub.0004s2167 Capsella rubella HOM05D004167 ORTHO05D005012 7.7e-141 504.2 334 74.6
Nn5g26919 Nelumbo nucifera HOM05D004167 ORTHO05D005012 1.3e-140 503.4 345 73.3
Sp4g21890 Schrenkiella parvula HOM05D004167 ORTHO05D005012 1.3e-140 503.4 334 74.0
Thhalv10016901m.g Eutrema salsugineum HOM05D004167 ORTHO05D005012 1.7e-140 503.1 334 73.4
Gohir.A10G218700 Gossypium hirsutum HOM05D004167 ORTHO05D005012 2.2e-140 502.7 336 74.4
AT2G39630 Arabidopsis thaliana HOM05D004167 ORTHO05D005012 2.9e-140 502.3 334 73.7
Sed0007402 Sechium edule HOM05D004167 ORTHO05D005012 1.1e-139 500.4 336 72.3
MELO3C021632.2 Cucumis melo HOM05D004167 ORTHO05D005012 1.4e-139 500.0 336 72.6
Ah.16g102290 Amaranthus hybridus HOM05D004167 ORTHO05D005012 1.9e-139 499.6 330 73.3
AL4G37040 Arabidopsis lyrata HOM05D004167 ORTHO05D005012 4.2e-139 498.4 334 73.7
Sed0027549 Sechium edule HOM05D004167 ORTHO05D005012 4.2e-139 498.4 328 76.2
BraA03t11449Z Brassica rapa HOM05D004167 ORTHO05D005012 7.2e-139 497.7 334 73.7
MELO3C023850.2 Cucumis melo HOM05D004167 ORTHO05D005012 7.2e-139 497.7 336 75.0
Hund13759 Selenicereus undatus HOM05D004167 ORTHO05D005012 1.2e-138 496.9 330 73.6
HanXRQChr14g0457931 Helianthus annuus HOM05D004167 ORTHO05D005012 1.6e-138 496.5 332 74.1
AUR62039381 Chenopodium quinoa HOM05D004167 ORTHO05D005012 4.7e-138 495.0 352 70.5
TAR633G1670 Trochodendron aralioides HOM05D004167 ORTHO05D005012 4.7e-138 495.0 306 76.8
FAN03G2888 Fragaria x ananassa HOM05D004167 ORTHO05D005012 6.1e-138 494.6 298 80.9
DCAR_011694 Daucus carota HOM05D004167 ORTHO05D005012 1.4e-137 493.4 333 73.0
Aa31LG5G20010 Aethionema arabicum HOM05D004167 ORTHO05D005012 3.9e-137 491.9 336 72.9
Sabra08G0040300 Salix brachista HOM05D004167 ORTHO05D005012 3.7e-135 485.3 327 73.4
A05p06810 Brassica napus HOM05D004167 ORTHO05D005012 4.1e-134 481.9 327 73.4
Aqoxy5G03379 Aquilegia oxysepala HOM05D004167 ORTHO05D005012 5.3e-134 481.5 336 69.6
BolC3t15010H Brassica oleracea HOM05D004167 ORTHO05D005012 1.5e-133 479.9 358 67.9
BolC4t22416H Brassica oleracea HOM05D004167 ORTHO05D005012 1.5e-133 479.9 336 72.0
unitig_899.g15067 Utricularia gibba HOM05D004167 ORTHO05D005012 2.6e-133 479.2 335 71.6
C04p07990 Brassica napus HOM05D004167 ORTHO05D005012 1.0e-132 477.2 336 71.4
Lsat_1_v5_gn_9_65421 Lactuca sativa HOM05D004167 ORTHO05D005012 2.2e-132 476.1 314 74.5
BcaC02g12089 Brassica carinata HOM05D004167 ORTHO05D005012 5.0e-132 474.9 336 71.1
ECA238G2661 Erigeron canadensis HOM05D004167 ORTHO05D005012 6.5e-132 474.6 308 74.7
Lsat_1_v5_gn_2_119101 Lactuca sativa HOM05D004167 ORTHO05D005012 1.9e-131 473.0 322 72.4
PSO210G2827 Papaver somniferum HOM05D004167 ORTHO05D005012 2.1e-130 469.5 336 69.3
PSO210G3999 Papaver somniferum HOM05D004167 ORTHO05D005012 4.7e-130 468.4 336 69.3
Dinv26013 Davidia involucrata HOM05D004167 ORTHO05D005012 2.6e-128 462.6 288 77.4
MBI14_g20108_MAGBIO Magnolia biondii HOM05D004167 ORTHO05D005012 2.6e-128 462.6 333 70.9
BraA05t19647Z Brassica rapa HOM05D004167 ORTHO05D005012 7.4e-128 461.1 301 74.1
ECA232G2013 Erigeron canadensis HOM05D004167 ORTHO05D005012 1.7e-127 459.9 304 73.7
Actinidia13047 Actinidia chinensis HOM05D004167 ORTHO05D005012 1.8e-126 456.4 295 75.9
Zm00001eb062720 Zea mays HOM05D004167 ORTHO05D005012 2.9e-124 449.1 331 68.9
Os03g0821800 Oryza sativa ssp. japonica HOM05D004167 ORTHO05D005012 1.6e-122 443.4 291 73.5
HPP92_020200 Vanilla planifolia HOM05D004167 ORTHO05D005012 1.0e-121 440.7 333 65.8
ATR0559G365 Amborella trichopoda HOM05D004167 ORTHO05D005012 3.3e-120 435.6 327 65.4
Oeu064381.1 Olea europaea HOM05D004167 ORTHO05D005012 3.7e-119 432.2 274 76.6
Nitab4.5_0006489g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 1.2e-117 427.2 273 75.8
AUR62012082 Chenopodium quinoa HOM05D004167 ORTHO05D005012 3.8e-116 422.2 332 63.9
Lj8A84T90 Lonicera japonica HOM05D004167 ORTHO05D005012 1.1e-115 420.6 336 64.9
SEGI_18748 Sequoiadendron giganteum HOM05D004167 ORTHO05D005012 1.2e-114 417.2 339 62.2
ClCG09G019760 Citrullus lanatus HOM05D004167 ORTHO05D005012 4.0e-113 412.1 389 57.3
CDE09G1012 Ceratophyllum demersum HOM05D004167 ORTHO05D005012 1.2e-112 410.6 333 61.9
BcaB02g09101 Brassica carinata HOM05D004167 ORTHO05D005012 8.3e-111 404.4 246 80.1
Hund16089 Selenicereus undatus HOM05D004167 ORTHO05D005012 1.1e-110 404.1 274 72.3
CsaV3_5G008030 Cucumis sativus L. HOM05D004167 ORTHO05D005012 7.5e-104 381.3 274 72.6
Mapoly0005s0180 Marchantia polymorpha HOM05D004167 ORTHO05D005012 1.3e-103 380.6 288 62.5
SMO367G0757 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 1.4e-102 377.1 295 61.7
C03p26250 Brassica napus HOM05D004167 ORTHO05D005012 5.0e-100 368.6 299 63.9
Pp3c6_19470 Physcomitrium patens HOM05D004167 ORTHO05D005012 6.6e-100 368.2 334 55.7
TAR627G1156 Trochodendron aralioides HOM05D004167 ORTHO05D005012 1.5e-99 367.1 286 62.6
Manes.10G030400 Manihot esculenta HOM05D004167 ORTHO05D005012 2.9e-95 352.8 255 69.8
Actinidia13878 Actinidia chinensis HOM05D004167 ORTHO05D005012 4.9e-95 352.1 228 77.6
AagrBONN_evm.TU.Sc2ySwM_344.1330 Anthoceros agrestis HOM05D004167 ORTHO05D005012 1.5e-91 340.5 266 60.9
AagrBONN_evm.TU.Sc2ySwM_117.3937 Anthoceros agrestis HOM05D004167 ORTHO05D005012 3.3e-91 339.3 293 56.3
Gohir.A09G052700 Gossypium hirsutum HOM05D004167 ORTHO05D005012 1.6e-90 337.0 189 82.5
Pp3c3_37810 Physcomitrium patens HOM05D004167 ORTHO05D005012 2.9e-87 326.2 277 61.7
BcaC01g05486 Brassica carinata HOM05D004167 ORTHO05D005012 3.3e-83 312.8 183 81.4
Psat3g163360 Pisum sativum HOM05D004167 ORTHO05D005012 1.2e-82 310.8 217 71.4
CARHR134470 Cardamine hirsuta HOM05D004167 ORTHO05D005012 2.8e-82 309.7 185 78.4
Sed0025003 Sechium edule HOM05D004167 ORTHO05D005012 1.1e-81 307.8 228 69.3
vmacro10234 Vaccinium macrocarpon HOM05D004167 ORTHO05D005012 1.0e-76 291.2 283 57.6
TAR381G1570 Trochodendron aralioides HOM05D004167 ORTHO05D005012 3.0e-76 289.7 223 67.7
Cre16.g652850 Chlamydomonas reinhardtii HOM05D004167 ORTHO05D005012 8.6e-76 288.1 291 49.5
BraA02t07167Z Brassica rapa HOM05D004167 ORTHO05D005012 3.3e-67 259.6 182 70.3
PSO079G0067 Papaver somniferum HOM05D004167 ORTHO05D005012 1.2e-61 241.1 195 64.1
Hma1.2p1_0683F.1_g202820 Hydrangea macrophylla HOM05D004167 ORTHO05D005012 4.8e-58 229.2 140 77.9
AUR62014580 Chenopodium quinoa HOM05D004167 ORTHO05D005012 1.4e-57 227.6 164 69.5
EL10Ac8g19589 Beta vulgaris HOM05D004167 ORTHO05D005012 2.4e-54 216.9 226 54.0
SMO142G0075 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 3.2e-54 216.5 280 40.7
vmacro10235 Vaccinium macrocarpon HOM05D004167 ORTHO05D005012 1.6e-53 214.2 112 87.5
PRCOL_00006983 Prasinoderma coloniale HOM05D004167 ORTHO05D005012 3.0e-52 209.9 285 39.6
Haze_27280 Corylus avellana HOM05D004167 ORTHO05D005012 5.1e-52 209.1 343 36.2
SMO142G0035 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 3.4e-48 196.4 264 37.5
EL10Ac2g03543 Beta vulgaris HOM05D004167 ORTHO05D005012 7.9e-45 185.3 200 55.0
MSTRG.8242 Avicennia marina HOM05D004167 ORTHO05D005012 2.3e-44 183.7 103 83.5
CBR_g12000 Chara braunii HOM05D004167 ORTHO05D005012 2.1e-42 177.2 158 57.0
BcaC01g05485 Brassica carinata HOM05D004167 ORTHO05D005012 1.4e-41 174.5 144 61.8
CARHR134480 Cardamine hirsuta HOM05D004167 ORTHO05D005012 6.9e-41 172.2 150 58.7
Cfa024819 Carpinus fangiana HOM05D004167 ORTHO05D005012 1.3e-39 167.9 326 32.5
SHI22567 Sapria himalayana HOM05D004167 ORTHO05D005012 2.9e-39 166.8 121 65.3
Nitab4.5_0000065g0040 Nicotiana tabacum HOM05D004167 ORTHO05D005012 1.0e-36 158.3 129 62.8
EL10Ac3g06649 Beta vulgaris HOM05D004167 ORTHO05D005012 2.5e-35 153.7 117 70.1
SHI22568 Sapria himalayana HOM05D004167 ORTHO05D005012 1.1e-19 101.7 74 64.9
arahy.Tifrunner.gnm1.ann1.I9KCKB Arachis hypogaea HOM05D001644 ORTHO05D001641 1.5e-14 84.7 140 40.7
EL10Ac5g11410 Beta vulgaris HOM05D004167 ORTHO05D005012 8.0e-13 79.0 102 49.0
MCO09G598 Micromonas commoda HOM05D004167 ORTHO05D005012 2.0e-11 74.3 292 23.3
Cre03.g150950 Chlamydomonas reinhardtii HOM05D004063 ORTHO05D005326 3.7e-10 70.1 242 24.4
Pp3c23_20720 Physcomitrium patens HOM05D004063 ORTHO05D038441 2.0e-08 64.3 141 30.5
SalBow3G2867 Salvia bowleyana HOM05D037314 ORTHO05D005012 2.0e-08 64.3 36 77.8
SalBow3G3756 Salvia bowleyana HOM05D004167 ORTHO05D005012 3.5e-08 63.5 36 75.0
SalBow5G0433 Salvia bowleyana HOM05D004167 ORTHO05D005012 4.5e-08 63.2 35 77.1
AagrBONN_evm.TU.Sc2ySwM_228.1008 Anthoceros agrestis HOM05D004063 ORTHO05D038441 1.0e-07 62.0 267 23.6
SalBow8G3469 Salvia bowleyana HOM05D004167 ORTHO05D005012 1.7e-07 61.2 36 72.2
Cfa026140 Carpinus fangiana HOM05D004063 ORTHO05D005326 2.9e-07 60.5 106 36.8
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 6.5e-07 59.3 165 26.7
Nitab4.5_0000065g0050 Nicotiana tabacum HOM05D004167 ORTHO05D005012 8.5e-07 58.9 61 49.2
Haze_27556 Corylus avellana HOM05D004063 ORTHO05D005326 1.1e-06 58.5 201 21.9
SHI22565 Sapria himalayana HOM05D004167 ORTHO05D005012 1.5e-06 58.2 56 57.1
Sabra05G0194100 Salix brachista HOM05D001348 ORTHO05D002788 4.2e-06 56.6 248 20.2
CDE05G0379 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 7.2e-06 55.8 98 32.7
Lj4g0024263 Lotus japonicus HOM05D004063 ORTHO05D005326 9.4e-06 55.5 252 23.4
PRCOL_00004250 Prasinoderma coloniale HOM05D004063 ORTHO05D005326 9.4e-06 55.5 230 20.9


User provided reference genes

Program Settings