Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 2317.0 1197 100.0
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1588.9 1233 69.9
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1578.9 1220 69.8
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1570.4 1251 68.0
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1568.9 1213 70.1
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1554.7 1136 73.2
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1546.2 1221 68.1
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1545.0 1227 68.5
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1544.6 1224 68.6
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1541.9 1227 68.4
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1541.2 1232 68.0
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1537.7 1143 70.5
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1537.3 1224 67.7
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1536.2 1232 67.8
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1535.4 1221 67.6
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1535.0 1214 68.7
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1530.8 1201 68.7
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1530.0 1209 67.5
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1529.6 1214 67.5
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1525.8 1260 66.9
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1522.3 1154 69.2
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1521.5 1138 69.9
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1519.2 1222 68.0
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1518.1 1140 69.8
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1515.7 1217 66.6
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1506.1 1201 67.5
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1504.2 1220 67.2
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1502.6 1226 65.9
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1502.3 1225 67.8
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1498.4 1222 67.0
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1494.6 1216 66.7
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1486.9 1240 66.7
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1485.3 1221 66.4
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1483.8 1194 66.8
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1479.5 1214 66.0
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1479.5 1226 65.5
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1479.5 1226 65.6
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1474.5 1201 66.4
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1473.8 1206 66.6
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1473.4 1226 65.3
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1473.0 1216 66.4
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1470.3 1201 66.3
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1470.3 1223 65.7
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1468.0 1184 67.2
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1465.3 1203 66.8
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1463.7 1201 66.0
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1463.0 1167 66.4
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1462.6 1219 65.7
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1461.8 1195 66.3
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1461.8 1206 65.8
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1461.0 1197 66.4
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1457.6 1143 67.2
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1453.7 1226 65.1
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1451.8 1221 65.8
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1451.0 1245 64.8
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1451.0 1245 64.8
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1451.0 1195 66.6
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1450.6 1208 65.8
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1450.6 1208 65.8
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1449.5 1206 65.5
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1449.1 1195 66.3
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1448.3 1227 65.3
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1448.3 1244 64.2
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1448.0 1231 65.2
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1446.8 1245 64.5
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1443.3 1234 65.2
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1440.6 1209 64.5
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1438.7 1210 64.6
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1432.5 1209 64.5
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1429.8 1177 66.5
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1429.1 1188 65.0
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1426.4 1206 65.0
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1421.8 1191 64.6
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1421.8 1192 64.6
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1407.9 1172 65.7
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1407.5 1163 66.3
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1402.1 1143 66.8
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1397.5 1171 63.6
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1395.6 1422 57.2
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1392.5 1324 60.0
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1391.7 1133 66.7
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1379.4 1178 64.0
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1375.1 1230 62.0
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1368.6 1212 62.3
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1361.3 1222 60.7
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1347.4 1158 63.4
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1339.7 1237 60.3
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1328.5 1241 59.8
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1307.0 1114 63.7
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1295.0 1192 60.2
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1294.6 1154 63.0
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1252.3 1022 64.9
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1194.1 1203 56.3
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1185.2 1181 57.7
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1180.6 1062 60.6
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1172.9 1065 59.8
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1166.0 1118 57.3
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1151.0 1181 56.0
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 0.0e+00 1132.9 829 72.7
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1120.1 1219 54.6
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 0.0e+00 1088.9 1174 53.8
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 4.1e-311 1071.6 990 60.2
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 6.6e-304 1047.7 1178 51.8
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 2.4e-290 1002.7 1247 50.4
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 2.6e-284 982.6 1131 51.2
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 4.5e-268 928.7 746 66.8
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 1.1e-266 924.1 774 66.4
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 6.7e-264 914.8 677 71.5
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 2.7e-257 892.9 946 54.0
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.6e-247 859.8 664 67.9
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 3.4e-239 832.8 1254 43.5
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 2.4e-237 826.6 1274 42.5
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 4.4e-231 805.8 634 66.9
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 3.4e-223 779.6 637 66.1
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.2e-220 771.2 1153 42.9
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 1.7e-219 767.3 666 62.0
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 3.3e-210 736.5 685 60.7
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 3.3e-210 736.5 612 64.5
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 1.9e-205 720.7 594 66.2
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 9.9e-191 671.8 1136 39.8
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.3e-179 634.0 590 60.5
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 4.9e-174 616.3 519 63.2
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 2.3e-155 554.3 455 64.4
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.3e-153 548.5 454 64.1
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 1.4e-147 528.5 1515 30.4
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 4.8e-145 520.0 429 64.1
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 1.4e-123 448.7 397 63.0
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 3.0e-123 447.6 410 61.7
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 1.5e-101 375.6 420 50.2
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 3.5e-95 354.4 297 61.3
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 1.9e-93 348.6 348 58.3
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 5.8e-90 337.0 484 46.5
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.5e-90 336.7 1126 28.2
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 3.2e-88 331.3 254 70.5
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.4e-81 306.6 395 47.1
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 1.4e-75 289.3 263 61.2
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 1.4e-75 289.3 279 54.5
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 4.2e-64 251.1 214 64.5
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.2e-63 249.6 202 64.4
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 9.3e-56 223.4 127 89.8
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 3.7e-52 211.5 180 60.6
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 2.2e-49 202.2 181 59.1
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.0e-47 194.1 210 50.5
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.1e-46 191.0 208 50.5
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.5e-45 189.5 208 50.0
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 9.7e-45 186.8 204 50.5
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 3.7e-44 184.9 166 63.3
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.9e-39 167.2 278 40.6
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.1e-35 156.8 132 65.2
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-35 156.4 134 53.7
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-34 153.3 130 54.6
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 1.7e-33 149.4 130 53.8
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 2.2e-33 149.1 143 49.7
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 2.1e-31 142.5 106 65.1
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.9e-31 140.6 159 50.3
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.5e-25 120.6 111 51.4
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.3e-21 108.6 64 82.8
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 4.8e-20 104.8 233 36.1
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.4e-19 103.2 106 63.2
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.8e-19 102.8 107 62.6
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 9.1e-19 100.5 64 76.6
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.2e-16 92.0 194 36.6
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 5.5e-16 91.3 67 73.1
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 1.6e-15 89.7 174 38.5
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 4.8e-12 78.2 61 68.9
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 6.3e-12 77.8 94 40.4
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 1.1e-11 77.0 72 59.7
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 9.1e-11 73.9 93 46.2
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 9.1e-11 73.9 146 40.4
Gohir.D13G142400 Gossypium hirsutum HOM05D000260 ORTHO05D020362 3.6e-07 62.0 88 52.3
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 3.6e-07 62.0 149 38.3
Cfa005276 Carpinus fangiana HOM05D004065 ORTHO05D020362 2.3e-06 59.3 87 54.0
SHI22584 Sapria himalayana HOM05D004065 ORTHO05D004806 5.2e-06 58.2 102 42.2
Gorai.002G055300 Gossypium raimondii HOM05D000671 ORTHO05D000797 8.8e-06 57.4 63 61.9


User provided reference genes

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