Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 0.0e+00 3350.1 1709 100.0
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 0.0e+00 1214.9 1768 43.4
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 0.0e+00 1203.0 1690 44.1
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 0.0e+00 1181.8 1691 43.5
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 0.0e+00 1150.6 1760 41.7
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 0.0e+00 1144.8 1789 41.5
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 0.0e+00 1139.8 1767 41.6
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 0.0e+00 1090.9 1789 40.7
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1087.4 1752 41.3
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 0.0e+00 1080.5 1751 39.5
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 8.2e-311 1071.2 1590 42.4
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 7.0e-307 1058.1 1751 40.9
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 9.2e-307 1057.7 1787 39.4
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 1.2e-306 1057.4 1743 40.0
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 2.3e-305 1053.1 1781 39.8
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 1.1e-304 1050.8 1770 39.7
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 3.3e-304 1049.3 1779 39.2
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 1.6e-303 1047.0 1754 39.9
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 3.6e-303 1045.8 1775 39.4
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 6.8e-302 1041.6 1686 41.7
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 1.2e-301 1040.8 1783 39.1
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 2.2e-300 1036.6 1338 45.3
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 4.3e-296 1022.3 1774 38.8
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 8.9e-294 1014.6 1855 37.9
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 6.2e-287 991.9 1800 38.2
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 6.8e-286 988.4 1755 38.6
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.5e-285 987.3 1807 38.0
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.4e-283 980.7 1817 37.9
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.2e-282 977.6 1803 37.9
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 6.0e-282 975.3 1799 38.0
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 8.1e-279 964.9 1803 37.2
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 1.1e-278 964.5 1802 37.1
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 1.4e-275 954.1 1683 39.2
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 3.2e-275 953.0 1753 38.3
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 7.1e-259 898.7 1756 36.4
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 2.1e-258 897.1 1687 36.2
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 2.1e-258 897.1 1687 36.2
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 1.1e-256 891.3 1797 36.4
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 6.2e-255 885.6 1750 36.6
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 6.4e-252 875.5 1801 36.3
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 3.2e-251 873.2 1748 35.6
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 4.2e-251 872.8 1598 36.8
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 1.0e-249 868.2 1286 41.4
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 4.5e-245 852.8 1781 36.2
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 7.6e-245 852.0 1775 35.3
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 6.5e-244 849.0 1729 35.5
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 2.1e-242 844.0 1773 35.3
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 4.6e-242 842.8 1665 36.1
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 6.0e-242 842.4 1770 35.4
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 2.3e-241 840.5 2104 32.4
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 1.1e-238 831.6 1248 40.6
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 3.1e-238 830.1 1769 34.4
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 5.3e-238 829.3 1766 34.9
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 3.4e-237 826.6 1621 36.0
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 3.4e-237 826.6 1806 34.8
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 4.5e-237 826.2 1252 40.5
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 4.5e-237 826.2 1717 35.8
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 2.9e-236 823.5 1857 34.1
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 9.3e-235 818.5 1758 35.0
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 3.6e-234 816.6 1719 35.3
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 1.8e-230 804.3 1315 38.1
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 7.7e-229 798.9 1258 39.2
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 1.0e-225 788.5 1875 33.5
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 2.2e-223 780.8 1693 34.9
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 2.8e-223 780.4 1734 34.3
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 1.2e-221 775.0 1723 35.5
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 3.2e-219 766.9 1715 35.2
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 3.2e-219 766.9 1715 34.2
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 1.2e-218 765.0 1726 34.3
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 1.1e-216 758.4 1751 33.8
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 1.2e-213 748.4 1770 33.5
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 7.2e-211 739.2 1730 34.2
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 2.7e-210 737.3 1732 34.5
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 2.7e-210 737.3 1736 33.8
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 2.0e-208 731.1 1700 33.7
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 8.2e-207 725.7 1734 34.1
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 4.5e-205 719.9 1817 31.9
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 1.0e-204 718.8 1806 32.2
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 2.9e-204 717.2 1274 37.1
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 8.5e-204 715.7 1715 33.2
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 2.5e-203 714.1 816 47.8
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 4.2e-203 713.4 1628 33.9
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 4.2e-203 713.4 1673 33.1
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 2.0e-197 694.5 926 42.0
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 4.2e-195 686.8 1521 35.3
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 2.1e-186 657.9 1778 30.9
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 6.4e-183 646.4 662 50.6
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 7.3e-171 606.3 750 42.5
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 2.9e-167 594.3 703 46.2
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 1.9e-166 591.7 634 49.2
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 1.3e-164 585.5 1784 30.4
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 5.2e-161 573.5 1238 32.9
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 6.4e-159 566.6 1328 31.3
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 8.1e-154 549.7 1638 30.5
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 9.0e-145 519.6 1381 33.2
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 2.2e-122 445.3 930 32.7
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 1.1e-113 416.4 1137 32.0
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 7.7e-104 383.6 426 46.7
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 7.7e-96 357.1 672 35.3
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 1.7e-95 355.9 1207 29.8
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 9.7e-91 340.1 596 36.9
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 4.5e-80 304.7 617 36.0
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 4.0e-76 291.6 849 31.6
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 2.2e-74 285.8 910 27.4
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 6.6e-71 274.2 464 34.9
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 7.5e-67 260.8 539 31.5
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 2.5e-62 245.7 859 28.5
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 6.0e-56 224.6 1069 23.6
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 3.2e-49 202.2 1183 24.4
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 9.5e-46 190.7 655 27.6
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 1.6e-45 189.9 676 31.8
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 2.1e-37 162.9 800 27.6
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.7e-26 126.7 127 45.7
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 9.6e-22 110.9 117 43.6
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 9.3e-17 94.4 403 30.5
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 9.3e-17 94.4 457 28.2
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 8.7e-15 87.8 272 30.9
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 2.5e-14 86.3 240 33.3
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 3.3e-14 85.9 415 26.3
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 3.7e-13 82.4 373 28.7
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 1.8e-12 80.1 75 54.7
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 5.3e-12 78.6 151 33.8
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 1.5e-11 77.0 318 28.3
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 3.4e-11 75.9 325 30.8
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 2.9e-10 72.8 300 28.7
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 5.1e-07 62.0 104 35.6


User provided reference genes

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